Wall clock time and date at job start Tue Mar 31 2020 16:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99457 * 2 1 4 4 H 1.48500 * 109.46879 * 270.00182 * 3 2 1 5 5 H 1.48499 * 109.47211 * 30.00078 * 3 2 1 6 6 H 1.48496 * 109.47166 * 150.00626 * 3 2 1 7 7 C 1.38810 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99952 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99841 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00004 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84552 * 23.80543 * 10 9 7 12 12 C 1.53776 * 113.61697 * 154.99960 * 10 9 7 13 13 C 1.53780 * 87.08049 * 89.20381 * 12 10 9 14 14 H 1.09008 * 113.61240 * 270.88379 * 13 12 10 15 15 N 1.46497 * 113.61359 * 140.06775 * 13 12 10 16 16 C 1.34782 * 119.99695 * 156.53005 * 15 13 12 17 17 O 1.21277 * 120.00164 * 359.97438 * 16 15 13 18 18 C 1.50697 * 119.99876 * 179.97438 * 16 15 13 19 19 H 1.09004 * 109.63602 * 266.33114 * 18 16 15 20 20 C 1.53068 * 109.63969 * 145.92193 * 18 16 15 21 21 C 1.51915 * 110.76442 * 325.59881 * 20 18 16 22 22 C 1.51590 * 114.60156 * 292.11753 * 21 20 18 23 23 C 1.53067 * 110.94353 * 68.09612 * 22 21 20 24 24 C 1.51466 * 108.46454 * 274.42196 * 23 22 21 25 25 C 1.38393 * 119.52334 * 250.66707 * 24 23 22 26 26 C 1.38293 * 119.61636 * 180.02562 * 25 24 23 27 27 C 1.38253 * 120.05941 * 359.97438 * 26 25 24 28 28 C 1.38295 * 120.05726 * 359.97438 * 27 26 25 29 29 C 1.37037 * 120.15464 * 70.70642 * 24 23 22 30 30 C 1.53781 * 87.17140 * 25.47465 * 13 12 10 31 31 H 0.96998 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00272 * 0.02562 * 9 7 2 33 33 H 1.09006 * 113.61459 * 334.65348 * 12 10 9 34 34 H 1.08997 * 113.61883 * 203.74926 * 12 10 9 35 35 H 0.96989 * 120.00227 * 336.52383 * 15 13 12 36 36 H 1.09003 * 109.18871 * 86.28526 * 20 18 16 37 37 H 1.09008 * 109.18039 * 205.52997 * 20 18 16 38 38 H 1.08998 * 108.42363 * 170.77360 * 21 20 18 39 39 H 1.08994 * 108.38016 * 53.43221 * 21 20 18 40 40 H 1.09003 * 109.18657 * 307.72053 * 22 21 20 41 41 H 1.08998 * 109.18630 * 188.47358 * 22 21 20 42 42 H 1.08998 * 109.64133 * 154.72614 * 23 22 21 43 43 H 1.09003 * 109.80773 * 34.20935 * 23 22 21 44 44 H 1.07997 * 120.19069 * 0.08370 * 25 24 23 45 45 H 1.08004 * 119.96815 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.97194 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.18950 * 180.02562 * 28 27 26 48 48 H 1.08997 * 113.61099 * 89.07492 * 30 13 12 49 49 H 1.09000 * 113.61177 * 219.97536 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2019 -0.0011 10 6 4.1123 -2.4706 -0.0011 11 1 3.5279 -3.2968 -0.4061 12 6 5.5260 -2.3656 -0.5971 13 6 6.0134 -2.0253 0.8211 14 1 5.9887 -0.9592 1.0472 15 7 7.2919 -2.6509 1.1681 16 6 8.0683 -2.1099 2.1279 17 8 7.7088 -1.1050 2.7038 18 6 9.3831 -2.7537 2.4852 19 1 9.2408 -3.4370 3.3226 20 6 10.3973 -1.6735 2.8694 21 6 10.1795 -0.4139 2.0485 22 6 10.4979 -0.5590 0.5735 23 6 9.4960 -1.4901 -0.1136 24 6 9.9712 -2.9178 0.0595 25 6 10.4585 -3.6117 -1.0343 26 6 10.8924 -4.9155 -0.8785 27 6 10.8390 -5.5194 0.3640 28 6 10.3521 -4.8205 1.4535 29 6 9.9176 -3.5167 1.2909 30 6 4.7890 -2.7946 1.3443 31 1 -0.4851 0.8400 0.0004 32 1 3.8646 -0.3619 -0.0007 33 1 5.6409 -1.5462 -1.3068 34 1 5.9116 -3.3121 -0.9759 35 1 7.5795 -3.4544 0.7073 36 1 10.2892 -1.4411 3.9288 37 1 11.4049 -2.0471 2.6865 38 1 10.8044 0.3783 2.4608 39 1 9.1364 -0.1142 2.1491 40 1 11.5019 -0.9686 0.4624 41 1 10.4579 0.4221 0.1003 42 1 9.4399 -1.2488 -1.1750 43 1 8.5121 -1.3739 0.3410 44 1 10.5005 -3.1374 -2.0036 45 1 11.2733 -5.4625 -1.7283 46 1 11.1779 -6.5379 0.4839 47 1 10.3098 -5.2900 2.4252 48 1 4.9735 -3.8582 1.4953 49 1 4.3094 -2.3213 2.2011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021103046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:32 Heat of formation + Delta-G solvation = 29.703705 kcal Electronic energy + Delta-G solvation = -29092.631984 eV Core-core repulsion = 25406.492835 eV Total energy + Delta-G solvation = -3686.139149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56058 -39.28596 -38.26156 -35.97605 -34.30212 -33.49401 -32.79855 -31.33659 -30.25572 -29.94732 -26.51902 -25.23694 -24.69873 -24.06929 -22.71881 -22.58268 -21.48196 -20.46997 -19.88128 -18.81717 -17.69437 -17.32824 -16.61236 -16.28417 -16.15619 -15.13926 -14.95313 -14.72864 -14.63586 -14.31066 -14.24325 -13.85816 -13.45280 -13.40851 -13.06387 -12.99876 -12.78817 -12.63064 -12.49419 -12.18078 -12.08212 -12.00198 -11.91149 -11.37585 -11.13774 -10.94952 -10.85854 -10.80403 -10.66904 -10.48127 -10.39184 -10.23807 -9.91831 -9.64133 -9.52979 -9.07344 -8.93972 -8.80981 -8.64531 -7.31279 -5.79671 -3.16361 1.04862 1.10921 2.61626 3.24850 3.38243 3.42459 3.46169 3.47954 4.25071 4.42439 4.57685 4.62630 4.63734 4.71174 4.79185 4.87181 4.90034 5.00351 5.05719 5.09554 5.11345 5.19056 5.21452 5.39787 5.40601 5.48392 5.55483 5.66135 5.67678 5.69563 5.76493 5.77141 5.93178 5.95911 6.00710 6.05330 6.08105 6.10001 6.17450 6.23267 6.24071 6.41721 6.45541 6.51435 6.59498 6.69116 6.71554 6.89255 7.57950 7.97010 8.27009 8.39569 9.16979 9.89389 10.07774 11.38214 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017004 B = 0.003348 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.307064 B = 8362.080766 C = 8929.903410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.729 5.729 10 C 0.177 3.823 11 H 0.077 0.923 12 C -0.164 4.164 13 C 0.120 3.880 14 H 0.110 0.890 15 N -0.715 5.715 16 C 0.527 3.473 17 O -0.532 6.532 18 C -0.068 4.068 19 H 0.108 0.892 20 C -0.089 4.089 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.063 4.063 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.108 4.108 29 C -0.088 4.088 30 C -0.182 4.182 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.399 0.601 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.344 -10.177 0.680 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.369 5.369 10 C 0.065 3.935 11 H 0.095 0.905 12 C -0.204 4.204 13 C 0.016 3.984 14 H 0.127 0.873 15 N -0.366 5.366 16 C 0.314 3.686 17 O -0.410 6.410 18 C -0.090 4.090 19 H 0.126 0.874 20 C -0.126 4.126 21 C -0.191 4.191 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.063 4.063 25 C -0.134 4.134 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.126 4.126 29 C -0.088 4.088 30 C -0.224 4.224 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.091 0.909 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.786 -9.477 1.087 28.434 hybrid contribution 0.884 0.658 -0.191 1.118 sum 27.670 -8.819 0.896 29.055 Atomic orbital electron populations 1.69693 1.05111 1.25958 1.57078 1.24666 0.95236 0.97230 1.01685 0.86596 0.79446 0.84999 0.77850 1.20964 1.21581 1.20117 1.19091 0.80313 0.94868 1.43549 0.88970 1.42531 1.04052 1.01539 1.88761 1.20903 0.89728 0.90195 0.92711 0.90541 1.23888 0.99047 1.01778 0.95652 1.22663 0.80919 0.98684 0.96130 0.87257 1.46402 1.21198 1.30292 1.38726 1.20163 0.85117 0.84203 0.79084 1.90643 1.73434 1.24688 1.52244 1.20629 0.93290 0.98134 0.96900 0.87376 1.21084 0.97144 0.94104 1.00315 1.21583 1.05878 0.97393 0.94279 1.21187 0.98613 0.99052 0.95664 1.21464 1.01389 0.90460 1.01901 1.19685 0.97877 0.96121 0.92603 1.21157 0.99301 0.94626 0.98334 1.21185 0.99691 0.95164 0.97428 1.21122 1.00448 0.99935 0.92877 1.21116 0.98882 0.93613 0.99035 1.19425 1.01143 0.94335 0.93922 1.24310 0.96809 0.99242 1.02069 0.92954 0.80401 0.90956 0.89937 0.76532 0.90868 0.91474 0.92370 0.88182 0.92422 0.91723 0.91040 0.87956 0.85897 0.86142 0.86093 0.85817 0.90885 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 7 C -0.25 -6.97 10.45 -15.06 -0.16 -7.12 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 N -0.73 -17.06 5.12 -52.51 -0.27 -17.32 16 10 C 0.18 3.29 4.56 -66.98 -0.31 2.98 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 13 C 0.12 1.83 3.86 -67.12 -0.26 1.57 16 14 H 0.11 1.97 7.50 -51.92 -0.39 1.58 16 15 N -0.72 -8.94 3.45 -53.02 -0.18 -9.12 16 16 C 0.53 6.99 4.22 -10.98 -0.05 6.95 16 17 O -0.53 -9.08 13.63 5.56 0.08 -9.00 16 18 C -0.07 -0.69 2.96 -92.51 -0.27 -0.96 16 19 H 0.11 0.94 7.92 -51.93 -0.41 0.53 16 20 C -0.09 -0.87 5.27 -27.25 -0.14 -1.02 16 21 C -0.15 -1.71 5.09 -28.00 -0.14 -1.86 16 22 C -0.11 -1.09 5.65 -27.41 -0.15 -1.25 16 23 C -0.11 -1.20 5.29 -27.47 -0.15 -1.34 16 24 C -0.06 -0.60 4.02 -104.62 -0.42 -1.02 16 25 C -0.12 -0.99 9.69 -39.50 -0.38 -1.37 16 26 C -0.12 -0.89 10.05 -39.56 -0.40 -1.29 16 27 C -0.13 -0.93 10.05 -39.55 -0.40 -1.33 16 28 C -0.11 -0.86 9.69 -39.50 -0.38 -1.24 16 29 C -0.09 -0.81 3.58 -104.63 -0.37 -1.18 16 30 C -0.18 -3.05 7.70 -25.78 -0.20 -3.25 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.45 5.76 -40.82 -0.24 8.21 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.40 4.31 6.91 -40.82 -0.28 4.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.59 7.86 -51.92 -0.41 0.18 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.41 4.67 -51.93 -0.24 1.17 16 40 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 43 H 0.10 1.26 3.49 -51.93 -0.18 1.08 16 44 H 0.12 0.90 7.97 -52.49 -0.42 0.49 16 45 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 46 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.12 0.77 7.97 -52.49 -0.42 0.35 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.21 373.20 -10.79 -43.00 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.62 Total: 12.88 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -4.48 Total: -15.17 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.32 Total: -54.90 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.21 -10.79 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021103046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.705 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds