Wall clock time and date at job start Tue Mar 31 2020 16:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00227 * 2 1 4 4 H 1.48500 * 109.47354 * 270.00844 * 3 2 1 5 5 H 1.48496 * 109.46631 * 30.00609 * 3 2 1 6 6 H 1.48496 * 109.46866 * 150.00247 * 3 2 1 7 7 C 1.38814 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99825 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00263 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00208 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84582 * 314.82708 * 10 9 7 12 12 C 1.53781 * 113.61490 * 86.02494 * 10 9 7 13 13 C 1.53779 * 87.08200 * 89.19744 * 12 10 9 14 14 H 1.09002 * 113.60999 * 140.06180 * 13 12 10 15 15 N 1.46491 * 113.61852 * 270.88353 * 13 12 10 16 16 C 1.34777 * 120.00259 * 201.66416 * 15 13 12 17 17 O 1.21280 * 120.00122 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00077 * 179.72360 * 16 15 13 19 19 C 1.51592 * 108.49389 * 305.14966 * 18 16 15 20 20 C 1.53072 * 110.93750 * 170.60816 * 19 18 16 21 21 C 1.51450 * 108.44975 * 85.56928 * 20 19 18 22 22 C 1.38393 * 119.51622 * 109.28221 * 21 20 19 23 23 C 1.38290 * 119.62098 * 179.97438 * 22 21 20 24 24 C 1.38254 * 120.06028 * 359.95095 * 23 22 21 25 25 C 1.38294 * 120.05486 * 0.06373 * 24 23 22 26 26 C 1.37044 * 120.16625 * 289.25548 * 21 20 19 27 27 C 1.51450 * 120.14472 * 0.05524 * 26 21 20 28 28 C 1.51591 * 108.49163 * 180.27638 * 18 16 15 29 29 C 1.53783 * 113.69068 * 183.56001 * 10 9 7 30 30 H 0.96999 * 119.99689 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99744 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.61072 * 334.65314 * 12 10 9 33 33 H 1.08994 * 113.68772 * 203.76138 * 12 10 9 34 34 H 0.97006 * 120.00028 * 21.66975 * 15 13 12 35 35 H 1.09003 * 108.42500 * 62.63543 * 18 16 15 36 36 H 1.09007 * 109.18588 * 290.98226 * 19 18 16 37 37 H 1.09000 * 109.18482 * 50.23094 * 19 18 16 38 38 H 1.09000 * 109.63526 * 325.88176 * 20 19 18 39 39 H 1.09000 * 109.81296 * 205.36157 * 20 19 18 40 40 H 1.08001 * 120.18727 * 359.91575 * 22 21 20 41 41 H 1.08001 * 119.96828 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.97358 * 180.02562 * 24 23 22 43 43 H 1.08004 * 120.19278 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.64203 * 310.98229 * 27 26 21 45 45 H 1.09002 * 109.82031 * 190.45168 * 27 26 21 46 46 H 1.08995 * 109.18515 * 309.80775 * 28 18 16 47 47 H 1.08997 * 109.18302 * 69.05659 * 28 18 16 48 48 H 1.08996 * 113.61341 * 156.32410 * 29 10 9 49 49 H 1.08998 * 113.61503 * 25.42093 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4478 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.7107 -3.1914 0.7117 12 6 4.3350 -3.0536 -1.4067 13 6 5.6399 -2.2413 -1.4508 14 1 6.4716 -2.7758 -1.9098 15 7 5.4706 -0.8872 -1.9837 16 6 6.5300 -0.2240 -2.4879 17 8 7.6235 -0.7484 -2.5009 18 6 6.3546 1.1665 -3.0417 19 6 5.2686 1.1296 -4.0987 20 6 4.8811 2.5449 -4.5344 21 6 5.8336 2.9882 -5.6253 22 6 5.3745 3.1035 -6.9258 23 6 6.2422 3.5087 -7.9235 24 6 7.5599 3.7971 -7.6204 25 6 8.0129 3.6797 -6.3190 26 6 7.1400 3.2732 -5.3250 27 6 7.6383 3.1451 -3.9006 28 6 7.6989 1.6584 -3.5406 29 6 5.6383 -2.3033 0.0857 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 3.5935 -2.7287 -2.1366 33 1 4.4916 -4.1322 -1.4138 34 1 4.5959 -0.4679 -1.9735 35 1 6.0254 1.8201 -2.2338 36 1 5.6302 0.5746 -4.9645 37 1 4.3908 0.6267 -3.6930 38 1 4.9562 3.2232 -3.6846 39 1 3.8601 2.5474 -4.9161 40 1 4.3448 2.8775 -7.1603 41 1 5.8900 3.6002 -8.9404 42 1 8.2362 4.1138 -8.4005 43 1 9.0419 3.9041 -6.0797 44 1 6.9535 3.6579 -3.2253 45 1 8.6328 3.5832 -3.8162 46 1 8.4466 1.5087 -2.7619 47 1 7.9838 1.0874 -4.4242 48 1 6.1513 -3.1768 0.4880 49 1 5.9490 -1.3727 0.5606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022339275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:26 Heat of formation + Delta-G solvation = 8.152717 kcal Electronic energy + Delta-G solvation = -28647.812319 eV Core-core repulsion = 24960.738649 eV Total energy + Delta-G solvation = -3687.073670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66634 -39.73228 -38.26642 -36.09638 -33.84070 -33.28169 -32.64678 -31.48936 -30.48520 -29.71125 -26.53453 -25.31491 -24.54512 -24.05476 -22.86355 -22.32040 -21.16955 -20.18581 -19.77705 -19.00140 -17.65157 -17.19664 -16.74485 -15.92951 -15.41894 -15.22138 -15.13959 -14.83399 -14.63279 -14.17635 -14.14572 -13.82618 -13.67990 -13.36703 -13.15010 -12.88167 -12.82934 -12.49890 -12.21026 -12.10223 -12.02930 -11.81813 -11.72701 -11.58443 -11.10148 -11.06963 -10.94688 -10.78287 -10.77215 -10.53718 -10.46745 -10.34081 -9.74118 -9.66914 -9.52108 -9.02447 -8.91247 -8.72367 -8.65570 -7.40213 -5.89071 -3.26301 1.25157 1.25648 2.80046 3.20638 3.26118 3.31964 3.40033 3.63481 4.43713 4.44867 4.56033 4.66900 4.78250 4.79803 4.85200 4.89981 4.97166 5.08542 5.13508 5.21365 5.23669 5.28462 5.33640 5.37296 5.47662 5.53879 5.58647 5.61658 5.63081 5.64969 5.74124 5.88292 5.94536 6.01668 6.03779 6.06173 6.15325 6.18800 6.21632 6.23589 6.37233 6.38926 6.45062 6.56350 6.59689 6.72038 6.89508 6.95379 7.80685 7.88918 8.30696 8.44481 9.07347 9.79136 9.98478 11.28964 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003826 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.593576 B = 7315.883715 C = 8601.576511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.093 0.907 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.176 4.176 13 C 0.124 3.876 14 H 0.091 0.909 15 N -0.704 5.704 16 C 0.515 3.485 17 O -0.549 6.549 18 C -0.106 4.106 19 C -0.108 4.108 20 C -0.082 4.082 21 C -0.076 4.076 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.076 4.076 27 C -0.082 4.082 28 C -0.092 4.092 29 C -0.165 4.165 30 H 0.261 0.739 31 H 0.360 0.640 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.408 0.592 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.787 5.784 -11.968 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.057 3.943 11 H 0.078 0.922 12 C -0.217 4.217 13 C 0.018 3.982 14 H 0.109 0.891 15 N -0.357 5.357 16 C 0.301 3.699 17 O -0.427 6.427 18 C -0.128 4.128 19 C -0.146 4.146 20 C -0.119 4.119 21 C -0.076 4.076 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.076 4.076 27 C -0.119 4.119 28 C -0.130 4.130 29 C -0.204 4.204 30 H 0.071 0.929 31 H 0.194 0.806 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.281 5.345 -11.947 20.120 hybrid contribution 0.014 1.446 -0.018 1.446 sum 15.296 6.791 -11.965 20.573 Atomic orbital electron populations 1.69683 1.05033 1.25898 1.56948 1.24660 0.95186 0.96961 1.01907 0.86754 0.79553 0.85537 0.78108 1.20508 1.21406 1.20301 1.19061 0.80268 0.94870 1.43448 0.88890 1.42605 1.04014 1.01489 1.89580 1.21141 0.89756 0.89183 0.94217 0.92159 1.24009 0.96416 0.98839 1.02400 1.21771 0.99154 0.83087 0.94158 0.89123 1.45982 1.12035 1.16510 1.61170 1.20701 0.84269 0.87748 0.77188 1.90646 1.25493 1.69157 1.57418 1.20956 0.97819 0.94421 0.99559 1.21290 0.97684 0.97147 0.98492 1.20824 0.97872 0.96231 0.96942 1.19685 0.94179 0.98919 0.94786 1.21168 0.99782 0.99982 0.92389 1.21121 0.93891 1.00234 0.99119 1.21111 0.95926 1.00888 0.96489 1.21118 0.99271 1.00351 0.92778 1.19671 0.93254 0.98819 0.95883 1.20849 1.01485 0.96898 0.92690 1.21051 0.95362 0.94335 1.02234 1.23748 0.98200 1.02221 0.96259 0.92900 0.80602 0.90387 0.89746 0.75379 0.88848 0.90998 0.90492 0.90352 0.90270 0.85945 0.86343 0.86396 0.86121 0.90525 0.90684 0.90383 0.91167 0.89127 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.97 55.49 0.78 -26.99 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 3 Si 0.87 20.32 27.74 -169.99 -4.71 15.61 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 7 C -0.25 -6.50 10.47 -15.06 -0.16 -6.65 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.73 -16.02 4.22 -52.64 -0.22 -16.24 16 10 C 0.17 3.03 4.53 -67.12 -0.30 2.73 16 11 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.18 -2.80 7.61 -25.92 -0.20 -3.00 16 13 C 0.12 1.95 4.28 -67.12 -0.29 1.66 16 14 H 0.09 1.42 7.55 -51.93 -0.39 1.03 16 15 N -0.70 -11.30 4.73 -53.02 -0.25 -11.55 16 16 C 0.51 8.13 7.14 -10.99 -0.08 8.05 16 17 O -0.55 -10.06 15.34 5.56 0.09 -9.97 16 18 C -0.11 -1.38 2.02 -93.20 -0.19 -1.57 16 19 C -0.11 -1.35 4.86 -27.41 -0.13 -1.48 16 20 C -0.08 -0.93 5.46 -27.48 -0.15 -1.08 16 21 C -0.08 -0.86 4.98 -104.63 -0.52 -1.38 16 22 C -0.12 -1.22 9.69 -39.51 -0.38 -1.60 16 23 C -0.13 -1.22 10.05 -39.56 -0.40 -1.62 16 24 C -0.13 -1.20 10.05 -39.55 -0.40 -1.59 16 25 C -0.12 -1.17 9.69 -39.50 -0.38 -1.56 16 26 C -0.08 -0.83 4.98 -104.63 -0.52 -1.36 16 27 C -0.08 -0.83 5.46 -27.47 -0.15 -0.98 16 28 C -0.09 -1.10 4.32 -27.40 -0.12 -1.22 16 29 C -0.16 -2.57 7.58 -25.92 -0.20 -2.76 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.36 7.76 4.85 -40.82 -0.20 7.56 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.41 6.85 6.11 -40.82 -0.25 6.60 16 35 H 0.09 1.17 7.82 -51.93 -0.41 0.76 16 36 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.08 1.02 6.86 -51.93 -0.36 0.66 16 38 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 39 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 40 H 0.12 1.13 7.97 -52.49 -0.42 0.71 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.99 7.98 -52.48 -0.42 0.57 16 44 H 0.08 0.75 6.90 -51.93 -0.36 0.39 16 45 H 0.07 0.65 7.93 -51.93 -0.41 0.24 16 46 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 47 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -30.61 380.74 -10.99 -41.61 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -7.74 Total: 17.05 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.66 Total: -15.25 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.30 Total: -54.78 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.71 Total: 15.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.61 -10.99 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022339275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.758 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds