Wall clock time and date at job start Tue Mar 31 2020 16:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00029 * 2 1 4 4 H 1.48501 * 109.47239 * 270.00504 * 3 2 1 5 5 H 1.48507 * 109.46811 * 30.00016 * 3 2 1 6 6 H 1.48497 * 109.47427 * 149.99929 * 3 2 1 7 7 C 1.38809 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00148 * 180.02562 * 9 7 2 11 11 H 1.08993 * 112.90904 * 28.03754 * 10 9 7 12 12 C 1.53780 * 113.61378 * 159.28669 * 10 9 7 13 13 C 1.53780 * 87.08334 * 89.11648 * 12 10 9 14 14 H 1.08995 * 113.61265 * 140.06895 * 13 12 10 15 15 N 1.46497 * 113.61543 * 270.88382 * 13 12 10 16 16 C 1.34777 * 120.00044 * 278.66207 * 15 13 12 17 17 O 1.21283 * 120.00054 * 0.27393 * 16 15 13 18 18 C 1.50698 * 120.00077 * 180.27467 * 16 15 13 19 19 C 1.52998 * 109.47129 * 173.75881 * 18 16 15 20 20 H 1.08999 * 109.25628 * 55.07949 * 19 18 16 21 21 C 1.52737 * 109.25521 * 295.64734 * 19 18 16 22 22 C 1.53317 * 108.39290 * 188.62117 * 21 19 18 23 23 C 1.52730 * 108.38655 * 69.86458 * 22 21 19 24 24 C 1.50625 * 110.58913 * 308.88663 * 23 22 21 25 25 C 1.38908 * 117.75659 * 197.44722 * 24 23 22 26 26 C 1.37933 * 120.55049 * 180.56894 * 25 24 23 27 27 C 1.38271 * 119.76589 * 359.97438 * 26 25 24 28 28 C 1.37929 * 119.77513 * 359.88868 * 27 26 25 29 29 C 1.37674 * 122.56305 * 17.79558 * 24 23 22 30 30 C 1.53782 * 113.61529 * 256.78364 * 10 9 7 31 31 H 0.96993 * 120.00392 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00085 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61551 * 334.56659 * 12 10 9 34 34 H 1.09003 * 113.69140 * 203.67594 * 12 10 9 35 35 H 0.96996 * 120.00151 * 98.93081 * 15 13 12 36 36 H 1.09004 * 109.47044 * 293.75561 * 18 16 15 37 37 H 1.08997 * 109.47251 * 53.75403 * 18 16 15 38 38 H 1.08996 * 109.67627 * 308.34335 * 21 19 18 39 39 H 1.09003 * 109.67376 * 68.88822 * 21 19 18 40 40 H 1.09009 * 109.68523 * 310.13628 * 22 21 19 41 41 H 1.09005 * 109.70993 * 189.60924 * 22 21 19 42 42 H 1.09005 * 109.25622 * 188.59889 * 23 22 21 43 43 H 1.08996 * 109.25236 * 69.17122 * 23 22 21 44 44 H 1.08002 * 119.72260 * 0.58713 * 25 24 23 45 45 H 1.07996 * 120.11654 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.10700 * 179.90064 * 27 26 25 47 47 H 1.07997 * 119.72802 * 180.02562 * 28 27 26 48 48 H 1.08998 * 113.61457 * 156.33748 * 30 10 9 49 49 H 1.08997 * 113.61756 * 25.42908 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0377 -3.5811 0.4714 12 6 1.2248 -4.8492 0.4978 13 6 0.7784 -5.0458 -0.9605 14 1 0.7233 -6.0914 -1.2631 15 7 -0.4244 -4.2875 -1.3133 16 6 -1.6421 -4.7669 -0.9907 17 8 -1.7418 -5.8236 -0.4040 18 6 -2.8796 -3.9898 -1.3591 19 6 -4.1210 -4.8183 -1.0224 20 1 -4.0855 -5.1086 0.0277 21 6 -4.1391 -6.0745 -1.8910 22 6 -5.4882 -6.7769 -1.6977 23 6 -6.5741 -5.9215 -2.3469 24 6 -6.4828 -4.4963 -1.8681 25 6 -7.5895 -3.6782 -2.0567 26 6 -7.5644 -2.3602 -1.6509 27 6 -6.4289 -1.8483 -1.0506 28 6 -5.3299 -2.6596 -0.8597 29 6 -5.3537 -3.9876 -1.2665 30 6 2.0872 -4.3513 -1.3723 31 1 -0.4850 0.8399 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 0.4137 -4.5653 1.1683 34 1 1.8257 -5.6721 0.8852 35 1 -0.3447 -3.4423 -1.7825 36 1 -2.9028 -3.0559 -0.7976 37 1 -2.8671 -3.7715 -2.4269 38 1 -4.0158 -5.7984 -2.9382 39 1 -3.3314 -6.7411 -1.5890 40 1 -5.6954 -6.8875 -0.6332 41 1 -5.4625 -7.7587 -2.1704 42 1 -7.5528 -6.3256 -2.0881 43 1 -6.4511 -5.9454 -3.4297 44 1 -8.4770 -4.0776 -2.5249 45 1 -8.4287 -1.7303 -1.8014 46 1 -6.4027 -0.8166 -0.7321 47 1 -4.4435 -2.2591 -0.3904 48 1 2.9251 -5.0374 -1.4966 49 1 1.9723 -3.6655 -2.2115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023002530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:59 Heat of formation + Delta-G solvation = -11.830602 kcal Electronic energy + Delta-G solvation = -28232.001220 eV Core-core repulsion = 24544.061008 eV Total energy + Delta-G solvation = -3687.940212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58820 -40.79067 -39.26612 -36.96244 -35.46957 -34.59326 -33.98748 -31.81494 -31.08599 -30.66215 -28.15772 -26.59720 -26.19315 -24.63249 -23.87566 -23.59138 -22.53732 -21.06250 -20.25896 -20.14534 -19.26172 -18.18779 -17.20481 -17.07071 -16.60384 -16.56669 -16.36730 -16.17753 -15.84061 -15.48285 -15.04558 -14.89974 -14.77917 -14.44674 -14.27471 -13.95095 -13.66239 -13.46880 -13.29338 -13.25780 -13.13695 -13.02754 -12.76907 -12.57885 -12.46660 -12.22106 -12.17087 -12.15301 -11.87868 -11.78772 -11.70058 -11.28714 -11.13286 -11.07301 -10.89630 -10.65729 -9.85077 -9.63026 -9.42503 -8.99231 -7.93944 -5.21878 0.47921 0.49958 1.49119 1.49703 1.57699 1.69633 2.29206 2.56709 2.87112 3.38497 3.59163 3.68793 3.72463 3.82112 3.84871 3.95650 4.00567 4.08082 4.19644 4.27908 4.28940 4.29454 4.38758 4.41063 4.49985 4.55478 4.63236 4.71664 4.79918 4.85584 4.90489 4.95751 5.00603 5.02022 5.06230 5.09903 5.16541 5.18495 5.25172 5.25472 5.37977 5.41685 5.45429 5.53740 5.65072 5.69034 5.76958 5.80523 6.17007 6.29333 6.62170 7.31212 7.35811 8.10905 8.35846 9.28743 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.003479 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.719308 B = 8045.636267 C =10156.589723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.146 3.854 11 H 0.062 0.938 12 C -0.157 4.157 13 C 0.130 3.870 14 H 0.089 0.911 15 N -0.704 5.704 16 C 0.517 3.483 17 O -0.571 6.571 18 C -0.132 4.132 19 C -0.022 4.022 20 H 0.067 0.933 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.076 4.076 24 C -0.084 4.084 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.137 4.137 29 C -0.083 4.083 30 C -0.157 4.157 31 H 0.251 0.749 32 H 0.377 0.623 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.406 0.594 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.129 0.871 47 H 0.113 0.887 48 H 0.117 0.883 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 -11.614 -7.220 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.035 3.965 11 H 0.080 0.920 12 C -0.197 4.197 13 C 0.024 3.976 14 H 0.107 0.893 15 N -0.355 5.355 16 C 0.305 3.695 17 O -0.451 6.451 18 C -0.171 4.171 19 C -0.041 4.041 20 H 0.086 0.914 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.113 4.113 24 C -0.084 4.084 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.155 4.155 29 C -0.083 4.083 30 C -0.197 4.197 31 H 0.060 0.940 32 H 0.210 0.790 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.242 0.758 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.147 0.853 47 H 0.131 0.869 48 H 0.135 0.865 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.525 -12.215 -6.788 18.766 hybrid contribution 0.335 1.863 0.230 1.907 sum -12.191 -10.352 -6.558 17.285 Atomic orbital electron populations 1.69778 1.06297 1.25959 1.59246 1.25436 0.96325 1.00601 1.03638 0.85218 0.77663 0.79949 0.77351 1.21370 1.22597 1.19854 1.19634 0.91530 0.85064 1.41306 0.90635 1.42371 1.05539 1.00312 1.87619 1.21458 0.94935 0.85003 0.95069 0.91985 1.23767 0.99800 0.99497 0.96593 1.21747 0.84709 0.95310 0.95788 0.89276 1.45904 1.05192 1.25161 1.59198 1.20877 0.85220 0.85532 0.77915 1.90605 1.87397 1.24435 1.42700 1.21821 0.91521 0.99483 1.04317 1.19633 0.89757 0.94294 1.00383 0.91445 1.21621 0.98600 0.95802 0.98985 1.21516 0.93792 0.98999 1.00933 1.20520 1.00121 0.89849 1.00809 1.19909 0.93043 0.97186 0.98272 1.21447 0.98516 0.93909 1.00501 1.21376 0.98415 0.96075 0.98456 1.21310 0.93693 1.00293 0.99931 1.21401 0.99155 0.94153 1.00772 1.19630 0.95227 0.93988 0.99449 1.23956 0.96254 0.99787 0.99744 0.94049 0.78955 0.94347 0.87015 0.75817 0.88889 0.87820 0.91674 0.91584 0.92552 0.89870 0.89120 0.89572 0.83709 0.83864 0.85293 0.86914 0.86527 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.93 13.06 21.65 0.28 -55.65 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 3 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -12.97 9.98 84.03 0.84 -12.13 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -34.54 5.04 -320.45 -1.61 -36.16 16 10 C 0.15 5.52 4.55 45.52 0.21 5.73 16 11 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 12 C -0.16 -5.35 7.60 31.12 0.24 -5.12 16 13 C 0.13 4.11 3.96 45.52 0.18 4.29 16 14 H 0.09 2.64 8.12 -2.39 -0.02 2.62 16 15 N -0.70 -23.64 4.23 -440.04 -1.86 -25.50 16 16 C 0.52 17.54 7.48 87.66 0.66 18.19 16 17 O -0.57 -21.77 14.15 -3.04 -0.04 -21.81 16 18 C -0.13 -3.89 4.82 29.85 0.14 -3.74 16 19 C -0.02 -0.61 1.91 -11.65 -0.02 -0.63 16 20 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 21 C -0.11 -2.76 4.86 30.61 0.15 -2.61 16 22 C -0.11 -2.24 5.98 30.61 0.18 -2.06 16 23 C -0.08 -1.30 5.67 29.73 0.17 -1.13 16 24 C -0.08 -1.86 5.74 -19.86 -0.11 -1.97 16 25 C -0.13 -2.42 9.61 22.36 0.21 -2.21 16 26 C -0.13 -2.51 10.05 22.21 0.22 -2.29 16 27 C -0.13 -3.23 10.05 22.20 0.22 -3.00 16 28 C -0.14 -3.77 9.03 22.36 0.20 -3.57 16 29 C -0.08 -2.18 5.43 -19.86 -0.11 -2.28 16 30 C -0.16 -4.80 7.58 31.12 0.24 -4.57 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.38 19.24 6.52 -92.71 -0.60 18.64 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.41 14.18 8.07 -92.71 -0.75 13.43 16 36 H 0.09 2.97 6.15 -2.38 -0.01 2.95 16 37 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 38 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.07 1.88 6.34 -2.39 -0.02 1.86 16 40 H 0.06 1.20 8.10 -2.38 -0.02 1.18 16 41 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 1.21 8.13 -2.38 -0.02 1.19 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.15 1.93 8.05 -2.91 -0.02 1.91 16 45 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 46 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 47 H 0.11 3.34 6.25 -2.91 -0.02 3.32 16 48 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.06 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -64.31 386.14 2.48 -61.83 By element: Atomic # 1 Polarization: 53.19 SS G_CDS: -0.40 Total: 52.79 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.08 Total: -22.32 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -3.19 Total: -117.30 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.04 Total: -21.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.31 2.48 -61.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023002530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.003 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds