Wall clock time and date at job start Tue Mar 31 2020 16:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99726 * 2 1 4 4 H 1.48504 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47247 * 299.99934 * 3 2 1 6 6 H 1.48498 * 109.47016 * 60.00053 * 3 2 1 7 7 C 1.38817 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99353 * 179.97438 * 9 7 2 11 11 H 1.08991 * 112.85127 * 336.19065 * 10 9 7 12 12 C 1.53950 * 113.66512 * 107.44055 * 10 9 7 13 13 C 1.53782 * 87.02058 * 139.92689 * 12 10 9 14 14 H 1.08998 * 113.61367 * 89.22919 * 13 12 10 15 15 N 1.46502 * 113.61426 * 220.04254 * 13 12 10 16 16 C 1.34773 * 120.00429 * 254.13594 * 15 13 12 17 17 O 1.21288 * 119.99689 * 0.02562 * 16 15 13 18 18 C 1.50700 * 120.00157 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46892 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.68074 * 304.48920 * 19 18 16 21 21 C 1.53324 * 109.67843 * 183.93929 * 19 18 16 22 22 C 1.52733 * 108.38932 * 170.43471 * 21 19 18 23 23 C 1.50630 * 110.64324 * 50.94775 * 22 21 19 24 24 C 1.38912 * 117.75651 * 162.18610 * 23 22 21 25 25 C 1.37936 * 120.54395 * 179.56361 * 24 23 22 26 26 C 1.38264 * 119.76978 * 0.29383 * 25 24 23 27 27 C 1.37941 * 119.77356 * 0.14228 * 26 25 24 28 28 C 1.37662 * 122.56106 * 342.52459 * 23 22 21 29 29 C 1.50633 * 122.56484 * 0.39956 * 28 23 22 30 30 C 1.53781 * 87.17234 * 334.63702 * 13 12 10 31 31 H 0.97001 * 120.00474 * 0.02562 * 1 2 3 32 32 H 0.96991 * 120.00503 * 359.97438 * 9 7 2 33 33 H 1.09003 * 113.61873 * 25.40601 * 12 10 9 34 34 H 1.09001 * 113.66828 * 254.45617 * 12 10 9 35 35 H 0.97001 * 119.99940 * 74.14190 * 15 13 12 36 36 H 1.08999 * 109.47213 * 60.00349 * 18 16 15 37 37 H 1.08996 * 109.46605 * 299.99887 * 18 16 15 38 38 H 1.09010 * 109.67575 * 290.15534 * 21 19 18 39 39 H 1.08995 * 109.67918 * 50.70512 * 21 19 18 40 40 H 1.09000 * 109.25371 * 171.41868 * 22 21 19 41 41 H 1.09001 * 109.25334 * 290.89133 * 22 21 19 42 42 H 1.08002 * 119.73195 * 359.84652 * 24 23 22 43 43 H 1.07996 * 120.11480 * 180.27672 * 25 24 23 44 44 H 1.07994 * 120.11418 * 180.11734 * 26 25 24 45 45 H 1.08000 * 119.73058 * 179.91819 * 27 26 25 46 46 H 1.09000 * 109.25162 * 102.66787 * 29 28 23 47 47 H 1.09000 * 109.25503 * 222.09569 * 29 28 23 48 48 H 1.08998 * 113.61396 * 139.93758 * 30 13 12 49 49 H 1.08994 * 113.61064 * 270.75533 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0657 -3.5637 -0.4049 12 6 2.0013 -4.4032 1.3458 13 6 1.8482 -5.6975 0.5296 14 1 2.7980 -6.1645 0.2693 15 7 0.8878 -6.6432 1.1037 16 6 1.3267 -7.7554 1.7257 17 8 2.5169 -7.9731 1.8104 18 6 0.3388 -8.7284 2.3157 19 6 1.0930 -9.8941 2.9585 20 1 1.7550 -10.3526 2.2240 21 6 0.0922 -10.9352 3.4736 22 6 0.8669 -12.1843 3.8886 23 6 2.0011 -11.8234 4.8119 24 6 2.5631 -12.8396 5.5743 25 6 3.6104 -12.5751 6.4320 26 6 4.1017 -11.2871 6.5390 27 6 3.5391 -10.2749 5.7894 28 6 2.4838 -10.5392 4.9256 29 6 1.9125 -9.3859 4.1430 30 6 1.2603 -4.8287 -0.5949 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 1.1240 -4.1581 1.9444 34 1 2.9302 -4.3526 1.9139 35 1 -0.0640 -6.4689 1.0362 36 1 -0.3130 -9.1069 1.5283 37 1 -0.2612 -8.2229 3.0724 38 1 -0.4451 -10.5340 4.3331 39 1 -0.6147 -11.1874 2.6832 40 1 0.1924 -12.8734 4.3968 41 1 1.2721 -12.6678 2.9997 42 1 2.1798 -13.8459 5.4914 43 1 4.0450 -13.3712 7.0182 44 1 4.9228 -11.0741 7.2074 45 1 3.9225 -9.2689 5.8745 46 1 1.2719 -8.7916 4.7946 47 1 2.7273 -8.7624 3.7751 48 1 1.5918 -5.1211 -1.5912 49 1 0.1798 -4.7015 -0.5287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023022302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:39 Heat of formation + Delta-G solvation = -5.123195 kcal Electronic energy + Delta-G solvation = -26852.098113 eV Core-core repulsion = 23164.448757 eV Total energy + Delta-G solvation = -3687.649357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52906 -39.67567 -38.10219 -36.44650 -34.07753 -32.95072 -32.73117 -31.57297 -29.92829 -29.37811 -27.34393 -25.13557 -24.53781 -23.79081 -22.66639 -22.30871 -21.55726 -20.29237 -19.52527 -19.18828 -17.21827 -16.94430 -16.53613 -16.22714 -15.96547 -15.32559 -15.01309 -14.71919 -14.59411 -14.43754 -14.19168 -13.78963 -13.49454 -13.35355 -13.13473 -13.05420 -12.79318 -12.55728 -12.23229 -12.14299 -11.93032 -11.79935 -11.63619 -11.43401 -11.27396 -10.99152 -10.94469 -10.76040 -10.64586 -10.52729 -10.45970 -10.30452 -10.03265 -9.70844 -9.49849 -8.93010 -8.91912 -8.74589 -8.66460 -7.00193 -5.82174 -3.10909 1.19508 1.21740 2.71454 3.30712 3.40896 3.47262 3.49094 3.57919 4.33714 4.40006 4.55324 4.58865 4.72715 4.77391 4.84123 4.89216 4.96249 5.04167 5.13021 5.22237 5.23585 5.27051 5.32320 5.37614 5.43323 5.46497 5.48585 5.52547 5.62931 5.70114 5.76405 5.85168 5.87120 5.89884 5.95439 6.10752 6.16089 6.20169 6.24010 6.30127 6.32460 6.35779 6.51412 6.55776 6.60319 6.75961 6.86571 7.05825 7.66100 7.67799 8.34264 8.36419 9.47850 10.04522 10.39081 11.40270 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.001919 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.357282 B =14588.066046 C =15314.729727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.079 0.921 12 C -0.176 4.176 13 C 0.118 3.882 14 H 0.107 0.893 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.543 6.543 18 C -0.139 4.139 19 C -0.068 4.068 20 H 0.082 0.918 21 C -0.116 4.116 22 C -0.079 4.079 23 C -0.081 4.081 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.065 4.065 29 C -0.084 4.084 30 C -0.159 4.159 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.065 0.935 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -27.435 9.214 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.013 3.987 14 H 0.125 0.875 15 N -0.366 5.366 16 C 0.296 3.704 17 O -0.420 6.420 18 C -0.179 4.179 19 C -0.087 4.087 20 H 0.100 0.900 21 C -0.153 4.153 22 C -0.116 4.116 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.065 4.065 29 C -0.121 4.121 30 C -0.198 4.198 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.233 0.767 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.084 0.916 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.791 -27.400 9.249 28.930 hybrid contribution -0.346 1.027 0.135 1.092 sum 0.445 -26.373 9.384 27.996 Atomic orbital electron populations 1.69662 1.05149 1.25666 1.57615 1.24770 0.95549 0.97833 1.02796 0.86105 0.78859 0.83979 0.77182 1.20469 1.21831 1.21846 1.19366 0.91194 0.84145 1.42752 0.90923 1.42359 1.05677 0.99787 1.86988 1.21386 0.95450 0.84927 0.92663 0.90281 1.24345 1.01740 0.95279 1.00445 1.22463 0.93269 0.87521 0.95452 0.87480 1.46111 1.10327 1.22633 1.57510 1.20675 0.89878 0.81861 0.77984 1.90659 1.17266 1.75801 1.58318 1.21784 0.98310 0.96237 1.01570 1.20871 0.96399 0.94199 0.97258 0.89997 1.21634 0.97487 0.95097 1.01120 1.20447 0.94914 0.98011 0.98197 1.19629 0.97715 0.92816 0.97950 1.21125 0.97202 0.98657 0.97097 1.21023 0.97351 0.96815 0.99409 1.21066 1.00092 0.93209 0.99757 1.21229 0.96398 0.99475 0.96665 1.19705 0.95794 0.94197 0.96786 1.20708 1.00733 0.95497 0.95169 1.23849 1.01156 0.97393 0.97448 0.93505 0.78113 0.90286 0.92331 0.76706 0.88800 0.88851 0.91471 0.91220 0.90830 0.90674 0.86451 0.86372 0.86268 0.86123 0.91113 0.88427 0.91576 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.38 5.40 -52.55 -0.28 -17.67 16 10 C 0.17 3.25 4.48 -67.02 -0.30 2.95 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.18 -3.04 7.69 -25.83 -0.20 -3.24 16 13 C 0.12 1.72 4.21 -67.12 -0.28 1.44 16 14 H 0.11 1.66 7.50 -51.93 -0.39 1.27 16 15 N -0.72 -8.66 5.36 -53.01 -0.28 -8.94 16 16 C 0.51 6.29 7.58 -10.99 -0.08 6.21 16 17 O -0.54 -8.65 13.63 5.55 0.08 -8.58 16 18 C -0.14 -1.17 5.18 -27.88 -0.14 -1.32 16 19 C -0.07 -0.63 1.85 -90.59 -0.17 -0.79 16 20 H 0.08 0.89 7.94 -51.93 -0.41 0.47 16 21 C -0.12 -0.82 5.29 -26.70 -0.14 -0.96 16 22 C -0.08 -0.59 5.67 -28.05 -0.16 -0.75 16 23 C -0.08 -0.78 5.74 -104.62 -0.60 -1.38 16 24 C -0.12 -1.09 9.61 -39.44 -0.38 -1.47 16 25 C -0.13 -1.12 10.05 -39.68 -0.40 -1.52 16 26 C -0.12 -1.16 10.05 -39.68 -0.40 -1.56 16 27 C -0.12 -1.26 9.61 -39.44 -0.38 -1.64 16 28 C -0.06 -0.70 5.74 -104.62 -0.60 -1.30 16 29 C -0.08 -0.90 4.62 -28.05 -0.13 -1.03 16 30 C -0.16 -2.45 7.58 -25.92 -0.20 -2.64 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.38 9.91 7.92 -40.82 -0.32 9.59 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.90 8.71 -40.82 -0.36 3.55 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.07 0.47 8.10 -51.92 -0.42 0.05 16 39 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.12 0.80 8.05 -52.49 -0.42 0.37 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 46 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 47 H 0.10 1.27 6.14 -51.93 -0.32 0.95 16 48 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -32.13 392.78 -11.78 -43.91 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -8.10 Total: 11.52 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -4.80 Total: -16.31 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.16 Total: -53.64 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.13 -11.78 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023022302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.782 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds