Wall clock time and date at job start Tue Mar 31 2020 16:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48501 * 109.47232 * 240.00448 * 3 2 1 5 5 H 1.48504 * 109.47088 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47087 * 120.00392 * 3 2 1 7 7 C 1.38810 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00274 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99466 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99693 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84991 * 23.80665 * 10 9 7 12 12 C 1.53782 * 113.61683 * 154.99944 * 10 9 7 13 13 C 1.53781 * 87.07897 * 89.11918 * 12 10 9 14 14 H 1.09000 * 113.61402 * 270.80327 * 13 12 10 15 15 N 1.46501 * 113.61426 * 139.98721 * 13 12 10 16 16 C 1.34771 * 119.99993 * 155.00020 * 15 13 12 17 17 O 1.21275 * 120.00266 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99867 * 179.97438 * 16 15 13 19 19 H 1.08996 * 109.63758 * 93.61829 * 18 16 15 20 20 C 1.53077 * 109.64041 * 214.03272 * 18 16 15 21 21 C 1.51595 * 110.93811 * 34.32088 * 20 18 16 22 22 C 1.51583 * 114.43204 * 68.11954 * 21 20 18 23 23 C 1.53076 * 110.94281 * 291.85638 * 22 21 20 24 24 C 1.51459 * 108.44705 * 85.60458 * 23 22 21 25 25 C 1.38386 * 119.52222 * 109.34146 * 24 23 22 26 26 C 1.38291 * 119.61610 * 180.02562 * 25 24 23 27 27 C 1.38259 * 120.05807 * 0.02750 * 26 25 24 28 28 C 1.38286 * 120.05783 * 359.96983 * 27 26 25 29 29 C 1.37048 * 120.14633 * 289.31910 * 24 23 22 30 30 C 1.53774 * 113.61895 * 252.50080 * 10 9 7 31 31 H 0.97006 * 119.99998 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00616 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.61320 * 334.57418 * 12 10 9 34 34 H 1.09001 * 113.69616 * 203.68099 * 12 10 9 35 35 H 0.96998 * 119.99711 * 334.99683 * 15 13 12 36 36 H 1.08991 * 109.18665 * 154.69975 * 20 18 16 37 37 H 1.09004 * 109.17952 * 273.99672 * 20 18 16 38 38 H 1.08997 * 108.49183 * 189.40295 * 21 20 18 39 39 H 1.09004 * 108.48663 * 306.99536 * 21 20 18 40 40 H 1.08996 * 109.18968 * 52.23350 * 22 21 20 41 41 H 1.09003 * 109.18456 * 171.53418 * 22 21 20 42 42 H 1.08995 * 109.64489 * 205.29187 * 23 22 21 43 43 H 1.08997 * 109.64060 * 325.71398 * 23 22 21 44 44 H 1.08001 * 120.19011 * 0.03880 * 25 24 23 45 45 H 1.08011 * 119.97341 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.97400 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.19458 * 180.02562 * 28 27 26 48 48 H 1.09002 * 113.62252 * 156.33527 * 30 10 9 49 49 H 1.09002 * 113.61697 * 25.43284 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 3.0660 -3.5639 0.4031 12 6 1.2608 -4.8290 0.5939 13 6 0.7201 -5.0787 -0.8239 14 1 -0.1916 -4.5246 -1.0474 15 7 0.6232 -6.4981 -1.1735 16 6 -0.2567 -6.9027 -2.1107 17 8 -0.9686 -6.0920 -2.6643 18 6 -0.3558 -8.3628 -2.4707 19 1 -1.1385 -8.8343 -1.8764 20 6 -0.6842 -8.5045 -3.9591 21 6 -0.0284 -7.4013 -4.7660 22 6 1.4838 -7.4840 -4.8281 23 6 2.1039 -7.2045 -3.4568 24 6 2.1339 -8.4992 -2.6714 25 6 3.3458 -9.1219 -2.4293 26 6 3.3754 -10.3044 -1.7129 27 6 2.1994 -10.8592 -1.2431 28 6 0.9914 -10.2322 -1.4883 29 6 0.9682 -9.0482 -2.2045 30 6 1.9983 -4.4014 -1.3457 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 0.4949 -4.5195 1.3051 34 1 1.8867 -5.6377 0.9713 35 1 1.1925 -7.1466 -0.7304 36 1 -0.3251 -9.4702 -4.3148 37 1 -1.7646 -8.4523 -4.0941 38 1 -0.4188 -7.4381 -5.7830 39 1 -0.3023 -6.4421 -4.3264 40 1 1.7749 -8.4819 -5.1560 41 1 1.8537 -6.7498 -5.5439 42 1 3.1193 -6.8292 -3.5834 43 1 1.5034 -6.4650 -2.9270 44 1 4.2631 -8.6868 -2.7974 45 1 4.3181 -10.7956 -1.5209 46 1 2.2240 -11.7830 -0.6841 47 1 0.0715 -10.6634 -1.1220 48 1 2.8271 -5.0926 -1.4993 49 1 1.8279 -3.7469 -2.2005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021103048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:35 Heat of formation + Delta-G solvation = 25.277877 kcal Electronic energy + Delta-G solvation = -29118.813067 eV Core-core repulsion = 25432.482000 eV Total energy + Delta-G solvation = -3686.331067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47818 -39.17155 -38.12477 -35.90804 -34.16086 -33.41813 -32.74169 -31.24674 -29.89246 -29.63209 -26.43715 -25.13795 -24.54007 -24.02911 -22.89407 -22.55762 -21.38218 -20.38081 -19.78480 -18.56236 -17.43718 -17.20614 -16.53061 -16.18579 -15.94955 -15.05957 -14.86214 -14.70740 -14.58496 -14.21848 -13.94661 -13.84850 -13.42871 -13.31833 -13.05040 -12.93646 -12.74185 -12.57008 -12.37637 -11.99548 -11.93382 -11.78087 -11.62888 -11.27563 -11.05639 -10.85719 -10.78066 -10.75898 -10.55909 -10.41321 -10.22301 -10.15113 -9.79180 -9.70178 -9.46571 -9.00413 -8.89887 -8.72723 -8.54471 -6.99460 -5.78115 -3.08116 1.11286 1.17627 2.71312 3.35054 3.44119 3.48402 3.49671 3.55041 4.32771 4.50746 4.57060 4.70850 4.71460 4.78557 4.86506 4.97949 5.03164 5.13702 5.14654 5.18977 5.26053 5.28733 5.41802 5.47682 5.48311 5.58324 5.63240 5.74876 5.76003 5.85251 5.88744 5.99955 6.04817 6.05405 6.11330 6.16148 6.21556 6.21814 6.26307 6.29641 6.37993 6.50286 6.56231 6.66426 6.75137 6.78306 6.81145 7.05390 7.68037 7.70788 8.37464 8.40133 9.50795 10.07315 10.41373 11.43963 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.003104 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.196805 B = 9018.160505 C = 9473.801931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.165 4.165 13 C 0.123 3.877 14 H 0.114 0.886 15 N -0.716 5.716 16 C 0.525 3.475 17 O -0.531 6.531 18 C -0.069 4.069 19 H 0.108 0.892 20 C -0.089 4.089 21 C -0.155 4.155 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.061 4.061 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.127 4.127 28 C -0.109 4.109 29 C -0.088 4.088 30 C -0.183 4.183 31 H 0.257 0.743 32 H 0.386 0.614 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.069 0.931 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.802 -25.014 -5.062 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.059 3.941 11 H 0.085 0.915 12 C -0.205 4.205 13 C 0.019 3.981 14 H 0.132 0.868 15 N -0.366 5.366 16 C 0.313 3.687 17 O -0.408 6.408 18 C -0.090 4.090 19 H 0.125 0.875 20 C -0.126 4.126 21 C -0.191 4.191 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.061 4.061 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.145 4.145 28 C -0.127 4.127 29 C -0.088 4.088 30 C -0.225 4.225 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.370 -24.221 -5.441 25.052 hybrid contribution 0.508 0.318 0.177 0.625 sum 3.879 -23.903 -5.265 24.782 Atomic orbital electron populations 1.69658 1.05140 1.25953 1.57025 1.24773 0.95517 0.97793 1.02604 0.86250 0.78522 0.83419 0.77863 1.21187 1.21674 1.21207 1.19221 0.91060 0.83925 1.43477 0.91011 1.42181 1.05742 0.99367 1.87029 1.20899 0.95194 0.85407 0.92594 0.91480 1.23890 1.00750 0.99926 0.95891 1.22659 0.99749 0.79677 0.96033 0.86841 1.46411 1.39772 1.09929 1.40525 1.20149 0.79312 0.90042 0.79213 1.90650 1.43514 1.55012 1.51666 1.20631 0.95826 0.92928 0.99602 0.87453 1.21028 1.01038 0.99330 0.91241 1.21536 0.94832 1.02299 1.00480 1.21192 0.95686 1.01400 0.96237 1.21521 1.02885 0.95080 0.95943 1.19712 0.92420 0.96863 0.97107 1.21163 0.97335 0.95688 0.99273 1.21178 0.98212 0.96006 0.98122 1.21105 0.92509 1.00168 1.00723 1.21108 0.98180 0.94898 0.98526 1.19432 0.93857 0.96072 0.99438 1.24316 0.96259 0.99679 1.02295 0.93326 0.77979 0.90926 0.90460 0.76714 0.91521 0.90961 0.92382 0.88023 0.92568 0.91707 0.91083 0.87372 0.85900 0.86196 0.86163 0.85873 0.91227 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.70 -17.55 5.31 -52.64 -0.28 -17.83 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.04 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.16 -2.62 7.58 -25.92 -0.20 -2.82 16 13 C 0.12 2.00 4.04 -67.12 -0.27 1.73 16 14 H 0.11 2.23 7.46 -51.93 -0.39 1.85 16 15 N -0.72 -9.56 3.53 -53.02 -0.19 -9.74 16 16 C 0.53 7.39 4.22 -10.99 -0.05 7.34 16 17 O -0.53 -9.51 13.61 5.56 0.08 -9.43 16 18 C -0.07 -0.74 2.96 -92.51 -0.27 -1.01 16 19 H 0.11 0.98 7.91 -51.93 -0.41 0.57 16 20 C -0.09 -0.93 5.23 -27.40 -0.14 -1.08 16 21 C -0.15 -1.86 5.10 -28.16 -0.14 -2.00 16 22 C -0.11 -1.20 5.65 -27.41 -0.15 -1.35 16 23 C -0.12 -1.35 5.29 -27.47 -0.15 -1.49 16 24 C -0.06 -0.63 4.04 -104.63 -0.42 -1.05 16 25 C -0.12 -1.08 9.69 -39.51 -0.38 -1.46 16 26 C -0.12 -0.96 10.05 -39.55 -0.40 -1.36 16 27 C -0.13 -1.00 10.05 -39.56 -0.40 -1.40 16 28 C -0.11 -0.92 9.69 -39.50 -0.38 -1.30 16 29 C -0.09 -0.86 3.58 -104.62 -0.37 -1.24 16 30 C -0.18 -3.15 6.87 -25.92 -0.18 -3.33 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.39 10.31 7.90 -40.82 -0.32 9.98 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.40 4.63 6.95 -40.82 -0.28 4.34 16 36 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.55 4.66 -51.93 -0.24 1.31 16 40 H 0.06 0.58 7.85 -51.93 -0.41 0.18 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.11 1.46 2.78 -51.93 -0.14 1.32 16 44 H 0.12 1.00 7.97 -52.49 -0.42 0.58 16 45 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 47 H 0.12 0.82 7.97 -52.49 -0.42 0.40 16 48 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 49 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -31.15 374.97 -11.13 -42.28 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.62 Total: 15.34 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -4.46 Total: -16.12 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.26 Total: -55.05 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.15 -11.13 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021103048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.557 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds