Wall clock time and date at job start Tue Mar 31 2020 16:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47066 * 299.99922 * 3 2 1 6 6 H 1.48501 * 109.47539 * 59.99819 * 3 2 1 7 7 C 1.38812 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99873 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85267 * 336.20025 * 10 9 7 12 12 C 1.53951 * 113.66646 * 107.43977 * 10 9 7 13 13 C 1.53781 * 87.02199 * 139.93172 * 12 10 9 14 14 H 1.09000 * 113.61301 * 89.23260 * 13 12 10 15 15 N 1.46502 * 113.61582 * 220.05178 * 13 12 10 16 16 C 1.34779 * 119.99768 * 254.13398 * 15 13 12 17 17 O 1.21279 * 120.00018 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99693 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.63901 * 93.49844 * 18 16 15 20 20 C 1.53071 * 109.63711 * 214.11439 * 18 16 15 21 21 C 1.51588 * 110.94569 * 34.09652 * 20 18 16 22 22 C 1.51594 * 114.43307 * 68.14131 * 21 20 18 23 23 C 1.53107 * 110.92383 * 291.87244 * 22 21 20 24 24 C 1.51463 * 108.44364 * 85.58610 * 23 22 21 25 25 C 1.38390 * 119.51060 * 109.33179 * 24 23 22 26 26 C 1.38297 * 119.61710 * 179.90459 * 25 24 23 27 27 C 1.38253 * 120.05916 * 359.97438 * 26 25 24 28 28 C 1.38298 * 120.05578 * 0.32502 * 27 26 25 29 29 C 1.37045 * 120.16762 * 289.26620 * 24 23 22 30 30 C 1.53777 * 113.61651 * 205.00134 * 10 9 7 31 31 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99540 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.61531 * 25.41629 * 12 10 9 34 34 H 1.09002 * 113.67254 * 254.46037 * 12 10 9 35 35 H 0.96996 * 120.00313 * 74.13847 * 15 13 12 36 36 H 1.09004 * 109.18101 * 154.46995 * 20 18 16 37 37 H 1.08999 * 109.18866 * 273.71191 * 20 18 16 38 38 H 1.09002 * 108.49251 * 189.42004 * 21 20 18 39 39 H 1.08998 * 108.49066 * 306.85788 * 21 20 18 40 40 H 1.09000 * 109.18601 * 52.25399 * 22 21 20 41 41 H 1.09006 * 109.18609 * 171.55700 * 22 21 20 42 42 H 1.09000 * 109.64323 * 325.90553 * 23 22 21 43 43 H 1.08997 * 109.65286 * 205.27740 * 23 22 21 44 44 H 1.07999 * 120.19375 * 359.87318 * 25 24 23 45 45 H 1.08000 * 119.96843 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.97142 * 180.02562 * 27 26 25 47 47 H 1.07996 * 120.19271 * 179.68923 * 28 27 26 48 48 H 1.09003 * 113.61611 * 105.47183 * 30 10 9 49 49 H 1.09002 * 113.61135 * 334.56544 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 2.0011 -4.4032 1.3458 13 6 1.8480 -5.6976 0.5296 14 1 2.7979 -6.1646 0.2694 15 7 0.8875 -6.6432 1.1036 16 6 1.3264 -7.7554 1.7256 17 8 2.5164 -7.9732 1.8105 18 6 0.3383 -8.7284 2.3155 19 1 0.1157 -9.5101 1.5892 20 6 0.9251 -9.3515 3.5846 21 6 1.7924 -8.3542 4.3269 22 6 1.0313 -7.1950 4.9394 23 6 0.4588 -6.2815 3.8523 24 6 -0.8792 -6.8393 3.4133 25 6 -2.0416 -6.1691 3.7523 26 6 -3.2643 -6.6754 3.3510 27 6 -3.3220 -7.8443 2.6150 28 6 -2.1573 -8.5129 2.2845 29 6 -0.9365 -7.9986 2.6847 30 6 1.2603 -4.8288 -0.5949 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.1237 -4.1582 1.9443 34 1 2.9299 -4.3527 1.9140 35 1 -0.0643 -6.4689 1.0360 36 1 0.1114 -9.6724 4.2352 37 1 1.5279 -10.2179 3.3126 38 1 2.3204 -8.8799 5.1225 39 1 2.5311 -7.9543 3.6323 40 1 0.2146 -7.5841 5.5474 41 1 1.7058 -6.6182 5.5723 42 1 1.1401 -6.2521 3.0020 43 1 0.3234 -5.2765 4.2518 44 1 -1.9941 -5.2562 4.3274 45 1 -4.1750 -6.1568 3.6121 46 1 -4.2776 -8.2382 2.3020 47 1 -2.2000 -9.4289 1.7140 48 1 1.5919 -5.1212 -1.5913 49 1 0.1799 -4.7002 -0.5280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023137656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:41 Heat of formation + Delta-G solvation = 23.463610 kcal Electronic energy + Delta-G solvation = -29170.961805 eV Core-core repulsion = 25484.552065 eV Total energy + Delta-G solvation = -3686.409740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48769 -39.13249 -38.08381 -35.89895 -34.20882 -33.38704 -32.81362 -31.21294 -29.87031 -29.75242 -26.40519 -25.17474 -24.56997 -24.09803 -22.64343 -22.44892 -21.05808 -20.37958 -19.91404 -18.98898 -17.31726 -17.11049 -16.50412 -16.17431 -16.11497 -15.03027 -14.74410 -14.65827 -14.57289 -14.36535 -14.04934 -13.81985 -13.39193 -13.26403 -13.05008 -12.91057 -12.80111 -12.62122 -12.31623 -11.99049 -11.92726 -11.73087 -11.29283 -11.25511 -11.00003 -10.94641 -10.76543 -10.63907 -10.52890 -10.47231 -10.39352 -10.23722 -9.99880 -9.66917 -9.50170 -8.92228 -8.90889 -8.66277 -8.60223 -6.98631 -5.80842 -3.09516 1.20068 1.27019 2.64195 3.30707 3.41432 3.47880 3.49616 3.63015 4.35637 4.53530 4.58330 4.71098 4.77524 4.84297 4.92084 5.00292 5.01397 5.10325 5.18303 5.24345 5.26454 5.31427 5.38214 5.46783 5.54784 5.61925 5.66863 5.75473 5.83454 5.86147 5.91168 5.94016 6.03614 6.08797 6.12098 6.15825 6.24691 6.26345 6.30683 6.31931 6.40098 6.47167 6.56887 6.59434 6.61265 6.77758 6.87549 7.06855 7.64371 7.68836 8.29538 8.37595 9.49159 10.06068 10.40576 11.41559 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.003412 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.573701 B = 8204.676570 C = 8942.634730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.709 5.709 10 C 0.169 3.831 11 H 0.079 0.921 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.109 0.891 15 N -0.712 5.712 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.067 4.067 19 H 0.108 0.892 20 C -0.088 4.088 21 C -0.153 4.153 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.061 4.061 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.110 4.110 29 C -0.092 4.092 30 C -0.158 4.158 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.066 0.934 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 -20.538 7.192 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.127 0.873 15 N -0.363 5.363 16 C 0.316 3.684 17 O -0.417 6.417 18 C -0.088 4.088 19 H 0.125 0.875 20 C -0.126 4.126 21 C -0.190 4.190 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.061 4.061 25 C -0.131 4.131 26 C -0.133 4.133 27 C -0.145 4.145 28 C -0.128 4.128 29 C -0.092 4.092 30 C -0.198 4.198 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.085 0.915 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.708 -20.507 7.223 22.056 hybrid contribution -0.670 1.025 0.086 1.227 sum -4.378 -19.483 7.309 21.264 Atomic orbital electron populations 1.69670 1.05140 1.25617 1.57612 1.24750 0.95507 0.97756 1.02790 0.86127 0.78878 0.84077 0.77181 1.20476 1.21849 1.21862 1.19362 0.91168 0.84151 1.42752 0.90956 1.42355 1.05676 0.99748 1.86947 1.21373 0.95409 0.84931 0.92629 0.90290 1.24372 1.01796 0.95153 1.00516 1.22517 0.93268 0.87587 0.95656 0.87350 1.46356 1.10717 1.22283 1.56900 1.20160 0.89275 0.81600 0.77346 1.90601 1.16910 1.75998 1.58240 1.20609 0.92059 0.97048 0.99115 0.87453 1.21023 0.99285 0.98236 0.94079 1.21527 0.99980 0.96452 1.01020 1.21207 0.99495 0.96492 0.97379 1.21539 0.94144 0.98844 1.00915 1.19698 0.95710 0.94287 0.96445 1.21212 0.91830 0.99864 1.00222 1.21205 0.97838 0.96186 0.98047 1.21105 0.98118 0.95942 0.99294 1.21072 0.91734 0.99838 1.00186 1.19395 0.93956 0.95878 0.99997 1.23847 1.01179 0.97385 0.97423 0.93531 0.78103 0.90069 0.92247 0.76269 0.91459 0.91074 0.92496 0.88156 0.92504 0.91749 0.87518 0.90842 0.85738 0.86085 0.86158 0.85954 0.91543 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.32 5.40 -52.55 -0.28 -17.60 16 10 C 0.17 3.26 4.48 -67.03 -0.30 2.96 16 11 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -3.01 6.85 -25.83 -0.18 -3.18 16 13 C 0.11 1.69 4.14 -67.12 -0.28 1.41 16 14 H 0.11 1.65 7.50 -51.93 -0.39 1.26 16 15 N -0.71 -9.29 3.54 -53.02 -0.19 -9.47 16 16 C 0.53 6.96 4.21 -10.99 -0.05 6.92 16 17 O -0.54 -8.62 13.62 5.56 0.08 -8.55 16 18 C -0.07 -0.70 2.97 -92.52 -0.28 -0.98 16 19 H 0.11 0.94 7.92 -51.92 -0.41 0.53 16 20 C -0.09 -0.90 5.23 -27.41 -0.14 -1.04 16 21 C -0.15 -1.75 5.09 -28.16 -0.14 -1.90 16 22 C -0.11 -1.22 5.65 -27.39 -0.15 -1.38 16 23 C -0.12 -1.45 5.30 -27.45 -0.15 -1.59 16 24 C -0.06 -0.70 4.03 -104.62 -0.42 -1.12 16 25 C -0.11 -1.26 9.69 -39.50 -0.38 -1.64 16 26 C -0.11 -1.14 10.05 -39.55 -0.40 -1.54 16 27 C -0.13 -1.16 10.05 -39.55 -0.40 -1.55 16 28 C -0.11 -1.01 9.69 -39.50 -0.38 -1.40 16 29 C -0.09 -0.96 3.57 -104.63 -0.37 -1.33 16 30 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 31 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.38 9.96 7.92 -40.82 -0.32 9.64 16 33 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.40 5.00 6.92 -40.82 -0.28 4.71 16 36 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.41 4.66 -51.93 -0.24 1.17 16 40 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.46 2.64 -51.93 -0.14 1.32 16 43 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 44 H 0.12 1.32 7.97 -52.49 -0.42 0.90 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.87 7.97 -52.49 -0.42 0.45 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -30.43 374.90 -11.12 -41.55 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -7.61 Total: 15.57 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -4.46 Total: -17.29 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.25 Total: -54.07 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.43 -11.12 -41.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023137656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.011 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds