Wall clock time and date at job start Tue Mar 31 2020 16:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00400 * 2 1 4 4 H 1.48499 * 109.47177 * 270.00392 * 3 2 1 5 5 H 1.48500 * 109.46927 * 29.99592 * 3 2 1 6 6 H 1.48497 * 109.47725 * 149.99996 * 3 2 1 7 7 C 1.38813 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00439 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00498 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84870 * 23.79957 * 10 9 7 12 12 C 1.53775 * 113.61795 * 155.00012 * 10 9 7 13 13 C 1.53776 * 87.08375 * 89.11462 * 12 10 9 14 14 H 1.09002 * 113.61537 * 270.80407 * 13 12 10 15 15 N 1.46499 * 113.61512 * 139.97900 * 13 12 10 16 16 C 1.34784 * 120.00010 * 154.99955 * 15 13 12 17 17 O 1.21284 * 119.99717 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99862 * 180.02562 * 16 15 13 19 19 C 1.53004 * 109.46780 * 186.13152 * 18 16 15 20 20 H 1.08999 * 109.22235 * 306.55637 * 19 18 16 21 21 C 1.52729 * 109.25964 * 66.01471 * 19 18 16 22 22 C 1.53325 * 108.41201 * 171.45902 * 21 19 18 23 23 C 1.52734 * 108.40009 * 290.11872 * 22 21 19 24 24 C 1.50630 * 110.59747 * 51.04744 * 23 22 21 25 25 C 1.38914 * 117.75964 * 162.33295 * 24 23 22 26 26 C 1.37927 * 120.55179 * 179.74748 * 25 24 23 27 27 C 1.38264 * 119.77228 * 359.96803 * 26 25 24 28 28 C 1.37940 * 119.76940 * 0.12424 * 27 26 25 29 29 C 1.37667 * 122.56657 * 342.28224 * 24 23 22 30 30 C 1.53782 * 87.08182 * 25.43451 * 13 12 10 31 31 H 0.97001 * 119.99808 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99097 * 359.97438 * 9 7 2 33 33 H 1.09000 * 113.61224 * 334.56927 * 12 10 9 34 34 H 1.08997 * 113.61903 * 203.66860 * 12 10 9 35 35 H 0.97000 * 120.00280 * 335.00815 * 15 13 12 36 36 H 1.08994 * 109.47290 * 66.13330 * 18 16 15 37 37 H 1.09004 * 109.47212 * 306.12353 * 18 16 15 38 38 H 1.09008 * 109.68498 * 51.72250 * 21 19 18 39 39 H 1.08996 * 109.68566 * 291.20234 * 21 19 18 40 40 H 1.09007 * 109.67721 * 49.84054 * 22 21 19 41 41 H 1.08997 * 109.68305 * 170.35230 * 22 21 19 42 42 H 1.08996 * 109.25251 * 171.33372 * 23 22 21 43 43 H 1.09004 * 109.24997 * 290.76594 * 23 22 21 44 44 H 1.08008 * 119.72361 * 359.71090 * 25 24 23 45 45 H 1.07998 * 120.11299 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.11645 * 180.15838 * 27 26 25 47 47 H 1.08002 * 119.72587 * 179.97438 * 28 27 26 48 48 H 1.09005 * 113.61689 * 89.11306 * 30 13 12 49 49 H 1.08992 * 113.61900 * 220.02221 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5280 -3.2973 -0.4028 12 6 5.5263 -2.3663 -0.5928 13 6 6.0124 -2.0231 0.8252 14 1 5.9883 -0.9565 1.0488 15 7 7.2898 -2.6491 1.1752 16 6 8.0800 -2.0894 2.1128 17 8 7.7332 -1.0679 2.6671 18 6 9.3943 -2.7330 2.4724 19 6 10.0173 -1.9926 3.6576 20 1 10.0759 -0.9292 3.4257 21 6 9.1410 -2.1912 4.8927 22 6 9.8847 -1.6284 6.1097 23 6 11.0742 -2.5378 6.4108 24 6 11.8933 -2.7680 5.1678 25 6 13.1881 -3.2459 5.3254 26 6 13.9869 -3.4821 4.2261 27 6 13.4957 -3.2422 2.9562 28 6 12.2109 -2.7659 2.7975 29 6 11.4058 -2.5246 3.9035 30 6 4.7866 -2.7916 1.3465 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 0.0007 33 1 5.6414 -1.5482 -1.3037 34 1 5.9126 -3.3133 -0.9696 35 1 7.5671 -3.4662 0.7321 36 1 10.0690 -2.6835 1.6178 37 1 9.2264 -3.7755 2.7431 38 1 8.9486 -3.2541 5.0393 39 1 8.1972 -1.6619 4.7621 40 1 10.2391 -0.6213 5.8897 41 1 9.2151 -1.6022 6.9693 42 1 11.6996 -2.0714 7.1719 43 1 10.7094 -3.4952 6.7831 44 1 13.5726 -3.4335 6.3171 45 1 14.9927 -3.8532 4.3569 46 1 14.1155 -3.4276 2.0914 47 1 11.8280 -2.5783 1.8052 48 1 4.9707 -3.8550 1.5000 49 1 4.3046 -2.3169 2.2010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020956398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:54 Heat of formation + Delta-G solvation = 4.592426 kcal Electronic energy + Delta-G solvation = -27332.621006 eV Core-core repulsion = 23645.392950 eV Total energy + Delta-G solvation = -3687.228056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74404 -39.72393 -38.20822 -36.29214 -34.13588 -33.89403 -32.63463 -30.49857 -30.43301 -29.93615 -27.43735 -25.23496 -24.51881 -23.46872 -22.97194 -22.58184 -21.73260 -20.26597 -19.56798 -18.92061 -17.70572 -17.28926 -16.54291 -16.16212 -15.85155 -15.54982 -15.35756 -14.85380 -14.53305 -14.24097 -14.14333 -13.86502 -13.62173 -13.26321 -13.06417 -13.01842 -12.74542 -12.62880 -12.48165 -12.27957 -12.13676 -12.02436 -11.85031 -11.62688 -11.45623 -11.08389 -10.96091 -10.84730 -10.59249 -10.46553 -10.36132 -10.26923 -9.90681 -9.67445 -9.57001 -9.02960 -8.95620 -8.80440 -8.76801 -7.31854 -5.80068 -3.16772 1.08851 1.09331 2.68248 3.24747 3.38262 3.42816 3.46178 3.48097 4.32535 4.36976 4.55648 4.57490 4.58416 4.68186 4.83570 4.86615 4.90217 4.94731 5.04141 5.07450 5.12681 5.16111 5.20086 5.26221 5.35666 5.40749 5.49430 5.54478 5.66078 5.68667 5.70374 5.74928 5.76001 5.82963 5.91064 5.98769 6.07837 6.11483 6.17858 6.23676 6.25655 6.31643 6.42012 6.50113 6.57475 6.67754 6.74212 6.89131 7.59760 7.96496 8.31247 8.39171 9.16521 9.89011 10.07304 11.37743 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.002246 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.023266 B =12462.980919 C =12959.912233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.729 5.729 10 C 0.177 3.823 11 H 0.077 0.923 12 C -0.166 4.166 13 C 0.122 3.878 14 H 0.109 0.891 15 N -0.719 5.719 16 C 0.509 3.491 17 O -0.537 6.537 18 C -0.137 4.137 19 C -0.032 4.032 20 H 0.093 0.907 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.082 4.082 24 C -0.072 4.072 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.068 4.068 30 C -0.182 4.182 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.397 0.603 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.566 -10.045 8.347 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.095 0.905 12 C -0.206 4.206 13 C 0.018 3.982 14 H 0.127 0.873 15 N -0.369 5.369 16 C 0.295 3.705 17 O -0.414 6.414 18 C -0.177 4.177 19 C -0.050 4.050 20 H 0.111 0.889 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.072 4.072 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.068 4.068 30 C -0.224 4.224 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.091 0.909 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 29.019 -9.333 8.735 31.710 hybrid contribution 0.886 0.722 -0.247 1.169 sum 29.905 -8.611 8.489 32.257 Atomic orbital electron populations 1.69696 1.05099 1.25953 1.57044 1.24674 0.95260 0.97264 1.01692 0.86589 0.79443 0.84958 0.77851 1.20977 1.21580 1.20107 1.19088 0.80300 0.94858 1.43578 0.88971 1.42545 1.04069 1.01558 1.88787 1.20859 0.89745 0.90217 0.92768 0.90526 1.23910 0.99118 1.01730 0.95793 1.22639 0.80912 0.98742 0.95937 0.87269 1.46141 1.21185 1.28706 1.40887 1.20634 0.85705 0.84801 0.79340 1.90706 1.74304 1.24359 1.51995 1.21868 0.94858 1.01184 0.99825 1.19799 0.90270 1.00358 0.94606 0.88908 1.21687 0.99411 1.01272 0.93188 1.21530 0.96492 0.99143 0.98450 1.20512 0.96399 1.00426 0.94552 1.19646 0.94459 0.98828 0.94291 1.21158 0.93825 1.00192 0.98843 1.21051 0.99688 1.00698 0.92791 1.21066 0.95800 1.00015 0.97288 1.21243 0.94216 1.00000 0.98513 1.19644 0.95713 0.98955 0.92465 1.24270 0.96832 0.99231 1.02063 0.92957 0.80388 0.91031 0.89898 0.76959 0.88655 0.88943 0.92114 0.89567 0.91575 0.91322 0.90950 0.90664 0.86318 0.86279 0.86195 0.85988 0.90877 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.73 -17.11 5.11 -52.64 -0.27 -17.38 16 10 C 0.18 3.26 4.56 -67.12 -0.31 2.95 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.17 -2.38 7.58 -25.92 -0.20 -2.58 16 13 C 0.12 1.85 4.12 -67.12 -0.28 1.57 16 14 H 0.11 2.00 7.46 -51.93 -0.39 1.62 16 15 N -0.72 -8.43 5.35 -53.02 -0.28 -8.72 16 16 C 0.51 6.47 7.50 -10.98 -0.08 6.39 16 17 O -0.54 -9.12 13.86 5.55 0.08 -9.05 16 18 C -0.14 -1.23 4.85 -27.88 -0.14 -1.36 16 19 C -0.03 -0.32 1.90 -91.90 -0.17 -0.49 16 20 H 0.09 1.08 7.80 -51.93 -0.40 0.68 16 21 C -0.12 -1.23 4.88 -26.70 -0.13 -1.36 16 22 C -0.12 -1.06 5.98 -26.70 -0.16 -1.22 16 23 C -0.08 -0.64 5.67 -28.05 -0.16 -0.80 16 24 C -0.07 -0.65 5.74 -104.61 -0.60 -1.25 16 25 C -0.12 -0.98 9.61 -39.44 -0.38 -1.36 16 26 C -0.12 -0.94 10.05 -39.69 -0.40 -1.34 16 27 C -0.12 -0.95 10.05 -39.68 -0.40 -1.35 16 28 C -0.12 -1.02 9.03 -39.44 -0.36 -1.38 16 29 C -0.07 -0.63 5.43 -104.57 -0.57 -1.20 16 30 C -0.18 -3.00 7.68 -25.92 -0.20 -3.20 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.50 5.76 -40.82 -0.24 8.26 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.40 3.33 8.73 -40.82 -0.36 2.98 16 36 H 0.10 0.67 6.09 -51.93 -0.32 0.36 16 37 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.06 0.59 8.06 -51.92 -0.42 0.18 16 39 H 0.09 1.11 6.47 -51.93 -0.34 0.78 16 40 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.12 0.74 8.05 -52.48 -0.42 0.31 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.12 0.85 6.24 -52.49 -0.33 0.52 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -33.43 385.73 -11.24 -44.67 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.86 Total: 10.46 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -4.77 Total: -15.00 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.22 Total: -54.53 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.43 -11.24 -44.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020956398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.258 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds