Wall clock time and date at job start Tue Mar 31 2020 16:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00365 * 2 1 4 4 H 1.48496 * 109.47442 * 94.78126 * 3 2 1 5 5 H 1.48501 * 109.47529 * 214.78511 * 3 2 1 6 6 H 1.48501 * 109.47015 * 334.78405 * 3 2 1 7 7 C 1.38812 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99827 * 320.82190 * 7 2 1 9 9 N 1.36936 * 120.00632 * 140.81776 * 7 2 1 10 10 C 1.46930 * 120.62681 * 341.35560 * 9 7 2 11 11 C 1.53188 * 108.77195 * 233.58385 * 10 9 7 12 12 C 1.53043 * 109.31433 * 305.35895 * 11 10 9 13 13 C 1.53042 * 109.53556 * 61.36880 * 12 11 10 14 14 C 1.46918 * 120.63486 * 161.06634 * 9 7 2 15 15 H 1.08999 * 109.59245 * 246.20639 * 14 9 7 16 16 C 1.53005 * 109.58628 * 6.63497 * 14 9 7 17 17 N 1.46500 * 109.46767 * 299.32342 * 16 14 9 18 18 C 1.34777 * 119.99930 * 180.02562 * 17 16 14 19 19 O 1.21280 * 119.99906 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00156 * 180.02562 * 18 17 16 21 21 C 1.54349 * 110.82125 * 292.96534 * 20 18 17 22 22 C 1.51363 * 105.17408 * 215.42781 * 21 20 18 23 23 C 1.38496 * 130.39262 * 197.17286 * 22 21 20 24 24 C 1.38104 * 120.21741 * 180.02562 * 23 22 21 25 25 C 1.38261 * 119.93222 * 359.97093 * 24 23 22 26 26 C 1.38095 * 119.93629 * 0.02562 * 25 24 23 27 27 C 1.38217 * 109.75635 * 17.19011 * 22 21 20 28 28 C 1.51370 * 109.76001 * 359.97438 * 27 22 21 29 29 H 0.96997 * 119.99886 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58651 * 353.36321 * 10 9 7 31 31 H 1.08996 * 109.58829 * 113.64802 * 10 9 7 32 32 H 1.08997 * 109.50502 * 65.31600 * 11 10 9 33 33 H 1.09002 * 109.49666 * 185.41268 * 11 10 9 34 34 H 1.08991 * 109.46366 * 181.38737 * 12 11 10 35 35 H 1.09001 * 109.46352 * 301.35449 * 12 11 10 36 36 H 1.09001 * 109.50090 * 58.58201 * 13 12 11 37 37 H 1.09001 * 109.50050 * 178.68615 * 13 12 11 38 38 H 1.08997 * 109.47154 * 59.32186 * 16 14 9 39 39 H 1.09004 * 109.46836 * 179.32290 * 16 14 9 40 40 H 0.97004 * 120.00241 * 359.97438 * 17 16 14 41 41 H 1.09005 * 110.73283 * 56.58636 * 20 18 17 42 42 H 1.08999 * 110.30555 * 334.35484 * 21 20 18 43 43 H 1.09011 * 110.30068 * 96.50474 * 21 20 18 44 44 H 1.07999 * 119.89359 * 0.02562 * 23 22 21 45 45 H 1.08001 * 120.03834 * 179.97438 * 24 23 22 46 46 H 1.07998 * 120.02574 * 179.97438 * 25 24 23 47 47 H 1.07994 * 119.89329 * 180.02562 * 26 25 24 48 48 H 1.09003 * 110.30419 * 223.88886 * 28 27 22 49 49 H 1.08998 * 110.30170 * 101.73806 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5989 1.9880 1.3951 5 1 3.4936 1.4714 -0.7987 6 1 1.4008 2.6797 -0.5965 7 6 2.0102 -1.2022 -0.0005 8 1 1.6523 -2.0326 0.5900 9 7 3.1487 -1.3353 -0.7498 10 6 3.4333 -0.4048 -1.8507 11 6 3.6931 -1.2139 -3.1253 12 6 4.8040 -2.2328 -2.8605 13 6 4.3614 -3.1974 -1.7579 14 6 4.1118 -2.4073 -0.4641 15 1 5.0475 -1.9736 -0.1114 16 6 3.5395 -3.3393 0.6059 17 7 3.2971 -2.5804 1.8354 18 6 2.7913 -3.1992 2.9206 19 8 2.5364 -4.3842 2.8792 20 6 2.5413 -2.4184 4.1851 21 6 3.8712 -1.9456 4.8098 22 6 3.6542 -2.0189 6.3060 23 6 4.3604 -1.4357 7.3450 24 6 3.9727 -1.6469 8.6535 25 6 2.8759 -2.4426 8.9283 26 6 2.1705 -3.0249 7.8938 27 6 2.5580 -2.8147 6.5807 28 6 1.9629 -3.3301 5.2878 29 1 -0.4850 0.8400 0.0004 30 1 2.5777 0.2530 -2.0036 31 1 4.3132 0.1907 -1.6076 32 1 2.7820 -1.7365 -3.4166 33 1 3.9996 -0.5417 -3.9268 34 1 5.0079 -2.7931 -3.7728 35 1 5.7077 -1.7111 -2.5453 36 1 3.4440 -3.7013 -2.0619 37 1 5.1435 -3.9370 -1.5859 38 1 2.6014 -3.7664 0.2517 39 1 4.2504 -4.1406 0.8077 40 1 3.5013 -1.6326 1.8686 41 1 1.8784 -1.5747 3.9930 42 1 4.6850 -2.6071 4.5128 43 1 4.0871 -0.9204 4.5087 44 1 5.2169 -0.8137 7.1311 45 1 4.5257 -1.1910 9.4615 46 1 2.5717 -2.6091 9.9511 47 1 1.3136 -3.6459 8.1092 48 1 0.8761 -3.2505 5.3135 49 1 2.2633 -4.3641 5.1190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024673461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:18 Heat of formation + Delta-G solvation = 14.513242 kcal Electronic energy + Delta-G solvation = -28571.731135 eV Core-core repulsion = 24884.933278 eV Total energy + Delta-G solvation = -3686.797857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.42115 -39.05152 -37.93441 -35.32757 -34.30578 -33.06860 -31.45663 -31.02538 -30.66760 -29.20070 -27.23884 -26.19181 -24.80275 -23.06247 -22.69724 -21.36317 -20.93017 -20.64499 -19.69030 -19.14678 -17.11301 -16.51730 -16.16942 -15.69018 -15.68035 -15.33997 -14.88284 -14.82097 -14.15267 -13.80961 -13.70963 -13.60355 -13.24977 -13.22595 -13.07910 -12.82859 -12.66745 -12.50343 -12.26973 -12.07436 -11.82428 -11.72289 -11.41784 -11.22386 -11.05089 -10.99458 -10.79405 -10.77786 -10.52043 -10.49704 -10.21437 -9.92976 -9.71355 -9.30494 -9.20881 -8.82975 -8.49290 -8.46180 -8.29121 -7.13413 -6.07517 -3.21047 1.33366 1.36560 3.14080 3.33788 3.45470 3.51525 3.72419 3.75570 4.38437 4.52649 4.61887 4.75759 4.95471 4.98643 5.05820 5.15693 5.19760 5.26651 5.31031 5.43583 5.48912 5.52272 5.58834 5.64058 5.77318 5.78513 5.82473 5.88178 5.90992 5.96005 6.10706 6.14084 6.17828 6.20155 6.24307 6.30966 6.42139 6.42757 6.44413 6.46128 6.49677 6.60607 6.66847 6.76926 6.81060 6.97587 7.02759 7.11256 7.84789 8.16594 8.26157 8.80294 8.88925 9.69637 10.07350 11.04751 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003438 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.810646 B = 8142.519688 C = 8902.913038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.040 3.960 3 Si 0.814 3.186 4 H -0.294 1.294 5 H -0.251 1.251 6 H -0.297 1.297 7 C -0.282 4.282 8 H 0.099 0.901 9 N -0.598 5.598 10 C 0.146 3.854 11 C -0.140 4.140 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.164 3.836 15 H 0.035 0.965 16 C 0.133 3.867 17 N -0.695 5.695 18 C 0.522 3.478 19 O -0.558 6.558 20 C -0.110 4.110 21 C -0.071 4.071 22 C -0.094 4.094 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.087 4.087 28 C -0.068 4.068 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.411 0.589 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.079 0.921 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 -3.361 9.236 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.161 4.161 3 Si 0.640 3.360 4 H -0.222 1.222 5 H -0.175 1.175 6 H -0.224 1.224 7 C -0.408 4.408 8 H 0.117 0.883 9 N -0.323 5.323 10 C 0.021 3.979 11 C -0.179 4.179 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.057 3.943 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.345 5.345 18 C 0.308 3.692 19 O -0.438 6.438 20 C -0.131 4.131 21 C -0.108 4.108 22 C -0.094 4.094 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.088 4.088 28 C -0.105 4.105 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.098 0.902 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.288 -4.123 9.187 13.699 hybrid contribution 0.380 1.766 0.077 1.808 sum 9.667 -2.357 9.263 13.595 Atomic orbital electron populations 1.70189 1.06197 1.26789 1.48111 1.24992 0.94541 0.97262 0.99312 0.88155 0.82444 0.86914 0.78448 1.22167 1.17529 1.22429 1.19034 0.98226 0.97942 1.25644 0.88348 1.44431 1.22505 1.31838 1.33489 1.21408 0.98579 0.91514 0.86400 1.22085 0.98621 0.98327 0.98876 1.21364 0.98179 0.97282 0.97724 1.22008 1.00900 0.97609 0.96253 1.20794 0.92125 0.89146 0.92209 0.94749 1.21305 1.00712 0.93409 0.83714 1.45972 1.63506 1.13833 1.11186 1.20086 0.77129 0.87421 0.84612 1.90631 1.52924 1.15929 1.84325 1.21961 0.98309 0.99676 0.93148 1.20981 0.96995 1.02524 0.90300 1.20570 0.96026 0.97653 0.95184 1.20612 0.99854 1.00087 0.91906 1.20991 0.97653 0.99591 0.96171 1.21004 0.96099 0.98219 0.98729 1.20626 1.00228 1.00506 0.91353 1.20702 0.96321 0.97200 0.94530 1.20946 1.00525 1.00440 0.88620 0.92891 0.91633 0.95594 0.91841 0.93165 0.93182 0.92860 0.91534 0.92687 0.90987 0.92433 0.75260 0.87094 0.89794 0.89795 0.86296 0.86118 0.86103 0.86224 0.90211 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.10 13.97 55.49 0.78 -24.32 16 2 C 0.04 1.07 4.86 -17.43 -0.08 0.98 16 3 Si 0.81 19.32 26.41 -169.99 -4.49 14.83 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.25 -5.55 4.48 56.52 0.25 -5.29 16 6 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.28 -6.96 7.73 -15.06 -0.12 -7.07 16 8 H 0.10 2.61 5.44 -52.48 -0.29 2.33 16 9 N -0.60 -12.65 2.83 -164.52 -0.47 -13.12 16 10 C 0.15 2.97 4.25 -3.71 -0.02 2.96 16 11 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 12 C -0.11 -1.59 5.88 -26.69 -0.16 -1.75 16 13 C -0.13 -1.97 5.40 -26.38 -0.14 -2.12 16 14 C 0.16 2.88 3.02 -67.37 -0.20 2.67 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 16 C 0.13 2.36 4.42 -4.04 -0.02 2.35 16 17 N -0.69 -12.40 3.63 -60.29 -0.22 -12.62 16 18 C 0.52 9.41 7.04 -10.99 -0.08 9.34 16 19 O -0.56 -11.63 15.51 5.56 0.09 -11.54 16 20 C -0.11 -1.67 3.47 -90.37 -0.31 -1.99 16 21 C -0.07 -0.93 6.31 -26.85 -0.17 -1.10 16 22 C -0.09 -1.24 6.14 -104.21 -0.64 -1.88 16 23 C -0.11 -1.23 10.04 -39.54 -0.40 -1.63 16 24 C -0.13 -1.32 10.05 -39.62 -0.40 -1.72 16 25 C -0.12 -1.29 10.05 -39.63 -0.40 -1.69 16 26 C -0.11 -1.29 10.04 -39.53 -0.40 -1.69 16 27 C -0.09 -1.18 6.14 -104.20 -0.64 -1.82 16 28 C -0.07 -0.99 6.10 -26.86 -0.16 -1.15 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.07 1.48 4.99 -51.93 -0.26 1.22 16 31 H 0.03 0.53 6.83 -51.93 -0.35 0.17 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.48 7.50 -51.93 -0.39 1.09 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.41 7.34 7.43 -40.82 -0.30 7.04 16 41 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 43 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.10 1.54 6.98 -51.93 -0.36 1.18 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -29.75 375.22 -11.14 -40.89 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.99 Total: 10.08 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -4.49 Total: -9.85 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.09 Total: -50.06 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.49 Total: 14.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.75 -11.14 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024673461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.405 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds