Wall clock time and date at job start Tue Mar 31 2020 16:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47066 * 299.99922 * 3 2 1 6 6 H 1.48501 * 109.47539 * 59.99819 * 3 2 1 7 7 C 1.38812 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99873 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85267 * 336.20025 * 10 9 7 12 12 C 1.53951 * 113.66646 * 107.43977 * 10 9 7 13 13 C 1.53781 * 87.02199 * 139.93172 * 12 10 9 14 14 H 1.09000 * 113.61301 * 89.23260 * 13 12 10 15 15 N 1.46502 * 113.61582 * 220.05178 * 13 12 10 16 16 C 1.34779 * 119.99768 * 254.13398 * 15 13 12 17 17 O 1.21279 * 120.00018 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99693 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.63901 * 93.49844 * 18 16 15 20 20 C 1.53071 * 109.63711 * 214.11439 * 18 16 15 21 21 C 1.51588 * 110.94569 * 34.09652 * 20 18 16 22 22 C 1.51594 * 114.43307 * 68.14131 * 21 20 18 23 23 C 1.53107 * 110.92383 * 291.87244 * 22 21 20 24 24 C 1.51463 * 108.44364 * 85.58610 * 23 22 21 25 25 C 1.38390 * 119.51060 * 109.33179 * 24 23 22 26 26 C 1.38297 * 119.61710 * 179.90459 * 25 24 23 27 27 C 1.38253 * 120.05916 * 359.97438 * 26 25 24 28 28 C 1.38298 * 120.05578 * 0.32502 * 27 26 25 29 29 C 1.37045 * 120.16762 * 289.26620 * 24 23 22 30 30 C 1.53777 * 113.61651 * 205.00134 * 10 9 7 31 31 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99540 * 359.97438 * 9 7 2 33 33 H 1.09001 * 113.61531 * 25.41629 * 12 10 9 34 34 H 1.09002 * 113.67254 * 254.46037 * 12 10 9 35 35 H 0.96996 * 120.00313 * 74.13847 * 15 13 12 36 36 H 1.09004 * 109.18101 * 154.46995 * 20 18 16 37 37 H 1.08999 * 109.18866 * 273.71191 * 20 18 16 38 38 H 1.09002 * 108.49251 * 189.42004 * 21 20 18 39 39 H 1.08998 * 108.49066 * 306.85788 * 21 20 18 40 40 H 1.09000 * 109.18601 * 52.25399 * 22 21 20 41 41 H 1.09006 * 109.18609 * 171.55700 * 22 21 20 42 42 H 1.09000 * 109.64323 * 325.90553 * 23 22 21 43 43 H 1.08997 * 109.65286 * 205.27740 * 23 22 21 44 44 H 1.07999 * 120.19375 * 359.87318 * 25 24 23 45 45 H 1.08000 * 119.96843 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.97142 * 180.02562 * 27 26 25 47 47 H 1.07996 * 120.19271 * 179.68923 * 28 27 26 48 48 H 1.09003 * 113.61611 * 105.47183 * 30 10 9 49 49 H 1.09002 * 113.61135 * 334.56544 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 -0.4048 12 6 2.0011 -4.4032 1.3458 13 6 1.8480 -5.6976 0.5296 14 1 2.7979 -6.1646 0.2694 15 7 0.8875 -6.6432 1.1036 16 6 1.3264 -7.7554 1.7256 17 8 2.5164 -7.9732 1.8105 18 6 0.3383 -8.7284 2.3155 19 1 0.1157 -9.5101 1.5892 20 6 0.9251 -9.3515 3.5846 21 6 1.7924 -8.3542 4.3269 22 6 1.0313 -7.1950 4.9394 23 6 0.4588 -6.2815 3.8523 24 6 -0.8792 -6.8393 3.4133 25 6 -2.0416 -6.1691 3.7523 26 6 -3.2643 -6.6754 3.3510 27 6 -3.3220 -7.8443 2.6150 28 6 -2.1573 -8.5129 2.2845 29 6 -0.9365 -7.9986 2.6847 30 6 1.2603 -4.8288 -0.5949 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 1.1237 -4.1582 1.9443 34 1 2.9299 -4.3527 1.9140 35 1 -0.0643 -6.4689 1.0360 36 1 0.1114 -9.6724 4.2352 37 1 1.5279 -10.2179 3.3126 38 1 2.3204 -8.8799 5.1225 39 1 2.5311 -7.9543 3.6323 40 1 0.2146 -7.5841 5.5474 41 1 1.7058 -6.6182 5.5723 42 1 1.1401 -6.2521 3.0020 43 1 0.3234 -5.2765 4.2518 44 1 -1.9941 -5.2562 4.3274 45 1 -4.1750 -6.1568 3.6121 46 1 -4.2776 -8.2382 2.3020 47 1 -2.2000 -9.4289 1.7140 48 1 1.5919 -5.1212 -1.5913 49 1 0.1799 -4.7002 -0.5280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023137656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:41 Heat of formation + Delta-G solvation = 7.449430 kcal Electronic energy + Delta-G solvation = -29171.656231 eV Core-core repulsion = 25484.552065 eV Total energy + Delta-G solvation = -3687.104167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44546 -40.21853 -39.30245 -36.82179 -35.82164 -34.46443 -34.11670 -32.26178 -31.56151 -30.59718 -27.38795 -26.61002 -26.18720 -25.12896 -23.96948 -23.25839 -22.22065 -21.36871 -20.98358 -20.28765 -19.11968 -18.20852 -17.49859 -17.36158 -17.05224 -16.37096 -16.15135 -15.79381 -15.57718 -15.39716 -15.11415 -15.04353 -14.86216 -14.52574 -14.13510 -14.03992 -13.71372 -13.61478 -13.31720 -13.29923 -13.14617 -13.07012 -12.83459 -12.63225 -12.25107 -12.20721 -12.09861 -12.04186 -11.78199 -11.67080 -11.61156 -11.47279 -11.40102 -11.28183 -10.88321 -10.57254 -9.82324 -9.65825 -9.46893 -8.97931 -7.95197 -5.23058 0.43072 0.50520 1.47471 1.47967 1.57855 1.61109 2.24665 2.57071 2.85346 3.36719 3.54844 3.63874 3.71713 3.84751 3.85170 3.94564 3.97575 3.99587 4.15013 4.20803 4.22456 4.29026 4.31403 4.37542 4.43070 4.54985 4.70738 4.74828 4.81125 4.86725 4.87862 4.89820 4.93280 5.06409 5.09157 5.13368 5.14037 5.15978 5.23012 5.28188 5.34414 5.37886 5.49885 5.56041 5.63534 5.66281 5.71083 5.77377 6.12502 6.27137 6.57220 7.24780 7.33790 8.09386 8.32844 9.28119 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.003412 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.573701 B = 8204.676570 C = 8942.634730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.722 5.722 10 C 0.151 3.849 11 H 0.079 0.921 12 C -0.167 4.167 13 C 0.135 3.865 14 H 0.110 0.890 15 N -0.706 5.706 16 C 0.528 3.472 17 O -0.568 6.568 18 C -0.061 4.061 19 H 0.134 0.866 20 C -0.087 4.087 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.073 4.073 25 C -0.133 4.133 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.105 4.105 29 C -0.096 4.096 30 C -0.141 4.141 31 H 0.251 0.749 32 H 0.374 0.626 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.407 0.593 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.083 0.917 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -22.764 6.852 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.209 4.209 13 C 0.029 3.971 14 H 0.128 0.872 15 N -0.357 5.357 16 C 0.318 3.682 17 O -0.448 6.448 18 C -0.082 4.082 19 H 0.152 0.848 20 C -0.125 4.125 21 C -0.188 4.188 22 C -0.142 4.142 23 C -0.155 4.155 24 C -0.073 4.073 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.123 4.123 29 C -0.096 4.096 30 C -0.180 4.180 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.152 0.848 46 H 0.163 0.837 47 H 0.168 0.832 48 H 0.101 0.899 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.291 -22.782 6.888 24.185 hybrid contribution -0.461 1.656 0.235 1.735 sum -4.752 -21.126 7.123 22.796 Atomic orbital electron populations 1.69811 1.06521 1.25925 1.59603 1.25502 0.96327 1.00899 1.03748 0.85137 0.78314 0.80108 0.76604 1.19132 1.22002 1.22234 1.19733 0.91542 0.85383 1.40886 0.90620 1.42490 1.05308 1.00770 1.87401 1.21699 0.95658 0.84104 0.94517 0.90289 1.24157 1.00980 0.96418 0.99316 1.22155 0.93654 0.87050 0.94200 0.87249 1.46231 1.10563 1.22065 1.56851 1.20665 0.89388 0.81593 0.76550 1.90600 1.18396 1.76654 1.59153 1.20647 0.91149 0.96733 0.99647 0.84834 1.21044 0.99560 0.97910 0.93944 1.21483 0.99755 0.96729 1.00852 1.21179 0.99577 0.96387 0.97099 1.21463 0.94868 0.98502 1.00633 1.19637 0.94965 0.95151 0.97520 1.21292 0.92577 1.00128 1.01127 1.21443 0.97759 0.96733 0.97943 1.21437 0.99339 0.95306 0.98360 1.21385 0.90948 1.00498 0.99482 1.19405 0.94542 0.95545 1.00120 1.23646 1.00640 0.95298 0.98457 0.94057 0.79325 0.91310 0.92806 0.75681 0.90100 0.90194 0.91620 0.90739 0.91801 0.92164 0.88939 0.92340 0.86426 0.84793 0.83695 0.83201 0.89865 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.44 9.97 84.03 0.84 -12.60 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.72 -35.82 5.40 -320.18 -1.73 -37.55 16 10 C 0.15 5.81 4.48 45.57 0.20 6.01 16 11 H 0.08 3.03 8.10 -2.38 -0.02 3.01 16 12 C -0.17 -5.77 6.85 31.18 0.21 -5.56 16 13 C 0.13 3.89 4.14 45.52 0.19 4.08 16 14 H 0.11 3.23 7.50 -2.39 -0.02 3.21 16 15 N -0.71 -17.71 3.54 -440.04 -1.56 -19.27 16 16 C 0.53 13.24 4.21 87.66 0.37 13.61 16 17 O -0.57 -17.75 13.62 -3.03 -0.04 -17.79 16 18 C -0.06 -1.12 2.97 -12.02 -0.04 -1.16 16 19 H 0.13 1.80 7.92 -2.38 -0.02 1.78 16 20 C -0.09 -1.56 5.23 30.16 0.16 -1.40 16 21 C -0.15 -3.34 5.09 29.67 0.15 -3.19 16 22 C -0.10 -2.36 5.65 30.17 0.17 -2.19 16 23 C -0.12 -2.94 5.30 30.13 0.16 -2.78 16 24 C -0.07 -1.61 4.03 -19.87 -0.08 -1.69 16 25 C -0.13 -2.92 9.69 22.32 0.22 -2.70 16 26 C -0.12 -2.20 10.05 22.29 0.22 -1.98 16 27 C -0.13 -1.92 10.05 22.29 0.22 -1.69 16 28 C -0.11 -1.56 9.69 22.32 0.22 -1.35 16 29 C -0.10 -1.77 3.57 -19.87 -0.07 -1.84 16 30 C -0.14 -4.30 7.58 31.12 0.24 -4.07 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.37 19.87 7.92 -92.71 -0.73 19.13 16 33 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.41 9.61 6.92 -92.71 -0.64 8.97 16 36 H 0.08 1.26 7.85 -2.39 -0.02 1.25 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 2.09 4.66 -2.39 -0.01 2.08 16 40 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 41 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.09 2.57 2.64 -2.39 -0.01 2.57 16 43 H 0.06 1.58 7.91 -2.39 -0.02 1.56 16 44 H 0.12 2.61 7.97 -2.91 -0.02 2.59 16 45 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 46 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.15 1.40 7.97 -2.91 -0.02 1.37 16 48 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 Total: -1.00 -65.99 374.90 2.42 -63.57 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.41 Total: 45.55 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.85 Total: -24.16 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -3.00 Total: -115.24 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.04 Total: -17.79 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -65.99 2.42 -63.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023137656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.021 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds