Wall clock time and date at job start Tue Mar 31 2020 16:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00975 * 3 2 1 5 5 H 1.48511 * 109.46881 * 30.00844 * 3 2 1 6 6 H 1.48497 * 109.47260 * 150.00452 * 3 2 1 7 7 C 1.38808 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00029 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00535 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84475 * 23.80387 * 10 9 7 12 12 C 1.53779 * 113.61437 * 154.99679 * 10 9 7 13 13 C 1.53782 * 87.08025 * 89.20479 * 12 10 9 14 14 H 1.09002 * 113.61052 * 270.79948 * 13 12 10 15 15 N 1.46498 * 113.61542 * 139.97648 * 13 12 10 16 16 C 1.34777 * 119.99828 * 154.72141 * 15 13 12 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 13 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 13 19 19 C 1.52990 * 109.47398 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.67980 * 54.48670 * 19 18 16 21 21 C 1.53329 * 109.68191 * 174.99956 * 19 18 16 22 22 C 1.52738 * 108.38418 * 189.59403 * 21 19 18 23 23 C 1.50626 * 110.59121 * 308.89573 * 22 21 19 24 24 C 1.38913 * 117.75657 * 197.72628 * 23 22 21 25 25 C 1.37928 * 120.54401 * 180.24254 * 24 23 22 26 26 C 1.38263 * 119.77330 * 0.03760 * 25 24 23 27 27 C 1.37924 * 119.77129 * 359.88369 * 26 25 24 28 28 C 1.37665 * 122.56243 * 17.80110 * 23 22 21 29 29 C 1.50631 * 122.56288 * 359.23245 * 28 23 22 30 30 C 1.53777 * 113.69198 * 252.53467 * 10 9 7 31 31 H 0.97001 * 119.99641 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00191 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.61777 * 334.65303 * 12 10 9 34 34 H 1.08999 * 113.61498 * 203.74798 * 12 10 9 35 35 H 0.97001 * 120.00384 * 335.00588 * 15 13 12 36 36 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 37 37 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 38 38 H 1.09003 * 109.68183 * 309.31529 * 21 19 18 39 39 H 1.08997 * 109.68249 * 69.83251 * 21 19 18 40 40 H 1.09005 * 109.25446 * 69.19042 * 22 21 19 41 41 H 1.09001 * 109.25127 * 188.61150 * 22 21 19 42 42 H 1.08001 * 119.72669 * 0.21926 * 24 23 22 43 43 H 1.08009 * 120.11222 * 180.02562 * 25 24 23 44 44 H 1.08006 * 120.11351 * 179.85765 * 26 25 24 45 45 H 1.08001 * 119.72793 * 179.97438 * 27 26 25 46 46 H 1.09006 * 109.26024 * 257.52573 * 29 28 23 47 47 H 1.08996 * 109.24797 * 138.09999 * 29 28 23 48 48 H 1.09001 * 113.61338 * 156.31737 * 30 10 9 49 49 H 1.09000 * 113.61355 * 25.42000 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6526 0.7003 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2601 -4.8287 0.5950 13 6 0.7221 -5.0805 -0.8235 14 1 -0.1894 -4.5271 -1.0493 15 7 0.6268 -6.5003 -1.1716 16 6 -0.2551 -6.9073 -2.1059 17 8 -0.9662 -6.0975 -2.6622 18 6 -0.3576 -8.3687 -2.4596 19 6 -1.4251 -8.5585 -3.5390 20 1 -1.2049 -7.9145 -4.3903 21 6 -1.4469 -10.0233 -3.9917 22 6 -2.3420 -10.1332 -5.2244 23 6 -3.6787 -9.4881 -4.9677 24 6 -4.7288 -9.8157 -5.8160 25 6 -5.9760 -9.2548 -5.6366 26 6 -6.1837 -8.3584 -4.6046 27 6 -5.1428 -8.0330 -3.7602 28 6 -3.8866 -8.5988 -3.9376 29 6 -2.7991 -8.2094 -2.9708 30 6 2.0010 -4.4033 -1.3438 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.4928 -4.5188 1.3044 34 1 1.8869 -5.6360 0.9738 35 1 1.1955 -7.1481 -0.7266 36 1 0.6038 -8.7202 -2.8340 37 1 -0.6323 -8.9389 -1.5721 38 1 -0.4361 -10.3453 -4.2421 39 1 -1.8438 -10.6488 -3.1921 40 1 -1.8584 -9.6360 -6.0653 41 1 -2.4915 -11.1853 -5.4674 42 1 -4.5671 -10.5151 -6.6230 43 1 -6.7877 -9.5148 -6.3001 44 1 -7.1575 -7.9141 -4.4605 45 1 -5.3057 -7.3324 -2.9546 46 1 -2.9455 -8.7424 -2.0312 47 1 -2.8497 -7.1364 -2.7862 48 1 2.8304 -5.0941 -1.4950 49 1 1.8317 -3.7497 -2.1996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020976724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:28 Heat of formation + Delta-G solvation = -22.838341 kcal Electronic energy + Delta-G solvation = -27054.711221 eV Core-core repulsion = 23366.293678 eV Total energy + Delta-G solvation = -3688.417543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38842 -40.68827 -39.43116 -37.22094 -35.70089 -34.23902 -33.61614 -32.39936 -31.60515 -30.07633 -28.20499 -26.51249 -26.16071 -24.76421 -24.12807 -23.03986 -22.78203 -21.32530 -20.25557 -20.09834 -19.35580 -17.92442 -17.37482 -17.25979 -16.73693 -16.66104 -16.07760 -15.98115 -15.70574 -15.48704 -15.15572 -15.02851 -14.46901 -14.41858 -14.23502 -14.10639 -13.82931 -13.59358 -13.34766 -13.28331 -13.15497 -12.82110 -12.80676 -12.68113 -12.48277 -12.30814 -12.18475 -12.10147 -11.81037 -11.71743 -11.67229 -11.46072 -11.31675 -11.14696 -10.90655 -10.56572 -9.89707 -9.64771 -9.41222 -9.04290 -7.97272 -5.27135 0.46881 0.48256 1.45667 1.48291 1.56601 1.75537 2.33943 2.54073 2.85163 3.34813 3.62914 3.66361 3.74271 3.81739 3.89088 3.91545 4.04427 4.10158 4.14938 4.20461 4.30916 4.32260 4.36131 4.49235 4.54252 4.59721 4.68693 4.75634 4.80696 4.82996 4.84680 4.88371 5.00718 5.01816 5.11667 5.12821 5.14596 5.17402 5.24440 5.27059 5.35175 5.41072 5.50734 5.52151 5.62199 5.63949 5.74238 5.81463 6.16552 6.25303 6.72708 7.29479 7.44478 8.06238 8.27302 9.26407 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.002163 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.971052 B =12940.993126 C =14060.867359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.149 3.851 11 H 0.078 0.922 12 C -0.138 4.138 13 C 0.132 3.868 14 H 0.064 0.936 15 N -0.704 5.704 16 C 0.498 3.502 17 O -0.590 6.590 18 C -0.124 4.124 19 C -0.069 4.069 20 H 0.053 0.947 21 C -0.106 4.106 22 C -0.081 4.081 23 C -0.090 4.090 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.134 4.134 27 C -0.145 4.145 28 C -0.088 4.088 29 C -0.079 4.079 30 C -0.170 4.170 31 H 0.251 0.749 32 H 0.371 0.629 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -29.860 -7.572 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.374 4.374 8 H 0.101 0.899 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.096 0.904 12 C -0.177 4.177 13 C 0.026 3.974 14 H 0.083 0.917 15 N -0.356 5.356 16 C 0.287 3.713 17 O -0.471 6.471 18 C -0.164 4.164 19 C -0.088 4.088 20 H 0.072 0.928 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.090 4.090 24 C -0.147 4.147 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.163 4.163 28 C -0.088 4.088 29 C -0.116 4.116 30 C -0.212 4.212 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.131 0.869 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.125 0.875 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.441 -29.158 -7.929 30.412 hybrid contribution -0.419 1.634 0.105 1.690 sum -3.860 -27.524 -7.823 28.873 Atomic orbital electron populations 1.69849 1.06865 1.26119 1.59537 1.25667 0.96397 1.01489 1.03731 0.85084 0.77849 0.79174 0.77319 1.21704 1.22303 1.18773 1.19727 0.91706 0.85020 1.40975 0.89926 1.42406 1.05287 1.00971 1.87484 1.21269 0.95751 0.84598 0.94571 0.90427 1.23730 1.00021 0.99152 0.94823 1.22091 0.97166 0.81718 0.96416 0.91730 1.45930 1.40379 1.08405 1.40911 1.21637 0.78619 0.92605 0.78473 1.90712 1.45071 1.57533 1.53735 1.21812 1.02580 0.90290 1.01699 1.20848 0.92924 0.97766 0.97222 0.92805 1.21604 1.01007 0.94120 0.97626 1.20539 0.91150 1.01105 0.98931 1.19972 0.97102 0.97057 0.94914 1.21488 0.92731 1.00788 0.99646 1.21376 0.98034 0.97314 0.98280 1.21315 0.99275 0.98751 0.95862 1.21386 0.93661 1.00703 1.00520 1.19878 0.94918 0.96929 0.97093 1.20590 0.92809 1.01171 0.97046 1.24165 0.98179 0.99525 0.99359 0.94069 0.79792 0.92361 0.85498 0.74375 0.85515 0.86019 0.88762 0.90550 0.90629 0.88656 0.83969 0.83976 0.84869 0.86932 0.90284 0.92434 0.87497 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.86 13.06 21.65 0.28 -61.57 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.08 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.69 9.97 84.03 0.84 -12.85 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.72 -37.44 5.31 -320.45 -1.70 -39.14 16 10 C 0.15 5.70 4.56 45.52 0.21 5.90 16 11 H 0.08 2.80 8.10 -2.39 -0.02 2.79 16 12 C -0.14 -4.07 7.58 31.12 0.24 -3.83 16 13 C 0.13 4.29 4.12 45.52 0.19 4.48 16 14 H 0.06 2.77 7.46 -2.39 -0.02 2.75 16 15 N -0.70 -16.26 5.35 -440.04 -2.36 -18.62 16 16 C 0.50 13.00 7.59 87.66 0.67 13.67 16 17 O -0.59 -22.53 13.67 -3.04 -0.04 -22.57 16 18 C -0.12 -1.84 5.17 29.85 0.15 -1.69 16 19 C -0.07 -1.28 1.84 -10.78 -0.02 -1.30 16 20 H 0.05 1.32 7.90 -2.39 -0.02 1.31 16 21 C -0.11 -1.26 5.28 30.62 0.16 -1.10 16 22 C -0.08 -1.10 5.67 29.74 0.17 -0.93 16 23 C -0.09 -1.79 5.74 -19.86 -0.11 -1.90 16 24 C -0.13 -2.25 9.61 22.36 0.21 -2.04 16 25 C -0.13 -2.36 10.05 22.20 0.22 -2.14 16 26 C -0.13 -2.77 10.05 22.20 0.22 -2.55 16 27 C -0.14 -3.53 9.61 22.36 0.21 -3.32 16 28 C -0.09 -2.10 5.74 -19.86 -0.11 -2.22 16 29 C -0.08 -1.86 4.63 29.74 0.14 -1.72 16 30 C -0.17 -5.86 7.68 31.12 0.24 -5.62 16 31 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.37 21.08 7.90 -92.71 -0.73 20.35 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 2.54 8.12 -2.39 -0.02 2.52 16 35 H 0.42 5.78 8.73 -92.71 -0.81 4.97 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.12 1.15 8.11 -2.39 -0.02 1.13 16 38 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 39 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 42 H 0.14 1.70 8.05 -2.91 -0.02 1.68 16 43 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.11 2.75 8.05 -2.91 -0.02 2.73 16 46 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 47 H 0.06 1.80 6.23 -2.39 -0.01 1.79 16 48 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 49 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -78.83 392.70 1.71 -77.12 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.59 Total: 39.15 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.09 Total: -23.46 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.78 Total: -119.33 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.04 Total: -22.57 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.83 1.71 -77.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020976724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.285 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds