Wall clock time and date at job start Tue Mar 31 2020 16:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48499 * 109.47080 * 239.99613 * 3 2 1 5 5 H 1.48498 * 109.47654 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47002 * 120.00196 * 3 2 1 7 7 C 1.38810 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.84505 * 336.20293 * 10 9 7 12 12 C 1.53950 * 113.74251 * 107.40452 * 10 9 7 13 13 C 1.53779 * 87.01990 * 139.94470 * 12 10 9 14 14 H 1.08997 * 113.61535 * 89.22738 * 13 12 10 15 15 N 1.46503 * 113.61859 * 220.04850 * 13 12 10 16 16 C 1.34773 * 119.99983 * 254.14248 * 15 13 12 17 17 O 1.21284 * 119.99805 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99989 * 180.02562 * 16 15 13 19 19 H 1.09001 * 109.62898 * 299.57743 * 18 16 15 20 20 C 1.53068 * 109.63845 * 178.96178 * 18 16 15 21 21 C 1.51589 * 110.94439 * 154.70871 * 20 18 16 22 22 C 1.51595 * 114.42875 * 68.13733 * 21 20 18 23 23 C 1.53060 * 110.93354 * 291.87704 * 22 21 20 24 24 C 1.51454 * 108.46102 * 85.58422 * 23 22 21 25 25 C 1.38397 * 119.51657 * 109.56160 * 24 23 22 26 26 C 1.38287 * 119.61794 * 180.12441 * 25 24 23 27 27 C 1.38255 * 120.05693 * 359.59895 * 26 25 24 28 28 C 1.38293 * 120.05935 * 0.19701 * 27 26 25 29 29 C 1.37045 * 120.16036 * 289.27631 * 24 23 22 30 30 C 1.53774 * 113.61483 * 205.00466 * 10 9 7 31 31 H 0.97003 * 119.99913 * 359.97438 * 1 2 3 32 32 H 0.97005 * 120.00313 * 0.02562 * 9 7 2 33 33 H 1.08996 * 113.61222 * 25.42815 * 12 10 9 34 34 H 1.09001 * 113.67169 * 254.47441 * 12 10 9 35 35 H 0.97001 * 119.99823 * 74.13701 * 15 13 12 36 36 H 1.09004 * 109.18356 * 275.08917 * 20 18 16 37 37 H 1.09004 * 109.18567 * 34.38201 * 20 18 16 38 38 H 1.08997 * 108.49407 * 189.41321 * 21 20 18 39 39 H 1.08997 * 108.49730 * 307.01941 * 21 20 18 40 40 H 1.08998 * 109.18758 * 52.24814 * 22 21 20 41 41 H 1.09000 * 109.18931 * 171.54801 * 22 21 20 42 42 H 1.08996 * 109.65194 * 325.87972 * 23 22 21 43 43 H 1.09000 * 109.62050 * 205.26432 * 23 22 21 44 44 H 1.07999 * 120.18704 * 359.63308 * 25 24 23 45 45 H 1.08000 * 119.97204 * 179.80331 * 26 25 24 46 46 H 1.08010 * 119.97228 * 180.22558 * 27 26 25 47 47 H 1.08005 * 120.19253 * 179.97438 * 28 27 26 48 48 H 1.09000 * 113.61647 * 105.38962 * 30 10 9 49 49 H 1.09000 * 113.61641 * 334.48206 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0654 -3.5636 -0.4077 12 6 2.0040 -4.4049 1.3427 13 6 1.8501 -5.6983 0.5252 14 1 2.7997 -6.1645 0.2626 15 7 0.8912 -6.6453 1.0998 16 6 1.3319 -7.7579 1.7196 17 8 2.5222 -7.9755 1.8013 18 6 0.3455 -8.7323 2.3101 19 1 -0.2501 -8.2327 3.0742 20 6 1.0969 -9.9139 2.9284 21 6 0.2756 -10.5650 4.0237 22 6 -0.9678 -11.2806 3.5336 23 6 -1.9970 -10.2830 2.9967 24 6 -1.6738 -9.9949 1.5453 25 6 -2.5102 -10.4743 0.5524 26 6 -2.2157 -10.2146 -0.7736 27 6 -1.0959 -9.4731 -1.1019 28 6 -0.2662 -8.9932 -0.1050 29 6 -0.5639 -9.2598 1.2199 30 6 1.2598 -4.8284 -0.5971 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.1276 -4.1611 1.9431 34 1 2.9338 -4.3545 1.9093 35 1 -0.0608 -6.4714 1.0341 36 1 1.3072 -10.6501 2.1526 37 1 2.0375 -9.5592 3.3499 38 1 0.9053 -11.2849 4.5464 39 1 -0.0284 -9.7947 4.7323 40 1 -0.6924 -11.9738 2.7388 41 1 -1.4084 -11.8393 4.3593 42 1 -1.9478 -9.3594 3.5733 43 1 -2.9962 -10.7122 3.0712 44 1 -3.3835 -11.0545 0.8112 45 1 -2.8627 -10.5886 -1.5533 46 1 -0.8692 -9.2681 -2.1378 47 1 0.6093 -8.4141 -0.3591 48 1 1.5897 -5.1195 -1.5944 49 1 0.1795 -4.7006 -0.5281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023137655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:38 Heat of formation + Delta-G solvation = 3.544151 kcal Electronic energy + Delta-G solvation = -27965.036151 eV Core-core repulsion = 24277.762639 eV Total energy + Delta-G solvation = -3687.273513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00655 -39.36249 -37.96418 -36.56424 -34.13981 -33.47574 -32.49914 -31.56297 -29.89292 -29.83665 -26.53922 -25.13056 -24.84708 -24.11000 -22.95620 -22.08308 -20.87699 -20.53615 -20.00864 -19.11689 -17.39224 -17.15875 -16.83335 -16.22223 -15.67381 -15.14539 -14.98544 -14.74039 -14.56221 -14.39212 -14.25750 -13.75529 -13.69642 -13.43327 -13.11555 -13.01798 -12.84404 -12.56557 -12.33111 -12.05008 -11.93811 -11.91607 -11.40705 -11.27299 -11.10095 -10.93728 -10.90054 -10.89080 -10.71040 -10.61579 -10.51018 -10.31713 -10.07707 -9.72703 -9.54320 -9.01492 -8.90775 -8.79931 -8.70060 -6.99234 -5.80687 -3.09581 1.14655 1.18173 2.64652 3.27133 3.42754 3.47285 3.48211 3.54325 4.28787 4.45667 4.50897 4.57465 4.63195 4.66641 4.82934 4.84994 4.93673 5.02210 5.07017 5.14522 5.19188 5.24282 5.33984 5.36693 5.46159 5.46855 5.47793 5.54051 5.70737 5.77733 5.82967 5.85909 5.86507 5.91736 5.94844 6.04365 6.10971 6.13816 6.25185 6.28781 6.31003 6.34516 6.42410 6.52523 6.61207 6.75070 6.79730 7.06398 7.63680 7.67691 8.29470 8.37831 9.49076 10.05801 10.40403 11.41648 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.002509 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.456453 B =11155.183538 C =11713.332773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.079 0.921 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.108 0.892 15 N -0.712 5.712 16 C 0.520 3.480 17 O -0.541 6.541 18 C -0.068 4.068 19 H 0.106 0.894 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.073 4.073 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.114 4.114 29 C -0.073 4.073 30 C -0.158 4.158 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.128 0.872 48 H 0.066 0.934 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -25.762 3.945 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.362 5.362 16 C 0.306 3.694 17 O -0.419 6.419 18 C -0.089 4.089 19 H 0.124 0.876 20 C -0.136 4.136 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.120 4.120 24 C -0.073 4.073 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.074 4.074 30 C -0.198 4.198 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.146 0.854 48 H 0.085 0.915 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.709 -25.717 3.989 26.447 hybrid contribution -0.455 1.065 -0.092 1.161 sum -5.164 -24.652 3.897 25.487 Atomic orbital electron populations 1.69649 1.05150 1.25894 1.57438 1.24763 0.95534 0.97803 1.02747 0.86254 0.78539 0.83401 0.77915 1.21184 1.21680 1.21205 1.19269 0.91115 0.84166 1.43034 0.91051 1.42347 1.05678 0.99757 1.86991 1.21375 0.95431 0.84933 0.92633 0.90290 1.24350 1.01784 0.95220 1.00489 1.22497 0.93227 0.87508 0.95576 0.87415 1.46166 1.10489 1.22316 1.57244 1.20362 0.89418 0.81776 0.77876 1.90682 1.16961 1.75921 1.58296 1.20562 0.95324 0.96004 0.97026 0.87603 1.21148 0.98770 0.95517 0.98210 1.21078 0.96525 0.99974 0.98115 1.21282 0.95310 0.97865 1.00728 1.20855 0.99205 1.00036 0.91915 1.19558 0.94395 0.97596 0.95768 1.21087 0.99408 1.00532 0.92531 1.21170 0.97416 0.98841 0.96328 1.21161 0.95058 0.98076 0.99394 1.21377 0.99956 0.99753 0.92132 1.19255 0.95322 0.99206 0.93593 1.23848 1.01205 0.97331 0.97393 0.93397 0.78092 0.90260 0.92275 0.76492 0.91511 0.89706 0.91774 0.92057 0.91769 0.91572 0.90532 0.90915 0.86012 0.86167 0.86012 0.85417 0.91527 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.51 5.41 -52.55 -0.28 -17.80 16 10 C 0.17 3.29 4.48 -67.03 -0.30 2.99 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.18 -3.09 7.70 -25.83 -0.20 -3.29 16 13 C 0.12 1.74 4.21 -67.12 -0.28 1.45 16 14 H 0.11 1.68 7.50 -51.93 -0.39 1.29 16 15 N -0.71 -9.19 4.06 -53.02 -0.22 -9.41 16 16 C 0.52 7.00 5.72 -10.99 -0.06 6.93 16 17 O -0.54 -9.16 15.10 5.55 0.08 -9.08 16 18 C -0.07 -0.71 2.23 -92.52 -0.21 -0.92 16 19 H 0.11 0.99 6.92 -51.93 -0.36 0.63 16 20 C -0.10 -0.99 4.80 -27.41 -0.13 -1.12 16 21 C -0.12 -0.91 5.23 -28.16 -0.15 -1.05 16 22 C -0.11 -0.78 5.65 -27.41 -0.15 -0.93 16 23 C -0.08 -0.59 5.46 -27.48 -0.15 -0.74 16 24 C -0.07 -0.66 4.99 -104.63 -0.52 -1.18 16 25 C -0.12 -1.00 9.69 -39.50 -0.38 -1.38 16 26 C -0.12 -1.04 10.05 -39.56 -0.40 -1.44 16 27 C -0.12 -1.16 10.05 -39.56 -0.40 -1.55 16 28 C -0.11 -1.24 8.64 -39.51 -0.34 -1.58 16 29 C -0.07 -0.75 4.82 -104.63 -0.50 -1.25 16 30 C -0.16 -2.47 7.58 -25.92 -0.20 -2.67 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.39 10.01 7.92 -40.82 -0.32 9.69 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 4.60 8.41 -40.82 -0.34 4.26 16 36 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 37 H 0.08 0.98 7.09 -51.93 -0.37 0.61 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 40 H 0.06 0.49 7.85 -51.93 -0.41 0.08 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.53 6.90 -51.93 -0.36 0.18 16 43 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 44 H 0.12 0.79 7.97 -52.49 -0.42 0.37 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 1.51 5.96 -52.48 -0.31 1.20 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -31.47 384.53 -11.39 -42.87 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.85 Total: 12.62 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.62 Total: -15.07 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.22 Total: -54.39 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.47 -11.39 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023137655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds