Wall clock time and date at job start Tue Mar 31 2020 16:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00370 * 2 1 4 4 H 1.48503 * 109.46899 * 269.99895 * 3 2 1 5 5 H 1.48499 * 109.46853 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.46959 * 149.99678 * 3 2 1 7 7 C 1.38814 * 119.99443 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00300 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00249 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84840 * 313.48248 * 10 9 7 12 12 C 1.53785 * 113.61406 * 84.67138 * 10 9 7 13 13 C 1.53787 * 87.07802 * 89.12044 * 12 10 9 14 14 H 1.08995 * 113.61546 * 140.06246 * 13 12 10 15 15 N 1.46501 * 113.61117 * 270.88585 * 13 12 10 16 16 C 1.34785 * 119.99785 * 199.46203 * 15 13 12 17 17 O 1.21283 * 119.99897 * 359.72893 * 16 15 13 18 18 C 1.50699 * 119.99979 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.46712 * 186.05958 * 18 16 15 20 20 H 1.08995 * 109.24914 * 305.61408 * 19 18 16 21 21 C 1.52728 * 109.25279 * 65.04991 * 19 18 16 22 22 C 1.53330 * 108.39045 * 171.37829 * 21 19 18 23 23 C 1.52730 * 108.38212 * 290.13403 * 22 21 19 24 24 C 1.50631 * 110.59012 * 51.11037 * 23 22 21 25 25 C 1.38918 * 117.75296 * 162.54985 * 24 23 22 26 26 C 1.37923 * 120.54564 * 179.43550 * 25 24 23 27 27 C 1.38275 * 119.77109 * 0.02562 * 26 25 24 28 28 C 1.37928 * 119.76990 * 0.11941 * 27 26 25 29 29 C 1.37665 * 122.56211 * 342.20470 * 24 23 22 30 30 C 1.53774 * 113.61644 * 182.17333 * 10 9 7 31 31 H 0.97001 * 119.99839 * 0.02562 * 1 2 3 32 32 H 0.97006 * 119.99974 * 0.02562 * 9 7 2 33 33 H 1.08999 * 113.61295 * 334.57602 * 12 10 9 34 34 H 1.08991 * 113.61613 * 203.66678 * 12 10 9 35 35 H 0.96994 * 120.00401 * 19.46653 * 15 13 12 36 36 H 1.09000 * 109.46731 * 306.05737 * 18 16 15 37 37 H 1.08997 * 109.46738 * 66.05896 * 18 16 15 38 38 H 1.09002 * 109.67947 * 291.10439 * 21 19 18 39 39 H 1.08996 * 109.68457 * 51.65541 * 21 19 18 40 40 H 1.09003 * 109.68111 * 170.41325 * 22 21 19 41 41 H 1.09000 * 109.71408 * 49.87314 * 22 21 19 42 42 H 1.09003 * 109.25605 * 290.82570 * 23 22 21 43 43 H 1.09001 * 109.22404 * 171.38267 * 23 22 21 44 44 H 1.08001 * 119.72552 * 359.41845 * 25 24 23 45 45 H 1.08001 * 120.11685 * 180.02562 * 26 25 24 46 46 H 1.07992 * 120.10919 * 180.09980 * 27 26 25 47 47 H 1.07997 * 119.72514 * 179.97438 * 28 27 26 48 48 H 1.09008 * 113.61479 * 156.34031 * 30 10 9 49 49 H 1.09000 * 113.61730 * 25.43242 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.8680 -3.6779 -0.7283 12 6 2.4791 -4.1250 1.4035 13 6 1.1233 -4.8464 1.4840 14 1 1.1785 -5.8284 1.9537 15 7 0.0475 -4.0146 2.0291 16 6 -1.0663 -4.5915 2.5223 17 8 -1.1800 -5.7990 2.5105 18 6 -2.1727 -3.7360 3.0836 19 6 -3.2432 -4.6325 3.7090 20 1 -3.5758 -5.3631 2.9716 21 6 -2.6481 -5.3650 4.9097 22 6 -3.7827 -6.0850 5.6481 23 6 -4.6649 -5.0335 6.3180 24 6 -5.0722 -3.9746 5.3271 25 6 -6.1514 -3.1634 5.6543 26 6 -6.5661 -2.1679 4.7944 27 6 -5.9030 -1.9753 3.5963 28 6 -4.8332 -2.7816 3.2684 29 6 -4.4147 -3.7856 4.1325 30 6 1.1464 -4.8943 -0.0529 31 1 -0.4850 0.8401 -0.0004 32 1 0.3553 -2.3880 -0.0002 33 1 2.5843 -3.3119 2.1218 34 1 3.3339 -4.8012 1.3998 35 1 0.1367 -3.0488 2.0349 36 1 -1.7664 -3.0700 3.8448 37 1 -2.6164 -3.1446 2.2827 38 1 -1.9124 -6.0931 4.5678 39 1 -2.1721 -4.6478 5.5783 40 1 -3.3649 -6.7495 6.4045 41 1 -4.3748 -6.6629 4.9385 42 1 -4.1127 -4.5682 7.1345 43 1 -5.5577 -5.5152 6.7166 44 1 -6.6702 -3.3137 6.5895 45 1 -7.4057 -1.5409 5.0559 46 1 -6.2221 -1.1964 2.9197 47 1 -4.3161 -2.6309 2.3323 48 1 1.6370 -5.7809 -0.4547 49 1 0.1758 -4.7023 -0.5104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023002531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:03 Heat of formation + Delta-G solvation = 2.040164 kcal Electronic energy + Delta-G solvation = -28144.737657 eV Core-core repulsion = 24457.398927 eV Total energy + Delta-G solvation = -3687.338730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48060 -39.56596 -37.96457 -36.02917 -33.66805 -33.57889 -32.49285 -30.21544 -30.03664 -29.60841 -27.12014 -25.21573 -24.43166 -23.41154 -22.76241 -22.57283 -21.42834 -19.81309 -19.32585 -18.66056 -17.39151 -16.94058 -16.23797 -15.65762 -15.56421 -15.23692 -15.10370 -14.78644 -14.50898 -14.13627 -13.85451 -13.68439 -13.37756 -13.34503 -13.15152 -12.89295 -12.70015 -12.31277 -12.23125 -11.98441 -11.77176 -11.53986 -11.41182 -11.35696 -11.16454 -10.94706 -10.89120 -10.82492 -10.40107 -10.28613 -10.23906 -10.19028 -9.80436 -9.57101 -9.40565 -8.96121 -8.73950 -8.53414 -8.48137 -7.07948 -5.89124 -3.18498 1.36976 1.38054 3.01022 3.36972 3.43232 3.44092 3.58426 3.77321 4.49565 4.58283 4.63468 4.81399 4.88659 4.96385 5.09392 5.13013 5.18614 5.21095 5.23520 5.32983 5.41140 5.44505 5.45409 5.51426 5.53231 5.63066 5.73865 5.75265 5.83399 5.89170 5.92028 5.97183 6.04217 6.07271 6.13493 6.15275 6.29769 6.34359 6.37001 6.40919 6.52053 6.58052 6.61119 6.66636 6.69655 6.86930 7.02703 7.14472 7.63943 8.04954 8.30349 8.66746 9.41477 9.96954 10.32228 11.33077 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.003403 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.525506 B = 8225.039934 C =10102.260315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.051 0.949 12 C -0.179 4.179 13 C 0.128 3.872 14 H 0.086 0.914 15 N -0.700 5.700 16 C 0.516 3.484 17 O -0.555 6.555 18 C -0.139 4.139 19 C -0.029 4.029 20 H 0.091 0.909 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.080 4.080 24 C -0.076 4.076 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.117 4.117 29 C -0.067 4.067 30 C -0.163 4.163 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.127 0.873 48 H 0.085 0.915 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -9.248 11.005 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.352 5.352 10 C 0.051 3.949 11 H 0.068 0.932 12 C -0.220 4.220 13 C 0.023 3.977 14 H 0.104 0.896 15 N -0.353 5.353 16 C 0.302 3.698 17 O -0.434 6.434 18 C -0.178 4.178 19 C -0.048 4.048 20 H 0.109 0.891 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.117 4.117 24 C -0.076 4.076 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.135 4.135 29 C -0.067 4.067 30 C -0.202 4.202 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.104 0.896 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.393 -9.921 10.991 17.534 hybrid contribution 0.145 1.678 -0.108 1.688 sum -9.247 -8.243 10.883 16.489 Atomic orbital electron populations 1.69639 1.05059 1.25885 1.57417 1.24730 0.95532 0.97684 1.02657 0.86187 0.78696 0.83702 0.77573 1.21697 1.21759 1.20726 1.19231 0.91204 0.83794 1.43071 0.90989 1.42247 1.05588 0.99442 1.87876 1.21201 0.93931 0.86041 0.93735 0.93167 1.24038 0.94969 1.00243 1.02746 1.21668 0.87637 0.94433 0.94006 0.89592 1.45955 1.17067 1.11564 1.60701 1.20576 0.83133 0.88711 0.77335 1.90616 1.80117 1.14812 1.57836 1.21849 0.95045 0.98740 1.02194 1.19755 0.91406 0.95630 0.97977 0.89081 1.21689 0.98002 0.99871 0.95914 1.21527 0.97074 0.97291 0.99607 1.20486 0.99789 0.94774 0.96659 1.19600 0.95748 0.97383 0.94893 1.21101 0.97273 0.96291 0.99629 1.21038 1.00122 0.98354 0.94818 1.21099 0.96195 0.99584 0.97074 1.21341 0.97007 0.95319 0.99838 1.19632 0.96754 0.96480 0.93873 1.23696 1.01061 0.99122 0.96360 0.93373 0.78053 0.90709 0.90218 0.74642 0.88946 0.88076 0.89662 0.92186 0.91631 0.91659 0.90820 0.91153 0.86524 0.86398 0.86083 0.85564 0.89645 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.12 13.06 55.49 0.72 -25.39 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.24 -6.29 9.99 -15.06 -0.15 -6.44 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -16.47 4.38 -52.64 -0.23 -16.70 16 10 C 0.16 3.08 4.53 -67.12 -0.30 2.77 16 11 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 12 C -0.18 -2.97 7.61 -25.91 -0.20 -3.17 16 13 C 0.13 2.13 4.24 -67.11 -0.28 1.84 16 14 H 0.09 1.41 7.61 -51.93 -0.39 1.01 16 15 N -0.70 -11.90 4.92 -53.01 -0.26 -12.16 16 16 C 0.52 8.45 7.49 -10.98 -0.08 8.37 16 17 O -0.55 -10.16 13.88 5.55 0.08 -10.08 16 18 C -0.14 -1.93 4.83 -27.88 -0.13 -2.06 16 19 C -0.03 -0.38 1.91 -91.94 -0.18 -0.56 16 20 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 21 C -0.12 -1.44 4.87 -26.70 -0.13 -1.57 16 22 C -0.12 -1.21 5.98 -26.70 -0.16 -1.37 16 23 C -0.08 -0.78 5.67 -28.06 -0.16 -0.94 16 24 C -0.08 -0.89 5.74 -104.61 -0.60 -1.49 16 25 C -0.12 -1.34 9.61 -39.45 -0.38 -1.72 16 26 C -0.13 -1.34 10.05 -39.68 -0.40 -1.74 16 27 C -0.12 -1.41 10.05 -39.68 -0.40 -1.81 16 28 C -0.12 -1.48 9.03 -39.45 -0.36 -1.84 16 29 C -0.07 -0.85 5.43 -104.61 -0.57 -1.42 16 30 C -0.16 -2.72 7.57 -25.92 -0.20 -2.92 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.38 9.41 7.10 -40.82 -0.29 9.12 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.42 7.64 7.31 -40.82 -0.30 7.34 16 36 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 37 H 0.10 1.40 6.12 -51.93 -0.32 1.08 16 38 H 0.08 1.19 6.40 -51.93 -0.33 0.86 16 39 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 44 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.13 1.56 6.24 -52.49 -0.33 1.24 16 48 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 49 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -28.83 385.52 -11.50 -40.33 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -7.82 Total: 18.24 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -4.77 Total: -16.41 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.23 Total: -54.26 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.83 -11.50 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023002531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.367 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds