Wall clock time and date at job start Tue Mar 31 2020 16:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48492 * 109.47068 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47141 * 300.00285 * 3 2 1 6 6 H 1.48504 * 109.47257 * 60.00299 * 3 2 1 7 7 C 1.38810 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99854 * 190.25300 * 7 2 1 9 9 N 1.36938 * 120.00325 * 10.25496 * 7 2 1 10 10 C 1.46927 * 120.63045 * 32.61663 * 9 7 2 11 11 C 1.53185 * 108.77680 * 126.36997 * 10 9 7 12 12 C 1.53044 * 109.31387 * 54.63197 * 11 10 9 13 13 C 1.53037 * 109.53836 * 298.64079 * 12 11 10 14 14 C 1.46930 * 120.63191 * 212.33912 * 9 7 2 15 15 H 1.08998 * 109.58352 * 113.83853 * 14 9 7 16 16 C 1.53001 * 109.58542 * 353.41468 * 14 9 7 17 17 N 1.46505 * 109.46686 * 60.12225 * 16 14 9 18 18 C 1.34780 * 119.99443 * 179.97438 * 17 16 14 19 19 O 1.21551 * 120.00353 * 0.02562 * 18 17 16 20 20 C 1.47844 * 119.99820 * 180.02562 * 18 17 16 21 21 C 1.39491 * 120.04362 * 359.97438 * 20 18 17 22 22 C 1.37929 * 119.77041 * 179.97438 * 21 20 18 23 23 C 1.38260 * 120.09834 * 359.97438 * 22 21 20 24 24 C 1.38620 * 120.52342 * 359.97438 * 23 22 21 25 25 C 1.37971 * 119.92922 * 359.78356 * 24 23 22 26 26 C 1.51355 * 109.83232 * 180.29508 * 25 24 23 27 27 C 1.54355 * 105.14885 * 17.39110 * 26 25 24 28 28 C 1.51405 * 130.31002 * 180.02562 * 24 23 22 29 29 H 0.97007 * 119.99726 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58480 * 246.15776 * 10 9 7 31 31 H 1.09003 * 109.58757 * 6.43773 * 10 9 7 32 32 H 1.09003 * 109.50144 * 174.58633 * 11 10 9 33 33 H 1.09002 * 109.49974 * 294.68146 * 11 10 9 34 34 H 1.09010 * 109.45749 * 58.65695 * 12 11 10 35 35 H 1.09002 * 109.46156 * 178.62665 * 12 11 10 36 36 H 1.09001 * 109.49540 * 181.31493 * 13 12 11 37 37 H 1.09002 * 109.49119 * 301.37165 * 13 12 11 38 38 H 1.08996 * 109.47107 * 180.12279 * 16 14 9 39 39 H 1.09002 * 109.47233 * 300.12674 * 16 14 9 40 40 H 0.96990 * 120.00607 * 359.97438 * 17 16 14 41 41 H 1.08003 * 120.11554 * 359.97438 * 21 20 18 42 42 H 1.07999 * 119.95461 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.73869 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.30619 * 136.30402 * 26 25 24 45 45 H 1.08995 * 110.30888 * 258.47239 * 26 25 24 46 46 H 1.08997 * 110.83356 * 91.90458 * 27 26 25 47 47 H 1.09002 * 110.82879 * 215.47943 * 27 26 25 48 48 H 1.08996 * 110.30112 * 281.74574 * 28 24 23 49 49 H 1.08998 * 110.29931 * 43.89574 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0772 -1.2098 0.1659 9 7 1.3419 -2.3785 -0.2122 10 6 0.1668 -2.4239 -1.0930 11 6 0.3844 -3.5113 -2.1498 12 6 0.7000 -4.8374 -1.4540 13 6 1.9861 -4.6934 -0.6371 14 6 1.7900 -3.6205 0.4324 15 1 1.0370 -3.9537 1.1466 16 6 3.1146 -3.3733 1.1571 17 7 2.9275 -2.3382 2.1769 18 6 3.9659 -1.9540 2.9454 19 8 5.0577 -2.4659 2.7921 20 6 3.7771 -0.9099 3.9749 21 6 2.5247 -0.3214 4.1513 22 6 2.3547 0.6518 5.1138 23 6 3.4220 1.0421 5.9012 24 6 4.6698 0.4620 5.7337 25 6 4.8514 -0.5161 4.7777 26 6 6.2882 -0.9917 4.7961 27 6 6.8517 -0.5202 6.1536 28 6 5.9732 0.7149 6.4612 29 1 -0.4850 0.8401 0.0004 30 1 -0.7212 -2.6576 -0.5057 31 1 0.0383 -1.4577 -1.5809 32 1 -0.5188 -3.6213 -2.7500 33 1 1.2179 -3.2311 -2.7939 34 1 -0.1231 -5.1046 -0.7912 35 1 0.8313 -5.6183 -2.2031 36 1 2.2229 -5.6447 -0.1607 37 1 2.8046 -4.4026 -1.2956 38 1 3.4463 -4.2962 1.6327 39 1 3.8658 -3.0442 0.4390 40 1 2.0565 -1.9295 2.2990 41 1 1.6910 -0.6268 3.5363 42 1 1.3863 1.1091 5.2531 43 1 3.2825 1.8049 6.6528 44 1 6.3277 -2.0788 4.7272 45 1 6.8470 -0.5393 3.9769 46 1 6.7278 -1.2915 6.9137 47 1 7.8987 -0.2318 6.0595 48 1 6.4426 1.6262 6.0906 49 1 5.7991 0.7880 7.5347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024821605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:19 Heat of formation + Delta-G solvation = -0.677282 kcal Electronic energy + Delta-G solvation = -29125.120420 eV Core-core repulsion = 25437.663853 eV Total energy + Delta-G solvation = -3687.456568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.27643 -38.73154 -37.55848 -35.55377 -34.10020 -33.08323 -31.61147 -30.50933 -29.91520 -28.85541 -27.33395 -25.93903 -24.83557 -23.14108 -22.14070 -21.27299 -20.95534 -20.40791 -19.59592 -19.04797 -17.17876 -16.24294 -15.90863 -15.61872 -15.54043 -15.11714 -14.69309 -14.30261 -14.16969 -13.99278 -13.70636 -13.41992 -13.03507 -12.94491 -12.80283 -12.74987 -12.50105 -12.31262 -12.01571 -11.72458 -11.65962 -11.22763 -11.16654 -11.04102 -11.02067 -10.95268 -10.81762 -10.78367 -10.55733 -10.27770 -10.13778 -9.99595 -9.55503 -9.44368 -9.17520 -8.70215 -8.57135 -8.36578 -8.14728 -6.65367 -5.86129 -3.34827 1.15641 1.53867 3.30045 3.33011 3.40639 3.45394 3.86144 4.18010 4.41794 4.48007 4.66260 5.04614 5.11091 5.17841 5.21017 5.23746 5.30618 5.35604 5.50596 5.60394 5.64418 5.65166 5.68811 5.78893 5.80477 5.89817 5.96739 6.03794 6.06751 6.15377 6.19029 6.24885 6.31458 6.33606 6.35856 6.41800 6.54609 6.59394 6.63212 6.70418 6.72944 6.74707 6.85675 6.98083 7.08701 7.20400 7.38155 7.66136 7.78074 8.29462 8.40316 8.88717 9.15335 9.75453 10.34107 11.20293 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.004308 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.078811 B = 6498.666299 C = 7662.656245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.011 3.989 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.135 3.865 17 N -0.688 5.688 18 C 0.549 3.451 19 O -0.559 6.559 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.038 4.038 26 C -0.078 4.078 27 C -0.123 4.123 28 C -0.078 4.078 29 H 0.253 0.747 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -2.268 9.482 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.339 5.339 18 C 0.336 3.664 19 O -0.440 6.440 20 C -0.119 4.119 21 C -0.096 4.096 22 C -0.147 4.147 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.039 4.039 26 C -0.115 4.115 27 C -0.160 4.160 28 C -0.115 4.115 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.253 0.747 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.764 -2.498 9.355 11.268 hybrid contribution -0.262 1.279 -0.213 1.323 sum 5.502 -1.219 9.142 10.739 Atomic orbital electron populations 1.69991 1.05068 1.25342 1.54011 1.25082 0.95209 0.97946 1.00592 0.86430 0.79829 0.84534 0.77522 1.20178 1.21564 1.21307 1.19243 0.91204 0.83511 1.43890 0.91288 1.44072 1.32936 1.03214 1.51076 1.20777 0.88063 0.96935 0.89460 1.22202 0.99822 0.96826 0.99533 1.21363 0.97388 0.97402 0.98338 1.21865 0.98079 0.98122 0.98648 1.20650 0.93004 0.88640 0.92387 0.95104 1.21296 0.98252 0.89519 0.89816 1.45960 1.13348 1.39936 1.34673 1.18223 0.84522 0.82282 0.81407 1.90671 1.25205 1.57299 1.70842 1.19670 0.93803 0.99765 0.98620 1.21440 0.96413 0.95068 0.96664 1.20986 0.99045 0.98231 0.96440 1.20738 0.91683 0.99127 0.99164 1.20551 0.94997 0.97781 0.98556 1.20537 0.94941 0.94861 0.93538 1.21066 0.90805 1.02629 0.96984 1.22415 0.99078 0.97104 0.97447 1.21071 0.91985 0.98847 0.99564 0.93642 0.96402 0.89570 0.93561 0.92875 0.92887 0.93733 0.93010 0.92108 0.92616 0.91557 0.74730 0.84577 0.85395 0.86254 0.89361 0.90037 0.91054 0.90747 0.90351 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.03 11.12 55.49 0.62 -23.41 16 2 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16 3 Si 0.89 21.26 29.57 -169.99 -5.03 16.23 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.18 6.92 -15.06 -0.10 -6.29 16 8 H 0.07 1.80 5.91 -52.49 -0.31 1.49 16 9 N -0.59 -13.36 2.98 -165.03 -0.49 -13.86 16 10 C 0.17 3.87 5.25 -3.71 -0.02 3.85 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.75 5.89 -26.69 -0.16 -1.91 16 13 C -0.13 -2.14 5.34 -26.84 -0.14 -2.28 16 14 C 0.16 3.09 3.00 -67.82 -0.20 2.89 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.59 4.42 -4.04 -0.02 2.57 16 17 N -0.69 -13.60 3.81 -61.25 -0.23 -13.83 16 18 C 0.55 11.02 7.77 -12.33 -0.10 10.92 16 19 O -0.56 -12.15 14.71 5.32 0.08 -12.07 16 20 C -0.12 -2.11 5.88 -104.93 -0.62 -2.72 16 21 C -0.08 -1.31 9.54 -39.23 -0.37 -1.69 16 22 C -0.13 -1.89 10.03 -39.69 -0.40 -2.29 16 23 C -0.09 -1.19 10.03 -39.43 -0.40 -1.59 16 24 C -0.12 -1.68 6.13 -104.23 -0.64 -2.32 16 25 C -0.04 -0.62 6.03 -103.82 -0.63 -1.25 16 26 C -0.08 -1.14 5.57 -26.85 -0.15 -1.29 16 27 C -0.12 -1.33 7.10 -25.15 -0.18 -1.51 16 28 C -0.08 -0.85 6.78 -26.66 -0.18 -1.03 16 29 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 2.19 6.18 -51.93 -0.32 1.86 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.39 7.42 -51.93 -0.39 1.01 16 40 H 0.41 8.41 5.41 -40.82 -0.22 8.18 16 41 H 0.14 2.38 6.40 -52.48 -0.34 2.04 16 42 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.09 1.39 7.19 -51.93 -0.37 1.01 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -28.33 377.23 -11.77 -40.10 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.85 Total: 9.72 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -4.55 Total: -8.57 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.11 Total: -51.10 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.33 -11.77 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024821605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.422 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds