Wall clock time and date at job start Tue Mar 31 2020 16:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99741 * 2 1 4 4 H 1.48501 * 109.47146 * 90.00157 * 3 2 1 5 5 H 1.48506 * 109.46745 * 209.99717 * 3 2 1 6 6 H 1.48498 * 109.47300 * 329.99492 * 3 2 1 7 7 C 1.38809 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00314 * 167.47634 * 7 2 1 9 9 N 1.36942 * 119.99674 * 347.47968 * 7 2 1 10 10 C 1.46921 * 120.63297 * 328.90690 * 9 7 2 11 11 C 1.53195 * 108.77780 * 233.59105 * 10 9 7 12 12 C 1.53046 * 109.30966 * 305.36282 * 11 10 9 13 13 C 1.53039 * 109.53848 * 61.36527 * 12 11 10 14 14 C 1.46931 * 120.62935 * 148.62973 * 9 7 2 15 15 H 1.08998 * 109.58417 * 246.20305 * 14 9 7 16 16 C 1.53003 * 109.58405 * 6.62391 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.59942 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21556 * 120.00184 * 359.97438 * 18 17 16 20 20 C 1.47846 * 119.99861 * 179.97438 * 18 17 16 21 21 C 1.39593 * 120.18789 * 359.72241 * 20 18 17 22 22 C 1.37797 * 119.78658 * 179.77918 * 21 20 18 23 23 C 1.38669 * 120.41232 * 0.45870 * 22 21 20 24 24 C 1.38377 * 120.07708 * 359.80165 * 23 22 21 25 25 C 1.38241 * 119.99421 * 359.97201 * 24 23 22 26 26 C 1.51396 * 109.74172 * 179.97438 * 24 23 22 27 27 C 1.54330 * 105.17466 * 342.78310 * 26 24 23 28 28 C 1.51421 * 130.21879 * 179.75609 * 23 22 21 29 29 H 0.97001 * 120.00398 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58668 * 353.37541 * 10 9 7 31 31 H 1.08997 * 109.59104 * 113.65591 * 10 9 7 32 32 H 1.08999 * 109.50009 * 65.31358 * 11 10 9 33 33 H 1.09001 * 109.49549 * 185.38322 * 11 10 9 34 34 H 1.08989 * 109.46232 * 181.38697 * 12 11 10 35 35 H 1.08999 * 109.45848 * 301.35989 * 12 11 10 36 36 H 1.08998 * 109.50011 * 58.58092 * 13 12 11 37 37 H 1.08996 * 109.49937 * 178.65689 * 13 12 11 38 38 H 1.09000 * 109.47267 * 59.59858 * 16 14 9 39 39 H 1.09005 * 109.46599 * 179.59897 * 16 14 9 40 40 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 41 41 H 1.07997 * 120.10290 * 0.02562 * 21 20 18 42 42 H 1.08003 * 119.79856 * 180.23048 * 22 21 20 43 43 H 1.07998 * 119.94622 * 180.02562 * 25 24 23 44 44 H 1.09001 * 110.30581 * 101.70505 * 26 24 23 45 45 H 1.09004 * 110.30229 * 223.85499 * 26 24 23 46 46 H 1.09004 * 110.81907 * 268.18675 * 27 26 24 47 47 H 1.09000 * 110.99266 * 144.72237 * 27 26 24 48 48 H 1.08994 * 110.30324 * 316.20292 * 28 23 22 49 49 H 1.09000 * 110.29931 * 78.24813 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4401 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0709 -1.2133 -0.2023 9 7 1.3499 -2.3738 0.2582 10 6 0.1851 -2.3955 1.1534 11 6 0.4194 -3.4476 2.2420 12 6 0.7327 -4.7941 1.5855 13 6 2.0088 -4.6714 0.7497 14 6 1.7891 -3.6322 -0.3602 15 1 1.0236 -3.9868 -1.0504 16 6 3.0990 -3.4021 -1.1167 17 7 2.8879 -2.4011 -2.1654 18 6 3.9101 -2.0368 -2.9648 19 8 5.0071 -2.5384 -2.8154 20 6 3.6969 -1.0270 -4.0234 21 6 2.4372 -0.4526 -4.2022 22 6 2.2489 0.4911 -5.1885 23 6 3.3006 0.8668 -6.0105 24 6 4.5504 0.2971 -5.8419 25 6 4.7516 -0.6472 -4.8525 26 6 5.5156 0.8720 -6.8568 27 6 4.6258 1.5215 -7.9377 28 6 3.3430 1.8624 -7.1506 29 1 -0.4851 0.8400 -0.0004 30 1 0.0596 -1.4154 1.6135 31 1 -0.7089 -2.6489 0.5838 32 1 1.2590 -3.1435 2.8672 33 1 -0.4763 -3.5413 2.8561 34 1 0.8756 -5.5500 2.3575 35 1 -0.0966 -5.0855 0.9410 36 1 2.8334 -4.3558 1.3888 37 1 2.2445 -5.6367 0.3017 38 1 3.8614 -3.0468 -0.4235 39 1 3.4268 -4.3383 -1.5687 40 1 2.0124 -2.0010 -2.2848 41 1 1.6139 -0.7440 -3.5669 42 1 1.2753 0.9384 -5.3245 43 1 5.7274 -1.0910 -4.7213 44 1 6.1525 1.6232 -6.3898 45 1 6.1225 0.0786 -7.2931 46 1 4.4117 0.8147 -8.7393 47 1 5.0893 2.4251 -8.3337 48 1 2.4660 1.7459 -7.7873 49 1 3.3953 2.8797 -6.7625 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024794025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:16 Heat of formation + Delta-G solvation = -2.513728 kcal Electronic energy + Delta-G solvation = -28727.412010 eV Core-core repulsion = 25039.875808 eV Total energy + Delta-G solvation = -3687.536202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.21233 -38.93013 -37.65083 -35.35943 -34.19023 -33.07757 -31.32116 -30.92706 -29.92291 -29.00975 -27.37689 -26.00865 -24.82151 -22.75108 -22.14217 -21.79446 -20.83147 -20.67453 -19.48039 -19.02772 -17.32606 -16.32053 -15.91009 -15.61757 -15.54465 -15.20128 -14.69353 -14.32383 -14.02908 -13.95971 -13.70016 -13.43150 -13.29871 -12.97706 -12.94175 -12.80380 -12.54253 -12.35920 -12.05566 -11.85224 -11.68905 -11.48400 -11.29315 -11.20597 -10.96189 -10.87641 -10.80028 -10.66043 -10.55043 -10.29650 -10.14101 -10.00109 -9.58628 -9.46619 -9.26273 -8.68246 -8.60077 -8.44585 -8.14778 -6.67641 -5.85864 -3.33193 1.11450 1.55164 3.26517 3.33060 3.40522 3.45015 3.80847 4.17471 4.39331 4.42668 4.49845 4.86034 5.03173 5.14271 5.21923 5.23953 5.30510 5.34246 5.50272 5.55182 5.59884 5.60122 5.63858 5.67608 5.69774 5.72639 5.88118 5.96484 6.02326 6.04249 6.09011 6.15111 6.23139 6.29822 6.35779 6.41487 6.55060 6.59283 6.62358 6.68877 6.70652 6.73021 6.85388 6.97381 7.06169 7.18869 7.37860 7.65314 7.77999 8.26818 8.39302 8.86051 9.15056 9.75800 10.33842 11.20387 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003840 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.620935 B = 7289.372319 C = 8357.457954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.011 3.989 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.687 5.687 18 C 0.551 3.449 19 O -0.563 6.563 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.052 4.052 26 C -0.079 4.079 27 C -0.120 4.120 28 C -0.084 4.084 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.414 0.586 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -0.919 -10.761 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.338 5.338 18 C 0.338 3.662 19 O -0.444 6.444 20 C -0.127 4.127 21 C -0.094 4.094 22 C -0.133 4.133 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.071 4.071 26 C -0.116 4.116 27 C -0.157 4.157 28 C -0.121 4.121 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.972 -1.136 -10.642 11.416 hybrid contribution -0.131 1.175 0.275 1.214 sum 3.841 0.039 -10.366 11.055 Atomic orbital electron populations 1.69989 1.05073 1.25476 1.53867 1.25040 0.95178 0.97969 1.00667 0.86488 0.79599 0.84193 0.77946 1.21411 1.20167 1.21589 1.19227 0.91706 0.83810 1.43257 0.91220 1.44100 1.34110 1.02454 1.50635 1.20776 0.88130 0.97420 0.88939 1.22196 0.99863 0.96646 0.99633 1.21361 0.97459 0.97384 0.98293 1.22010 0.98090 0.98168 0.98405 1.20832 0.93065 0.88604 0.92229 0.95000 1.21305 0.98346 0.90192 0.89119 1.45930 1.13667 1.41927 1.32233 1.18158 0.84542 0.81882 0.81615 1.90691 1.24633 1.56698 1.72425 1.19907 0.94555 0.99982 0.98214 1.21402 0.96660 0.94943 0.96412 1.20562 0.98635 0.98362 0.95760 1.20765 0.93843 0.96898 0.96743 1.20464 0.95618 0.97746 0.97706 1.20638 0.98856 0.95022 0.92574 1.21009 0.96770 0.99708 0.94112 1.22279 0.95313 1.00726 0.97393 1.21080 0.98679 0.97840 0.94460 0.93596 0.89576 0.96388 0.92854 0.93562 0.93735 0.92895 0.92056 0.93055 0.91473 0.92542 0.74682 0.84525 0.85757 0.85171 0.90312 0.90732 0.90996 0.90643 0.90643 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 11.14 55.49 0.62 -23.39 16 2 C 0.01 0.28 5.00 -17.43 -0.09 0.19 16 3 Si 0.89 21.26 29.57 -169.99 -5.03 16.23 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.25 -6.22 6.98 -15.06 -0.11 -6.33 16 8 H 0.07 1.81 5.87 -52.49 -0.31 1.50 16 9 N -0.59 -13.35 2.97 -164.52 -0.49 -13.84 16 10 C 0.17 3.86 5.26 -3.71 -0.02 3.84 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.91 16 13 C -0.13 -2.13 5.40 -26.39 -0.14 -2.27 16 14 C 0.16 3.08 3.03 -67.37 -0.20 2.88 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C 0.13 2.58 4.44 -4.04 -0.02 2.57 16 17 N -0.69 -13.61 3.80 -61.25 -0.23 -13.84 16 18 C 0.55 11.18 7.77 -12.33 -0.10 11.09 16 19 O -0.56 -12.67 16.35 5.32 0.09 -12.59 16 20 C -0.12 -2.24 5.87 -105.02 -0.62 -2.86 16 21 C -0.08 -1.27 9.54 -39.24 -0.37 -1.65 16 22 C -0.12 -1.71 10.02 -39.58 -0.40 -2.10 16 23 C -0.08 -1.12 6.14 -104.06 -0.64 -1.76 16 24 C -0.12 -1.62 6.13 -104.23 -0.64 -2.26 16 25 C -0.05 -0.85 9.59 -39.14 -0.38 -1.23 16 26 C -0.08 -0.83 6.77 -26.84 -0.18 -1.01 16 27 C -0.12 -1.04 7.08 -25.34 -0.18 -1.22 16 28 C -0.08 -0.84 6.77 -26.84 -0.18 -1.03 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.09 2.18 6.15 -51.93 -0.32 1.86 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.41 7.41 -51.93 -0.38 1.03 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.41 8.38 5.45 -40.82 -0.22 8.16 16 41 H 0.14 2.35 6.41 -52.49 -0.34 2.01 16 42 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.13 2.10 7.64 -52.49 -0.40 1.70 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -28.71 380.32 -11.76 -40.47 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.87 Total: 9.11 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.57 Total: -7.89 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.10 Total: -51.08 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.71 -11.76 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024794025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.955 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds