Wall clock time and date at job start Tue Mar 31 2020 16:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99887 * 2 1 4 4 H 1.48503 * 109.47228 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.46959 * 29.99971 * 3 2 1 6 6 H 1.48496 * 109.46914 * 149.99999 * 3 2 1 7 7 C 1.38810 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99924 * 170.12241 * 7 2 1 9 9 N 1.36934 * 120.00104 * 350.12688 * 7 2 1 10 10 C 1.46928 * 120.62669 * 319.68064 * 9 7 2 11 11 C 1.53193 * 108.89425 * 126.34472 * 10 9 7 12 12 C 1.53359 * 109.14996 * 54.57545 * 11 10 9 13 13 C 1.53039 * 109.60619 * 298.71706 * 12 11 10 14 14 C 1.46925 * 120.63601 * 139.70723 * 9 7 2 15 15 H 1.08997 * 109.58754 * 113.65562 * 14 9 7 16 16 C 1.52999 * 109.58278 * 353.36825 * 14 9 7 17 17 N 1.46507 * 109.47034 * 62.96813 * 16 14 9 18 18 C 1.34778 * 119.99979 * 185.21889 * 17 16 14 19 19 O 1.21277 * 119.99879 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.99714 * 179.97438 * 18 17 16 21 21 C 1.54343 * 110.82567 * 292.97630 * 20 18 17 22 22 C 1.51376 * 105.16968 * 215.43133 * 21 20 18 23 23 C 1.38497 * 130.38515 * 197.16649 * 22 21 20 24 24 C 1.38111 * 120.20747 * 180.02562 * 23 22 21 25 25 C 1.38242 * 119.93859 * 0.02562 * 24 23 22 26 26 C 1.38101 * 119.93682 * 359.97438 * 25 24 23 27 27 C 1.38216 * 109.75757 * 17.18547 * 22 21 20 28 28 C 1.51362 * 109.76276 * 359.97438 * 27 22 21 29 29 H 0.96998 * 120.00490 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58857 * 246.20097 * 10 9 7 31 31 H 1.09001 * 109.59101 * 6.48607 * 10 9 7 32 32 H 1.08993 * 109.50089 * 174.65936 * 11 10 9 33 33 H 1.08999 * 109.49475 * 294.75501 * 11 10 9 34 34 H 1.08998 * 109.41941 * 178.67842 * 12 11 10 35 35 H 1.08998 * 109.41509 * 58.75088 * 12 11 10 36 36 H 1.09007 * 109.49545 * 301.41829 * 13 12 11 37 37 H 1.09005 * 109.52536 * 181.34045 * 13 12 11 38 38 H 1.09002 * 109.46931 * 182.96278 * 16 14 9 39 39 H 1.08998 * 109.47648 * 302.97218 * 16 14 9 40 40 H 0.97000 * 119.99473 * 5.22820 * 17 16 14 41 41 H 1.09004 * 110.72771 * 56.59953 * 20 18 17 42 42 H 1.08995 * 110.29997 * 334.34791 * 21 20 18 43 43 H 1.08993 * 110.30354 * 96.50711 * 21 20 18 44 44 H 1.07996 * 119.89654 * 0.03100 * 23 22 21 45 45 H 1.08003 * 120.02660 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.03651 * 180.02562 * 25 24 23 47 47 H 1.08005 * 119.89740 * 180.02562 * 26 25 24 48 48 H 1.08995 * 110.30794 * 223.88998 * 28 27 22 49 49 H 1.09005 * 110.30215 * 101.73265 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0782 -1.2089 -0.1610 9 7 1.3408 -2.3793 0.2023 10 6 0.2677 -2.4676 1.2020 11 6 -0.9927 -3.0205 0.5293 12 6 -0.6555 -4.3511 -0.1544 13 6 0.4081 -4.1206 -1.2303 14 6 1.6823 -3.5784 -0.5752 15 1 2.1059 -4.3343 0.0861 16 6 2.7007 -3.2148 -1.6576 17 7 3.9377 -2.7472 -1.0270 18 6 4.9434 -2.2709 -1.7873 19 8 4.8242 -2.2289 -2.9935 20 6 6.2155 -1.7894 -1.1386 21 6 5.9581 -0.5170 -0.3037 22 6 7.2077 0.3220 -0.4649 23 6 7.6738 1.3905 0.2829 24 6 8.8592 2.0123 -0.0573 25 6 9.5832 1.5677 -1.1478 26 6 9.1200 0.5024 -1.8947 27 6 7.9318 -0.1229 -1.5549 28 6 7.2189 -1.2917 -2.2003 29 1 -0.4851 0.8400 -0.0004 30 1 0.5736 -3.1338 2.0086 31 1 0.0616 -1.4761 1.6054 32 1 -1.7662 -3.1793 1.2806 33 1 -1.3492 -2.3092 -0.2157 34 1 -1.5549 -4.7602 -0.6146 35 1 -0.2755 -5.0535 0.5874 36 1 0.0382 -3.3992 -1.9589 37 1 0.6295 -5.0630 -1.7316 38 1 2.9131 -4.0937 -2.2665 39 1 2.2938 -2.4250 -2.2889 40 1 4.0328 -2.7806 -0.0622 41 1 6.6578 -2.5753 -0.5263 42 1 5.0906 0.0188 -0.6886 43 1 5.8092 -0.7762 0.7445 44 1 7.1086 1.7386 1.1348 45 1 9.2197 2.8455 0.5276 46 1 10.5106 2.0524 -1.4151 47 1 9.6864 0.1553 -2.7463 48 1 7.9307 -2.0794 -2.4473 49 1 6.6900 -0.9646 -3.0956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024673459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:15 Heat of formation + Delta-G solvation = 1.622599 kcal Electronic energy + Delta-G solvation = -28960.198406 eV Core-core repulsion = 25272.841568 eV Total energy + Delta-G solvation = -3687.356837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.42102 -38.98263 -37.62100 -35.29863 -34.21705 -32.92176 -31.39494 -30.80502 -29.95109 -29.14862 -27.21311 -26.00638 -24.77406 -23.02285 -22.09330 -21.28890 -20.90034 -20.59191 -19.58419 -18.90523 -17.29417 -16.33374 -16.09512 -15.78892 -15.43387 -15.22233 -14.76183 -14.32936 -14.14210 -13.94576 -13.56746 -13.32158 -13.19482 -13.08757 -12.92344 -12.74921 -12.60244 -12.28199 -12.05233 -11.90891 -11.54142 -11.24374 -11.16848 -11.10993 -11.03125 -11.00501 -10.80451 -10.73005 -10.32654 -10.23887 -10.18004 -9.82754 -9.58500 -9.36603 -9.23572 -8.77934 -8.48907 -8.45113 -8.18100 -6.46927 -5.81051 -3.39854 1.37983 1.41060 3.09423 3.32719 3.37446 3.42093 3.69927 3.79012 4.40756 4.43636 4.63989 4.99185 5.02907 5.09189 5.11048 5.27622 5.29923 5.38351 5.47455 5.53608 5.57908 5.66002 5.78895 5.80567 5.83163 5.88351 5.93398 6.10525 6.12932 6.14299 6.21909 6.24441 6.29721 6.41042 6.46125 6.47042 6.50892 6.59978 6.70988 6.74513 6.80934 6.89084 6.98224 7.02274 7.04510 7.16117 7.52116 7.66914 7.81687 8.09794 8.50807 8.75277 9.19879 9.77749 10.42228 11.23930 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003960 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.503135 B = 7068.135170 C = 8329.222368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.017 3.983 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.167 3.833 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.030 0.970 16 C 0.135 3.865 17 N -0.697 5.697 18 C 0.517 3.483 19 O -0.552 6.552 20 C -0.108 4.108 21 C -0.075 4.075 22 C -0.090 4.090 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.109 4.109 27 C -0.093 4.093 28 C -0.067 4.067 29 H 0.252 0.748 30 H -0.004 1.004 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.405 0.595 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.077 0.923 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -3.357 1.192 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.183 4.183 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.397 4.397 8 H 0.095 0.905 9 N -0.308 5.308 10 C 0.042 3.958 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.052 3.948 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.347 5.347 18 C 0.303 3.697 19 O -0.431 6.431 20 C -0.130 4.130 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.093 4.093 28 C -0.104 4.104 29 H 0.062 0.938 30 H 0.014 0.986 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.241 0.759 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.095 0.905 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.364 -3.195 0.345 12.775 hybrid contribution 0.175 1.087 0.417 1.178 sum 12.539 -2.108 0.762 12.738 Atomic orbital electron populations 1.69939 1.05305 1.25311 1.52632 1.25380 0.95210 0.98347 0.99405 0.86597 0.79570 0.84421 0.77957 1.21278 1.21707 1.19913 1.19443 0.91382 0.83185 1.45696 0.90494 1.44114 1.40932 1.06352 1.39384 1.20718 0.86373 0.99590 0.89112 1.21954 0.98825 0.95971 0.99944 1.21438 0.97371 0.98108 0.97621 1.21940 0.97212 0.99288 0.98257 1.20883 0.92112 0.90684 0.91099 0.95272 1.21355 0.83314 0.98509 0.95668 1.46024 1.15245 1.62747 1.10696 1.20126 0.84655 0.77667 0.87286 1.90646 1.81801 1.56172 1.14486 1.21950 0.94534 0.98527 0.97968 1.21061 0.95888 0.93335 1.00933 1.20598 0.96265 0.96276 0.95823 1.20675 0.96334 0.95515 0.99893 1.21000 0.95301 1.00098 0.97794 1.20984 1.00020 0.97198 0.96029 1.20586 0.95593 0.96506 1.00054 1.20656 0.94742 0.97692 0.96179 1.20932 0.96124 0.94837 0.98507 0.93759 0.98600 0.89774 0.94513 0.90574 0.93965 0.93564 0.91794 0.93752 0.93055 0.90419 0.75881 0.87900 0.89000 0.89561 0.86155 0.86080 0.86133 0.86333 0.90482 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 11.13 55.49 0.62 -23.64 16 2 C 0.02 0.45 5.05 -17.43 -0.09 0.36 16 3 Si 0.89 20.88 29.57 -169.99 -5.03 15.85 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.27 -6.48 7.83 -15.06 -0.12 -6.60 16 8 H 0.08 1.77 4.83 -52.49 -0.25 1.51 16 9 N -0.58 -13.07 2.92 -164.78 -0.48 -13.55 16 10 C 0.17 3.71 5.60 -3.71 -0.02 3.69 16 11 C -0.13 -2.59 6.09 -26.45 -0.16 -2.75 16 12 C -0.11 -1.89 5.89 -26.53 -0.16 -2.05 16 13 C -0.13 -2.30 5.37 -26.61 -0.14 -2.44 16 14 C 0.16 3.03 2.97 -67.60 -0.20 2.83 16 15 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 16 C 0.14 2.55 4.55 -4.04 -0.02 2.53 16 17 N -0.70 -12.11 3.31 -60.29 -0.20 -12.31 16 18 C 0.52 9.09 7.01 -10.99 -0.08 9.01 16 19 O -0.55 -11.55 15.50 5.56 0.09 -11.46 16 20 C -0.11 -1.54 3.47 -90.37 -0.31 -1.85 16 21 C -0.07 -1.13 6.31 -26.85 -0.17 -1.30 16 22 C -0.09 -1.31 6.14 -104.20 -0.64 -1.95 16 23 C -0.11 -1.42 10.04 -39.53 -0.40 -1.82 16 24 C -0.12 -1.44 10.05 -39.63 -0.40 -1.84 16 25 C -0.12 -1.38 10.05 -39.63 -0.40 -1.78 16 26 C -0.11 -1.32 10.04 -39.53 -0.40 -1.72 16 27 C -0.09 -1.28 6.14 -104.21 -0.64 -1.92 16 28 C -0.07 -0.93 6.10 -26.86 -0.16 -1.09 16 29 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.08 2.12 6.12 -51.93 -0.32 1.80 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.78 7.86 -51.93 -0.41 1.37 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.75 7.82 -51.93 -0.41 1.34 16 40 H 0.41 6.59 7.52 -40.82 -0.31 6.28 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.66 7.89 -51.93 -0.41 1.25 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.10 1.59 6.98 -51.93 -0.36 1.23 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -28.84 381.57 -11.69 -40.53 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.94 Total: 9.51 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -4.50 Total: -10.69 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.06 Total: -49.50 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.84 -11.69 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024673459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.157 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds