Wall clock time and date at job start Tue Mar 31 2020 16:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47358 * 269.99940 * 3 2 1 5 5 H 1.48496 * 109.47152 * 30.00516 * 3 2 1 6 6 H 1.48509 * 109.46950 * 149.99999 * 3 2 1 7 7 C 1.38815 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99501 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00446 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99833 * 179.97438 * 9 7 2 11 11 H 1.08992 * 112.85360 * 336.19500 * 10 9 7 12 12 C 1.53782 * 113.68881 * 107.46601 * 10 9 7 13 13 C 1.53785 * 87.08046 * 139.99036 * 12 10 9 14 14 H 1.09007 * 113.68510 * 220.00353 * 13 12 10 15 15 N 1.46492 * 113.61387 * 89.11600 * 13 12 10 16 16 C 1.34778 * 120.00158 * 107.50325 * 15 13 12 17 17 O 1.21282 * 120.00156 * 359.97438 * 16 15 13 18 18 C 1.50704 * 120.00189 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47108 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.68128 * 304.47850 * 19 18 16 21 21 C 1.53327 * 109.68398 * 183.91654 * 19 18 16 22 22 C 1.52738 * 108.37532 * 170.35770 * 21 19 18 23 23 C 1.50631 * 110.58969 * 51.05800 * 22 21 19 24 24 C 1.38907 * 117.74898 * 162.52818 * 23 22 21 25 25 C 1.37934 * 120.54682 * 179.75587 * 24 23 22 26 26 C 1.38267 * 119.77264 * 0.02562 * 25 24 23 27 27 C 1.37936 * 119.76766 * 0.09479 * 26 25 24 28 28 C 1.37613 * 122.55546 * 342.43274 * 23 22 21 29 29 C 1.50635 * 122.60603 * 0.43859 * 28 23 22 30 30 C 1.53776 * 87.08042 * 334.56179 * 13 12 10 31 31 H 0.96996 * 119.99742 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99573 * 359.97438 * 9 7 2 33 33 H 1.08994 * 113.61784 * 25.44085 * 12 10 9 34 34 H 1.09005 * 113.61097 * 254.53743 * 12 10 9 35 35 H 0.97002 * 120.00317 * 287.49957 * 15 13 12 36 36 H 1.08999 * 109.46987 * 60.00025 * 18 16 15 37 37 H 1.09000 * 109.46663 * 300.00124 * 18 16 15 38 38 H 1.09004 * 109.68150 * 290.07677 * 21 19 18 39 39 H 1.08996 * 109.68549 * 50.63038 * 21 19 18 40 40 H 1.09002 * 109.25318 * 171.34128 * 22 21 19 41 41 H 1.08997 * 109.24956 * 290.76645 * 22 21 19 42 42 H 1.07998 * 119.73029 * 359.78536 * 24 23 22 43 43 H 1.08001 * 120.11843 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.11789 * 180.08196 * 26 25 24 45 45 H 1.08004 * 119.72755 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.25463 * 222.12574 * 29 28 23 47 47 H 1.08998 * 109.25222 * 102.65570 * 29 28 23 48 48 H 1.09005 * 113.61457 * 139.97911 * 30 13 12 49 49 H 1.08991 * 113.62165 * 270.80448 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 1 3.5277 -3.2970 0.4050 12 6 4.7875 -2.7944 -1.3431 13 6 5.9843 -3.3111 -0.5272 14 1 6.9519 -3.0459 -0.9532 15 7 5.8867 -4.7301 -0.1766 16 6 6.6769 -5.6321 -0.7917 17 8 7.4684 -5.2692 -1.6359 18 6 6.5769 -7.0919 -0.4307 19 6 7.5744 -7.8940 -1.2687 20 1 7.3998 -7.7048 -2.3279 21 6 7.4092 -9.3901 -0.9764 22 6 8.2383 -10.1736 -1.9920 23 6 9.6492 -9.6483 -2.0420 24 6 10.6205 -10.4575 -2.6177 25 6 11.9300 -10.0316 -2.6983 26 6 12.2799 -8.7895 -2.2018 27 6 11.3173 -7.9856 -1.6275 28 6 9.9976 -8.4131 -1.5454 29 6 8.9998 -7.4863 -0.9015 30 6 5.5259 -2.3660 0.5960 31 1 -0.4849 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 5.0151 -1.9121 -1.9411 34 1 4.2782 -3.5725 -1.9118 35 1 5.2534 -5.0206 0.4983 36 1 5.5661 -7.4473 -0.6310 37 1 6.8043 -7.2207 0.6275 38 1 7.7616 -9.6082 0.0318 39 1 6.3591 -9.6681 -1.0669 40 1 8.2563 -11.2254 -1.7064 41 1 7.7837 -10.0773 -2.9779 42 1 10.3481 -11.4278 -3.0058 43 1 12.6797 -10.6666 -3.1469 44 1 13.3033 -8.4500 -2.2632 45 1 11.5912 -7.0153 -1.2403 46 1 9.1820 -6.4678 -1.2444 47 1 9.1177 -7.5275 0.1813 48 1 5.6125 -2.7983 1.5929 49 1 5.9563 -1.3670 0.5289 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020976725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:32 Heat of formation + Delta-G solvation = -18.176411 kcal Electronic energy + Delta-G solvation = -26922.288521 eV Core-core repulsion = 23234.073134 eV Total energy + Delta-G solvation = -3688.215387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43463 -40.73058 -39.41352 -37.20495 -35.81883 -34.12473 -33.60391 -32.61675 -32.05306 -30.06608 -28.16251 -26.55981 -26.27530 -24.53723 -23.70435 -23.02733 -22.91547 -21.42137 -20.62905 -20.16275 -19.41037 -18.09157 -17.30734 -17.09348 -16.73910 -16.59580 -16.20844 -16.03189 -15.77969 -15.46463 -15.11552 -14.94099 -14.55996 -14.37060 -14.25617 -14.08344 -13.96933 -13.80980 -13.60722 -13.35147 -13.15471 -12.89852 -12.80620 -12.63691 -12.47711 -12.29586 -12.10081 -12.04382 -11.86068 -11.80160 -11.67859 -11.46526 -11.21969 -11.14331 -10.88959 -10.64742 -9.95681 -9.62456 -9.39363 -9.27595 -8.02543 -5.35536 0.48985 0.50352 1.38294 1.41536 1.48593 1.72480 2.25202 2.48488 2.87249 3.27556 3.63095 3.64020 3.73207 3.75260 3.79967 3.88089 4.05260 4.11291 4.16899 4.22308 4.25243 4.28337 4.34241 4.48962 4.55560 4.60175 4.69400 4.71217 4.79187 4.83341 4.87920 4.88632 4.94433 5.02349 5.11393 5.12837 5.14994 5.16618 5.18158 5.24947 5.28112 5.41844 5.52174 5.64399 5.65408 5.71565 5.77575 5.83211 6.18275 6.22598 6.66304 7.07835 7.36651 7.85125 8.03247 9.18710 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.001904 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.535475 B =14698.851702 C =15257.535074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.742 5.742 10 C 0.156 3.844 11 H 0.082 0.918 12 C -0.175 4.175 13 C 0.134 3.866 14 H 0.091 0.909 15 N -0.703 5.703 16 C 0.509 3.491 17 O -0.580 6.580 18 C -0.130 4.130 19 C -0.067 4.067 20 H 0.057 0.943 21 C -0.109 4.109 22 C -0.081 4.081 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.140 4.140 28 C -0.087 4.087 29 C -0.078 4.078 30 C -0.143 4.143 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.672 -23.906 0.046 33.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.173 1.173 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.383 5.383 10 C 0.046 3.954 11 H 0.100 0.900 12 C -0.217 4.217 13 C 0.027 3.973 14 H 0.109 0.891 15 N -0.355 5.355 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.169 4.169 19 C -0.086 4.086 20 H 0.075 0.925 21 C -0.147 4.147 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.087 4.087 29 C -0.115 4.115 30 C -0.182 4.182 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.137 0.863 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.002 -23.728 -0.521 33.755 hybrid contribution -0.237 1.478 -0.093 1.499 sum 23.764 -22.250 -0.614 32.561 Atomic orbital electron populations 1.69880 1.07130 1.26617 1.59746 1.25524 0.96130 1.01298 1.02795 0.85425 0.78809 0.79724 0.77914 1.20883 1.22372 1.17286 1.19111 0.82789 0.93467 1.41012 0.92266 1.42762 1.02461 1.03980 1.89095 1.21949 0.90812 0.88142 0.94464 0.90029 1.24165 0.97828 1.00471 0.99246 1.21465 0.98203 0.80987 0.96658 0.89136 1.45711 1.41030 1.06151 1.42570 1.21385 0.79079 0.89546 0.80227 1.90663 1.39035 1.81995 1.34292 1.21822 1.02975 0.88674 1.03445 1.20832 0.93235 0.95232 0.99284 0.92459 1.21611 1.01046 0.92485 0.99523 1.20522 0.90480 1.00346 1.00406 1.19930 0.96919 0.93737 0.98559 1.21463 0.93124 1.00466 0.99800 1.21367 0.96920 0.96609 1.00238 1.21328 0.99942 0.94968 0.98888 1.21405 0.93289 1.00325 1.00833 1.19883 0.94695 0.94908 0.99204 1.20607 0.92996 0.97987 0.99898 1.23700 0.95818 0.99962 0.98746 0.93423 0.80012 0.90624 0.92890 0.74910 0.86332 0.86108 0.90688 0.89311 0.89064 0.90660 0.84401 0.84196 0.84705 0.86288 0.91358 0.90349 0.89199 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.56 13.97 21.65 0.30 -62.25 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.95 44.99 27.74 68.60 1.90 46.89 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 7 C -0.23 -12.95 10.45 84.03 0.88 -12.08 16 8 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 9 N -0.74 -33.22 5.21 -320.44 -1.67 -34.89 16 10 C 0.16 5.37 4.35 45.52 0.20 5.56 16 11 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 12 C -0.18 -5.63 7.68 31.12 0.24 -5.39 16 13 C 0.13 3.48 4.32 45.52 0.20 3.67 16 14 H 0.09 2.55 7.46 -2.38 -0.02 2.53 16 15 N -0.70 -14.73 5.26 -440.04 -2.32 -17.05 16 16 C 0.51 11.30 7.58 87.66 0.66 11.96 16 17 O -0.58 -17.83 13.61 -3.03 -0.04 -17.87 16 18 C -0.13 -1.76 5.18 29.85 0.15 -1.60 16 19 C -0.07 -1.09 1.85 -10.77 -0.02 -1.11 16 20 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 21 C -0.11 -1.23 5.28 30.62 0.16 -1.07 16 22 C -0.08 -1.03 5.67 29.74 0.17 -0.86 16 23 C -0.09 -1.61 5.74 -19.87 -0.11 -1.72 16 24 C -0.13 -2.05 9.61 22.36 0.21 -1.83 16 25 C -0.13 -2.05 10.05 22.20 0.22 -1.83 16 26 C -0.13 -2.28 10.05 22.20 0.22 -2.05 16 27 C -0.14 -2.81 9.61 22.37 0.21 -2.59 16 28 C -0.09 -1.76 5.74 -19.86 -0.11 -1.87 16 29 C -0.08 -1.51 4.62 29.74 0.14 -1.38 16 30 C -0.14 -3.73 7.58 31.12 0.24 -3.49 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.37 15.79 5.79 -92.71 -0.54 15.25 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.41 6.56 8.70 -92.71 -0.81 5.75 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.07 0.76 8.10 -2.38 -0.02 0.74 16 39 H 0.09 0.71 8.13 -2.39 -0.02 0.69 16 40 H 0.09 0.84 8.13 -2.39 -0.02 0.82 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.14 1.50 8.05 -2.91 -0.02 1.48 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 44 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 45 H 0.12 2.22 8.05 -2.91 -0.02 2.20 16 46 H 0.07 1.71 6.14 -2.39 -0.01 1.70 16 47 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 48 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 49 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -74.11 389.50 1.86 -72.26 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.45 Total: 33.98 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 4.13 Total: -21.06 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.68 Total: -114.19 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Total: -74.11 1.86 -72.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020976725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.081 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds