Wall clock time and date at job start Tue Mar 31 2020 16:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47358 * 269.99940 * 3 2 1 5 5 H 1.48496 * 109.47152 * 30.00516 * 3 2 1 6 6 H 1.48509 * 109.46950 * 149.99999 * 3 2 1 7 7 C 1.38815 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99501 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99833 * 179.97438 * 9 7 2 11 11 H 1.08992 * 112.85360 * 336.19500 * 10 9 7 12 12 C 1.53782 * 113.68881 * 107.46601 * 10 9 7 13 13 C 1.53785 * 87.08046 * 139.99036 * 12 10 9 14 14 H 1.09007 * 113.68510 * 220.00353 * 13 12 10 15 15 N 1.46492 * 113.61387 * 89.11600 * 13 12 10 16 16 C 1.34778 * 120.00158 * 107.50325 * 15 13 12 17 17 O 1.21282 * 120.00156 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00189 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47108 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.68128 * 304.47850 * 19 18 16 21 21 C 1.53327 * 109.68398 * 183.91654 * 19 18 16 22 22 C 1.52738 * 108.37532 * 170.35770 * 21 19 18 23 23 C 1.50631 * 110.58969 * 51.05800 * 22 21 19 24 24 C 1.38907 * 117.74898 * 162.52818 * 23 22 21 25 25 C 1.37934 * 120.54682 * 179.75587 * 24 23 22 26 26 C 1.38267 * 119.77264 * 0.02562 * 25 24 23 27 27 C 1.37936 * 119.76766 * 0.09479 * 26 25 24 28 28 C 1.37613 * 122.55546 * 342.43274 * 23 22 21 29 29 C 1.50635 * 122.60603 * 0.43859 * 28 23 22 30 30 C 1.53776 * 87.08042 * 334.56179 * 13 12 10 31 31 H 0.96996 * 119.99742 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99573 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61784 * 25.44085 * 12 10 9 34 34 H 1.09005 * 113.61097 * 254.53743 * 12 10 9 35 35 H 0.97002 * 120.00317 * 287.49957 * 15 13 12 36 36 H 1.08999 * 109.46987 * 60.00025 * 18 16 15 37 37 H 1.09000 * 109.46663 * 300.00124 * 18 16 15 38 38 H 1.09004 * 109.68150 * 290.07677 * 21 19 18 39 39 H 1.08996 * 109.68549 * 50.63038 * 21 19 18 40 40 H 1.09002 * 109.25318 * 171.34128 * 22 21 19 41 41 H 1.08997 * 109.24956 * 290.76645 * 22 21 19 42 42 H 1.07998 * 119.73029 * 359.78536 * 24 23 22 43 43 H 1.08001 * 120.11843 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11789 * 180.08196 * 26 25 24 45 45 H 1.08004 * 119.72755 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.25463 * 222.12574 * 29 28 23 47 47 H 1.08998 * 109.25222 * 102.65570 * 29 28 23 48 48 H 1.09005 * 113.61457 * 139.97911 * 30 13 12 49 49 H 1.08991 * 113.62165 * 270.80448 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 1 3.5277 -3.2970 0.4050 12 6 4.7875 -2.7944 -1.3431 13 6 5.9843 -3.3111 -0.5272 14 1 6.9519 -3.0459 -0.9532 15 7 5.8867 -4.7301 -0.1766 16 6 6.6769 -5.6321 -0.7917 17 8 7.4684 -5.2692 -1.6359 18 6 6.5769 -7.0919 -0.4307 19 6 7.5744 -7.8940 -1.2687 20 1 7.3998 -7.7048 -2.3279 21 6 7.4092 -9.3901 -0.9764 22 6 8.2383 -10.1736 -1.9920 23 6 9.6492 -9.6483 -2.0420 24 6 10.6205 -10.4575 -2.6177 25 6 11.9300 -10.0316 -2.6983 26 6 12.2799 -8.7895 -2.2018 27 6 11.3173 -7.9856 -1.6275 28 6 9.9976 -8.4131 -1.5454 29 6 8.9998 -7.4863 -0.9015 30 6 5.5259 -2.3660 0.5960 31 1 -0.4849 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 5.0151 -1.9121 -1.9411 34 1 4.2782 -3.5725 -1.9118 35 1 5.2534 -5.0206 0.4983 36 1 5.5661 -7.4473 -0.6310 37 1 6.8043 -7.2207 0.6275 38 1 7.7616 -9.6082 0.0318 39 1 6.3591 -9.6681 -1.0669 40 1 8.2563 -11.2254 -1.7064 41 1 7.7837 -10.0773 -2.9779 42 1 10.3481 -11.4278 -3.0058 43 1 12.6797 -10.6666 -3.1469 44 1 13.3033 -8.4500 -2.2632 45 1 11.5912 -7.0153 -1.2403 46 1 9.1820 -6.4678 -1.2444 47 1 9.1177 -7.5275 0.1813 48 1 5.6125 -2.7983 1.5929 49 1 5.9563 -1.3670 0.5289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020976725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:33 Heat of formation + Delta-G solvation = 1.215243 kcal Electronic energy + Delta-G solvation = -26921.447636 eV Core-core repulsion = 23234.073134 eV Total energy + Delta-G solvation = -3687.374502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.59709 -39.82123 -38.25311 -36.48180 -34.15107 -32.98135 -32.66544 -31.60025 -30.46681 -29.43025 -27.37858 -25.25682 -24.66094 -23.80229 -22.48713 -22.33764 -21.77412 -20.51647 -19.53394 -19.17905 -17.52140 -17.15213 -16.61692 -16.06809 -15.92496 -15.37714 -15.05800 -14.88132 -14.69575 -14.47068 -14.19555 -13.86821 -13.54180 -13.48569 -13.16620 -13.11443 -12.66265 -12.55724 -12.32212 -12.27909 -12.11606 -12.03047 -11.84190 -11.67026 -11.46379 -11.02934 -11.00802 -10.89326 -10.79466 -10.52633 -10.41777 -10.23334 -9.91364 -9.69286 -9.60098 -8.97384 -8.95192 -8.83678 -8.71169 -7.31499 -5.82361 -3.18262 1.15856 1.17760 2.64910 3.18271 3.34169 3.37270 3.42494 3.54054 4.30263 4.37275 4.53467 4.54434 4.69452 4.74216 4.80613 4.83988 4.91289 4.94781 5.07050 5.12032 5.18945 5.21388 5.24814 5.30335 5.38960 5.41656 5.43679 5.50805 5.60346 5.67515 5.67956 5.73465 5.73802 5.82751 5.86318 5.97090 6.08388 6.11939 6.16383 6.17146 6.29043 6.31435 6.42978 6.50590 6.50725 6.57008 6.82500 6.94434 7.56970 7.93159 8.27604 8.37186 9.14686 9.87385 10.06930 11.35714 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.001904 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.535475 B =14698.851702 C =15257.535074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.173 3.827 11 H 0.082 0.918 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.096 0.904 15 N -0.709 5.709 16 C 0.513 3.487 17 O -0.541 6.541 18 C -0.138 4.138 19 C -0.069 4.069 20 H 0.083 0.917 21 C -0.116 4.116 22 C -0.080 4.080 23 C -0.080 4.080 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.066 4.066 29 C -0.083 4.083 30 C -0.163 4.163 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.858 -22.416 -0.860 31.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.114 0.886 15 N -0.360 5.360 16 C 0.299 3.701 17 O -0.418 6.418 18 C -0.178 4.178 19 C -0.088 4.088 20 H 0.101 0.899 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.080 4.080 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.066 4.066 29 C -0.120 4.120 30 C -0.203 4.203 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 22.136 -22.185 -1.446 31.373 hybrid contribution 0.283 1.147 0.255 1.208 sum 22.418 -21.038 -1.192 30.766 Atomic orbital electron populations 1.69700 1.05133 1.25924 1.57157 1.24703 0.95272 0.97312 1.01798 0.86545 0.79193 0.84901 0.77850 1.21005 1.21682 1.20296 1.19121 0.80662 0.94759 1.43428 0.89176 1.42747 1.04111 1.01985 1.88775 1.21602 0.89414 0.90002 0.92864 0.90053 1.24263 0.96707 1.00808 1.00035 1.21767 0.99776 0.79581 0.97759 0.88620 1.45760 1.40710 1.07166 1.42317 1.20667 0.80124 0.88104 0.81175 1.90663 1.37440 1.81163 1.32538 1.21778 1.01994 0.91910 1.02129 1.20885 0.93744 0.93534 1.00661 0.89893 1.21633 0.99998 0.94398 0.99301 1.20457 0.91618 0.99387 1.00194 1.19624 0.95607 0.93927 0.98828 1.21136 0.93096 0.99663 1.00133 1.21029 0.96276 0.96568 1.00689 1.21061 0.99287 0.94711 0.99117 1.21220 0.92752 0.99882 0.99973 1.19700 0.94469 0.94160 0.98241 1.20702 0.92161 0.99582 0.99559 1.23876 0.99398 0.99360 0.97643 0.92996 0.80396 0.89770 0.92010 0.76471 0.88527 0.88823 0.91494 0.91103 0.90805 0.90565 0.86404 0.86355 0.86295 0.86215 0.88517 0.91183 0.91464 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.89 10.45 -15.06 -0.16 -7.05 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.74 -16.87 5.21 -52.64 -0.27 -17.15 16 10 C 0.17 3.10 4.35 -67.11 -0.29 2.80 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.18 -2.90 7.68 -25.92 -0.20 -3.10 16 13 C 0.12 1.62 4.32 -67.12 -0.29 1.33 16 14 H 0.10 1.41 7.46 -51.93 -0.39 1.02 16 15 N -0.71 -8.15 5.26 -53.02 -0.28 -8.43 16 16 C 0.51 6.04 7.58 -10.98 -0.08 5.96 16 17 O -0.54 -8.31 13.61 5.56 0.08 -8.24 16 18 C -0.14 -1.10 5.18 -27.88 -0.14 -1.25 16 19 C -0.07 -0.61 1.85 -90.59 -0.17 -0.78 16 20 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 21 C -0.12 -0.80 5.28 -26.70 -0.14 -0.94 16 22 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 23 C -0.08 -0.74 5.74 -104.64 -0.60 -1.34 16 24 C -0.12 -1.05 9.61 -39.45 -0.38 -1.43 16 25 C -0.13 -1.07 10.05 -39.68 -0.40 -1.47 16 26 C -0.12 -1.09 10.05 -39.68 -0.40 -1.49 16 27 C -0.12 -1.18 9.61 -39.42 -0.38 -1.56 16 28 C -0.07 -0.67 5.74 -104.61 -0.60 -1.27 16 29 C -0.08 -0.82 4.62 -28.05 -0.13 -0.95 16 30 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 32 H 0.36 8.19 5.79 -40.82 -0.24 7.96 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.73 8.70 -40.82 -0.36 3.38 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 40 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.12 0.77 8.05 -52.49 -0.42 0.35 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.05 8.05 -52.48 -0.42 0.63 16 46 H 0.10 1.16 6.14 -51.93 -0.32 0.84 16 47 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -33.14 389.50 -11.41 -44.55 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.06 Total: 10.16 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.81 Total: -15.74 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.22 Total: -53.70 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.14 -11.41 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020976725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.770 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds