Wall clock time and date at job start Tue Mar 31 2020 16:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48508 * 109.47139 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47410 * 120.00087 * 3 2 1 6 6 H 1.48498 * 109.47380 * 240.00486 * 3 2 1 7 7 C 1.38809 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00390 * 194.00824 * 7 2 1 9 9 N 1.36941 * 119.99801 * 14.00814 * 7 2 1 10 10 C 1.46919 * 120.63107 * 31.07941 * 9 7 2 11 11 C 1.53192 * 108.77941 * 126.36825 * 10 9 7 12 12 C 1.53042 * 109.31165 * 54.63269 * 11 10 9 13 13 C 1.53043 * 109.53965 * 298.63882 * 12 11 10 14 14 C 1.46928 * 120.62715 * 210.79588 * 9 7 2 15 15 H 1.09006 * 109.58153 * 113.84643 * 14 9 7 16 16 C 1.52996 * 109.59024 * 353.42238 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.22257 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21551 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.47849 * 119.99543 * 180.02562 * 18 17 16 21 21 C 1.39587 * 120.18888 * 0.02562 * 20 18 17 22 22 C 1.37810 * 119.78537 * 179.97438 * 21 20 18 23 23 C 1.38662 * 120.40987 * 359.97438 * 22 21 20 24 24 C 1.38373 * 120.08106 * 0.02562 * 23 22 21 25 25 C 1.38240 * 119.99573 * 359.73923 * 24 23 22 26 26 C 1.51392 * 109.74574 * 179.97438 * 24 23 22 27 27 C 1.54329 * 105.17503 * 17.22451 * 26 24 23 28 28 C 1.51425 * 130.21898 * 179.97438 * 23 22 21 29 29 H 0.97003 * 120.00608 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58590 * 246.15766 * 10 9 7 31 31 H 1.08999 * 109.59035 * 6.43557 * 10 9 7 32 32 H 1.08992 * 109.50185 * 174.58577 * 11 10 9 33 33 H 1.08998 * 109.49520 * 294.68460 * 11 10 9 34 34 H 1.08999 * 109.45964 * 58.65547 * 12 11 10 35 35 H 1.08997 * 109.45896 * 178.63389 * 12 11 10 36 36 H 1.08998 * 109.49835 * 181.31687 * 13 12 11 37 37 H 1.09000 * 109.49397 * 301.38259 * 13 12 11 38 38 H 1.08998 * 109.46969 * 180.22803 * 16 14 9 39 39 H 1.08997 * 109.47304 * 300.22431 * 16 14 9 40 40 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 41 41 H 1.07997 * 120.11042 * 359.95078 * 21 20 18 42 42 H 1.08003 * 119.79418 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.94955 * 180.25504 * 25 24 23 44 44 H 1.09001 * 110.30016 * 136.15358 * 26 24 23 45 45 H 1.09010 * 110.30275 * 258.29868 * 26 24 23 46 46 H 1.09004 * 110.81431 * 91.81129 * 27 26 24 47 47 H 1.08994 * 110.82355 * 215.15534 * 27 26 24 48 48 H 1.09006 * 110.29838 * 281.72794 * 28 23 22 49 49 H 1.08992 * 110.30335 * 43.87399 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0662 -1.2161 0.2259 9 7 1.3561 -2.3703 -0.2881 10 6 0.2116 -2.3801 -1.2093 11 6 0.4707 -3.4171 -2.3067 12 6 0.7703 -4.7723 -1.6619 13 6 2.0274 -4.6606 -0.7963 14 6 1.7894 -3.6386 0.3139 15 1 1.0148 -4.0073 0.9863 16 6 3.0875 -3.4193 1.0935 17 7 2.8597 -2.4347 2.1541 18 6 3.8694 -2.0821 2.9744 19 8 4.9690 -2.5807 2.8338 20 6 3.6394 -1.0889 4.0451 21 6 2.3780 -0.5143 4.2103 22 6 2.1727 0.4102 5.2114 23 6 3.2111 0.7728 6.0558 24 6 4.4638 0.2067 5.8972 25 6 4.6797 -0.7253 4.8994 26 6 5.4130 0.7661 6.9355 27 6 4.5065 1.3977 8.0130 28 6 3.2355 1.7508 7.2116 29 1 -0.4851 0.8400 0.0004 30 1 -0.6943 -2.6441 -0.6637 31 1 0.0940 -1.3932 -1.6567 32 1 -0.4111 -3.5032 -2.9415 33 1 1.3238 -3.1042 -2.9088 34 1 -0.0730 -5.0730 -1.0403 35 1 0.9312 -5.5175 -2.4410 36 1 2.2535 -5.6318 -0.3560 37 1 2.8659 -4.3365 -1.4127 38 1 3.4093 -4.3621 1.5358 39 1 3.8599 -3.0529 0.4174 40 1 1.9821 -2.0371 2.2665 41 1 1.5657 -0.7931 3.5555 42 1 1.1969 0.8552 5.3391 43 1 5.6567 -1.1697 4.7789 44 1 6.0141 -0.0336 7.3682 45 1 6.0563 1.5251 6.4900 46 1 4.2810 0.6780 8.8000 47 1 4.9665 2.2936 8.4298 48 1 3.2947 2.7739 6.8400 49 1 2.3492 1.6240 7.8331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024794024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:13 Heat of formation + Delta-G solvation = -2.297452 kcal Electronic energy + Delta-G solvation = -28727.767009 eV Core-core repulsion = 25040.240185 eV Total energy + Delta-G solvation = -3687.526823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.20689 -38.93804 -37.67867 -35.35291 -34.19055 -33.08483 -31.31431 -30.94002 -29.94538 -29.01033 -27.37089 -26.00144 -24.82129 -22.74659 -22.15874 -21.78905 -20.82647 -20.68194 -19.47611 -19.01915 -17.32304 -16.31735 -15.90788 -15.61735 -15.54467 -15.19621 -14.68863 -14.32084 -14.03779 -13.96522 -13.70292 -13.43160 -13.29279 -12.97412 -12.93828 -12.80327 -12.54406 -12.35731 -12.07274 -11.84944 -11.68860 -11.47970 -11.28790 -11.21001 -10.97086 -10.87203 -10.78330 -10.65419 -10.55348 -10.30207 -10.15267 -10.00657 -9.58744 -9.46882 -9.26249 -8.67565 -8.59266 -8.44254 -8.14300 -6.67857 -5.86242 -3.32277 1.12224 1.56043 3.26995 3.35232 3.39295 3.44438 3.81393 4.18078 4.39742 4.42966 4.50368 4.86443 5.03728 5.14913 5.21489 5.24130 5.30974 5.34711 5.49520 5.55619 5.60185 5.60607 5.63151 5.68240 5.70153 5.73015 5.88572 5.95978 6.02507 6.04304 6.09475 6.15552 6.23811 6.30541 6.35440 6.41202 6.55860 6.59027 6.63074 6.69513 6.70148 6.72448 6.84772 6.97270 7.06960 7.19139 7.36615 7.63373 7.77879 8.27264 8.38874 8.86359 9.14808 9.76065 10.34064 11.20482 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003840 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.965435 B = 7289.797230 C = 8360.600329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.012 3.988 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.687 5.687 18 C 0.551 3.449 19 O -0.563 6.563 20 C -0.124 4.124 21 C -0.074 4.074 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.052 4.052 26 C -0.079 4.079 27 C -0.120 4.120 28 C -0.083 4.083 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.415 0.585 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -1.078 10.734 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.010 3.990 17 N -0.338 5.338 18 C 0.338 3.662 19 O -0.445 6.445 20 C -0.127 4.127 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.071 4.071 26 C -0.116 4.116 27 C -0.157 4.157 28 C -0.120 4.120 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.774 -1.289 10.619 11.343 hybrid contribution -0.103 1.173 -0.283 1.211 sum 3.671 -0.116 10.336 10.969 Atomic orbital electron populations 1.69991 1.05085 1.25617 1.53592 1.25016 0.95138 0.97973 1.00653 0.86580 0.79215 0.83860 0.78604 1.21596 1.20473 1.21035 1.19167 0.92038 0.84031 1.42952 0.91303 1.44064 1.35767 1.01919 1.49491 1.20758 0.88457 0.97507 0.88494 1.22194 0.99961 0.96587 0.99622 1.21360 0.97551 0.97374 0.98197 1.21870 0.98244 0.98261 0.98367 1.20644 0.93183 0.88538 0.92286 0.95084 1.21315 0.98356 0.90525 0.88790 1.45944 1.14053 1.42851 1.30915 1.18162 0.84573 0.81747 0.81724 1.90689 1.24212 1.56340 1.73233 1.19905 0.94644 1.00161 0.97975 1.21403 0.96555 0.94910 0.96430 1.20560 0.98732 0.98552 0.95485 1.20761 0.93879 0.96937 0.96667 1.20460 0.95620 0.97866 0.97626 1.20637 0.98903 0.95094 0.92465 1.21014 0.96845 0.99858 0.93897 1.22284 0.95316 1.00776 0.97343 1.21081 0.98755 0.97982 0.94212 0.93546 0.96372 0.89734 0.93540 0.92841 0.92873 0.93711 0.92976 0.92082 0.92542 0.91486 0.74637 0.84515 0.85766 0.85181 0.90744 0.90322 0.90996 0.90652 0.90129 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 11.23 55.49 0.62 -23.35 16 2 C 0.01 0.30 4.97 -17.43 -0.09 0.21 16 3 Si 0.89 21.23 29.58 -169.99 -5.03 16.21 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.27 6.98 -15.06 -0.11 -6.38 16 8 H 0.07 1.79 5.84 -52.48 -0.31 1.48 16 9 N -0.59 -13.34 2.98 -165.03 -0.49 -13.84 16 10 C 0.17 3.87 5.27 -3.71 -0.02 3.85 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.11 -1.75 5.89 -26.69 -0.16 -1.90 16 13 C -0.13 -2.14 5.35 -26.83 -0.14 -2.29 16 14 C 0.16 3.10 2.99 -67.82 -0.20 2.89 16 15 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 16 C 0.13 2.58 4.42 -4.04 -0.02 2.56 16 17 N -0.69 -13.62 3.79 -61.25 -0.23 -13.86 16 18 C 0.55 11.19 7.77 -12.33 -0.10 11.09 16 19 O -0.56 -12.67 16.35 5.32 0.09 -12.58 16 20 C -0.12 -2.25 5.87 -105.01 -0.62 -2.87 16 21 C -0.07 -1.26 9.54 -39.23 -0.37 -1.64 16 22 C -0.12 -1.72 10.02 -39.58 -0.40 -2.12 16 23 C -0.08 -1.13 6.14 -104.06 -0.64 -1.77 16 24 C -0.12 -1.64 6.12 -104.23 -0.64 -2.28 16 25 C -0.05 -0.86 9.59 -39.13 -0.38 -1.23 16 26 C -0.08 -0.83 6.77 -26.85 -0.18 -1.02 16 27 C -0.12 -1.04 7.08 -25.33 -0.18 -1.22 16 28 C -0.08 -0.85 6.77 -26.82 -0.18 -1.03 16 29 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 2.14 6.19 -51.93 -0.32 1.81 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.41 7.42 -51.93 -0.39 1.02 16 40 H 0.41 8.41 5.43 -40.82 -0.22 8.19 16 41 H 0.14 2.37 6.41 -52.49 -0.34 2.04 16 42 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.13 2.11 7.64 -52.49 -0.40 1.70 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -28.67 380.30 -11.76 -40.43 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.87 Total: 9.20 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.57 Total: -7.95 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.10 Total: -51.04 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.67 -11.76 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024794024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.132 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds