Wall clock time and date at job start Tue Mar 31 2020 16:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00215 * 2 1 4 4 H 1.48497 * 109.47030 * 270.00018 * 3 2 1 5 5 H 1.48495 * 109.47091 * 29.99790 * 3 2 1 6 6 H 1.48499 * 109.46893 * 150.00200 * 3 2 1 7 7 C 1.38819 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99432 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99611 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85099 * 336.19474 * 10 9 7 12 12 C 1.53786 * 113.69214 * 107.46599 * 10 9 7 13 13 C 1.53781 * 87.07984 * 139.99263 * 12 10 9 14 14 H 1.08999 * 113.69374 * 89.13000 * 13 12 10 15 15 N 1.46502 * 113.61107 * 220.01940 * 13 12 10 16 16 C 1.34773 * 120.00154 * 252.49735 * 15 13 12 17 17 O 1.21280 * 120.00035 * 359.97438 * 16 15 13 18 18 C 1.50701 * 120.00108 * 180.02562 * 16 15 13 19 19 C 1.53000 * 109.46909 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.71628 * 54.45875 * 19 18 16 21 21 C 1.53333 * 109.68234 * 174.99900 * 19 18 16 22 22 C 1.52730 * 108.42194 * 189.63976 * 21 19 18 23 23 C 1.50636 * 110.59810 * 308.96060 * 22 21 19 24 24 C 1.38909 * 117.75091 * 197.48979 * 23 22 21 25 25 C 1.37933 * 120.54639 * 180.17133 * 24 23 22 26 26 C 1.38266 * 119.77189 * 0.04167 * 25 24 23 27 27 C 1.37933 * 119.77022 * 359.89846 * 26 25 24 28 28 C 1.37661 * 122.56537 * 17.51065 * 23 22 21 29 29 C 1.50635 * 122.57352 * 359.58050 * 28 23 22 30 30 C 1.53785 * 87.08451 * 334.56772 * 13 12 10 31 31 H 0.97009 * 119.99653 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00367 * 0.02562 * 9 7 2 33 33 H 1.08996 * 113.61083 * 25.44141 * 12 10 9 34 34 H 1.09003 * 113.61469 * 254.53806 * 12 10 9 35 35 H 0.97001 * 119.99930 * 72.49558 * 15 13 12 36 36 H 1.08993 * 109.47403 * 59.99464 * 18 16 15 37 37 H 1.08998 * 109.46956 * 299.99637 * 18 16 15 38 38 H 1.09002 * 109.68234 * 69.89558 * 21 19 18 39 39 H 1.08999 * 109.67862 * 309.38129 * 21 19 18 40 40 H 1.09001 * 109.25245 * 69.24467 * 22 21 19 41 41 H 1.09001 * 109.25258 * 188.70932 * 22 21 19 42 42 H 1.07998 * 119.72462 * 0.22316 * 24 23 22 43 43 H 1.08001 * 120.11571 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.11427 * 179.87155 * 26 25 24 45 45 H 1.07995 * 119.72699 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.25303 * 137.92563 * 29 28 23 47 47 H 1.09001 * 109.25456 * 257.35652 * 29 28 23 48 48 H 1.08992 * 113.61517 * 139.98241 * 30 13 12 49 49 H 1.08999 * 113.61030 * 270.88963 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 1 3.5278 -3.2969 0.4058 12 6 4.7864 -2.7951 -1.3435 13 6 5.9837 -3.3114 -0.5282 14 1 5.9127 -4.3671 -0.2662 15 7 7.2830 -2.9541 -1.1031 16 6 8.0398 -3.8982 -1.6966 17 8 7.6456 -5.0437 -1.7544 18 6 9.3766 -3.5308 -2.2875 19 6 10.0253 -4.7762 -2.8951 20 1 9.3410 -5.2368 -3.6077 21 6 11.3263 -4.3860 -3.6066 22 6 11.8221 -5.5921 -4.4016 23 6 11.8737 -6.8180 -3.5278 24 6 12.6354 -7.8936 -3.9666 25 6 12.7202 -9.0461 -3.2137 26 6 12.0411 -9.1329 -2.0124 27 6 11.2852 -8.0656 -1.5743 28 6 11.2007 -6.9029 -2.3298 29 6 10.3639 -5.7737 -1.7879 30 6 5.5262 -2.3659 0.5950 31 1 -0.4850 0.8402 0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 5.0136 -1.9130 -1.9420 34 1 4.2767 -3.5735 -1.9114 35 1 7.5985 -2.0381 -1.0566 36 1 10.0214 -3.1294 -1.5059 37 1 9.2362 -2.7792 -3.0643 38 1 12.0760 -4.0989 -2.8693 39 1 11.1387 -3.5522 -4.2832 40 1 11.1460 -5.7745 -5.2370 41 1 12.8204 -5.3833 -4.7862 42 1 13.1662 -7.8264 -4.9047 43 1 13.3147 -9.8780 -3.5613 44 1 12.1019 -10.0335 -1.4194 45 1 10.7548 -8.1343 -0.6361 46 1 9.4403 -6.1777 -1.3733 47 1 10.9171 -5.2621 -1.0004 48 1 5.6136 -2.7977 1.5919 49 1 5.9556 -1.3664 0.5263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023022301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:36 Heat of formation + Delta-G solvation = -0.583380 kcal Electronic energy + Delta-G solvation = -26844.581356 eV Core-core repulsion = 23157.128861 eV Total energy + Delta-G solvation = -3687.452496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58350 -39.76192 -38.23697 -36.50763 -34.20182 -33.00328 -32.76004 -31.63353 -30.47710 -29.45106 -27.43834 -25.25437 -24.60746 -23.79649 -22.56049 -22.35315 -21.48127 -20.38021 -19.59115 -19.44428 -17.53515 -17.00954 -16.59735 -16.32289 -16.06397 -15.39475 -15.06213 -14.78923 -14.71631 -14.48184 -14.10459 -13.91983 -13.54835 -13.53174 -13.16889 -13.13477 -12.73075 -12.57945 -12.34222 -12.17510 -12.07410 -11.92277 -11.79265 -11.68581 -11.47700 -11.08255 -11.01386 -10.82389 -10.78694 -10.54190 -10.45987 -10.31413 -10.17071 -9.68075 -9.56108 -8.97747 -8.95874 -8.82285 -8.72199 -7.31437 -5.81563 -3.17674 1.14966 1.16872 2.64428 3.22125 3.32413 3.34777 3.41218 3.53162 4.28379 4.35300 4.51483 4.53894 4.67955 4.72489 4.78977 4.82650 4.90575 4.93990 5.07464 5.10864 5.17639 5.19252 5.22283 5.27961 5.38484 5.39538 5.41042 5.48594 5.58347 5.60385 5.65425 5.72080 5.74073 5.82039 5.85368 6.00295 6.07943 6.09240 6.15071 6.16991 6.28102 6.30695 6.37656 6.49245 6.51632 6.63612 6.81600 6.92619 7.56969 7.94701 8.26683 8.37888 9.15136 9.87408 10.06807 11.36547 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.001895 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.507986 B =14774.521458 C =15258.967983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.174 3.826 11 H 0.088 0.912 12 C -0.176 4.176 13 C 0.118 3.882 14 H 0.111 0.889 15 N -0.717 5.717 16 C 0.510 3.490 17 O -0.540 6.540 18 C -0.139 4.139 19 C -0.070 4.070 20 H 0.083 0.917 21 C -0.116 4.116 22 C -0.079 4.079 23 C -0.080 4.080 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.066 4.066 29 C -0.082 4.082 30 C -0.162 4.162 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.032 -11.918 -6.314 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.062 3.938 11 H 0.106 0.894 12 C -0.218 4.218 13 C 0.014 3.986 14 H 0.129 0.871 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.418 6.418 18 C -0.179 4.179 19 C -0.088 4.088 20 H 0.102 0.898 21 C -0.153 4.153 22 C -0.116 4.116 23 C -0.080 4.080 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.066 4.066 29 C -0.119 4.119 30 C -0.202 4.202 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 29.450 -12.787 -6.329 32.724 hybrid contribution 0.729 1.662 -0.017 1.815 sum 30.179 -11.126 -6.346 32.784 Atomic orbital electron populations 1.69705 1.05115 1.25878 1.57180 1.24706 0.95269 0.97260 1.01878 0.86540 0.79171 0.84992 0.77739 1.21082 1.21674 1.20376 1.19149 0.80609 0.94858 1.43302 0.89027 1.42696 1.04102 1.01796 1.88806 1.21336 0.89307 0.90298 0.92813 0.89432 1.24288 0.96345 1.00873 1.00294 1.22455 0.81092 0.99901 0.95191 0.87119 1.46097 1.20174 1.11822 1.58636 1.20682 0.86232 0.85531 0.77925 1.90671 1.73264 1.19815 1.58023 1.21781 0.94380 0.99881 1.01817 1.20900 0.96242 0.94112 0.97586 0.89848 1.21633 0.97003 0.97357 0.99329 1.20455 1.01754 0.92086 0.97346 1.19633 0.97425 0.95863 0.95092 1.21134 0.99618 0.93458 0.99830 1.21031 1.00241 0.97889 0.95373 1.21063 0.97761 0.98602 0.96713 1.21208 0.99401 0.93190 0.99993 1.19691 0.97124 0.95627 0.94151 1.20691 0.99670 0.94051 0.97494 1.23885 0.99272 0.99122 0.97918 0.92998 0.80503 0.90375 0.91832 0.76787 0.88937 0.88725 0.91529 0.91195 0.90564 0.90819 0.86411 0.86339 0.86261 0.86183 0.88623 0.91198 0.91216 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.97 55.49 0.78 -28.22 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.63 27.74 -169.99 -4.71 16.92 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.92 10.45 -15.06 -0.16 -7.08 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.73 -16.81 5.21 -52.63 -0.27 -17.09 16 10 C 0.17 3.20 4.48 -67.11 -0.30 2.90 16 11 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 12 C -0.18 -2.88 7.68 -25.92 -0.20 -3.08 16 13 C 0.12 1.63 4.24 -67.11 -0.28 1.34 16 14 H 0.11 1.63 7.46 -51.93 -0.39 1.24 16 15 N -0.72 -8.06 5.35 -53.01 -0.28 -8.34 16 16 C 0.51 5.96 7.59 -10.99 -0.08 5.87 16 17 O -0.54 -8.32 13.68 5.56 0.08 -8.24 16 18 C -0.14 -1.09 5.17 -27.88 -0.14 -1.23 16 19 C -0.07 -0.61 1.84 -90.54 -0.17 -0.77 16 20 H 0.08 0.90 7.90 -51.93 -0.41 0.49 16 21 C -0.12 -0.78 5.28 -26.70 -0.14 -0.92 16 22 C -0.08 -0.57 5.67 -28.05 -0.16 -0.73 16 23 C -0.08 -0.74 5.74 -104.61 -0.60 -1.34 16 24 C -0.12 -1.04 9.61 -39.44 -0.38 -1.42 16 25 C -0.13 -1.06 10.05 -39.68 -0.40 -1.46 16 26 C -0.12 -1.08 10.05 -39.68 -0.40 -1.48 16 27 C -0.12 -1.17 9.61 -39.44 -0.38 -1.55 16 28 C -0.07 -0.67 5.74 -104.61 -0.60 -1.27 16 29 C -0.08 -0.80 4.64 -28.01 -0.13 -0.93 16 30 C -0.16 -2.32 7.58 -25.91 -0.20 -2.51 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.36 8.06 5.79 -40.82 -0.24 7.82 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 3.49 8.73 -40.82 -0.36 3.13 16 36 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.12 0.77 8.05 -52.49 -0.42 0.34 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 46 H 0.10 1.14 6.23 -51.93 -0.32 0.82 16 47 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -33.18 389.74 -11.42 -44.59 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -8.06 Total: 10.12 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -4.81 Total: -15.62 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.22 Total: -53.64 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.18 -11.42 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023022301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.011 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds