Wall clock time and date at job start Tue Mar 31 2020 16:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47490 * 270.00059 * 3 2 1 5 5 H 1.48496 * 109.47227 * 30.00370 * 3 2 1 6 6 H 1.48505 * 109.46975 * 150.00419 * 3 2 1 7 7 C 1.38811 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99963 * 165.36993 * 7 2 1 9 9 N 1.36932 * 120.00010 * 345.36897 * 7 2 1 10 10 C 1.46919 * 120.63243 * 328.40693 * 9 7 2 11 11 C 1.53194 * 108.78025 * 233.58937 * 10 9 7 12 12 C 1.53041 * 109.30961 * 305.36724 * 11 10 9 13 13 C 1.53041 * 109.54040 * 61.36254 * 12 11 10 14 14 C 1.46930 * 120.62914 * 148.38798 * 9 7 2 15 15 H 1.08995 * 109.70220 * 246.26649 * 14 9 7 16 16 C 1.52997 * 109.58857 * 6.62662 * 14 9 7 17 17 N 1.46500 * 109.46831 * 299.10764 * 16 14 9 18 18 C 1.34780 * 119.99938 * 179.97438 * 17 16 14 19 19 O 1.21547 * 119.99972 * 0.02562 * 18 17 16 20 20 C 1.47844 * 119.99783 * 180.27819 * 18 17 16 21 21 C 1.39491 * 120.04460 * 359.45274 * 20 18 17 22 22 C 1.37938 * 119.77115 * 179.69861 * 21 20 18 23 23 C 1.38262 * 120.09370 * 0.58837 * 22 21 20 24 24 C 1.38621 * 120.52320 * 359.68960 * 23 22 21 25 25 C 1.37971 * 119.93622 * 0.02562 * 24 23 22 26 26 C 1.51350 * 109.83016 * 179.97438 * 25 24 23 27 27 C 1.54351 * 105.15130 * 342.83711 * 26 25 24 28 28 C 1.51398 * 130.30124 * 180.02562 * 24 23 22 29 29 H 0.97001 * 119.99386 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58649 * 113.79957 * 10 9 7 31 31 H 1.09000 * 109.70622 * 353.44618 * 10 9 7 32 32 H 1.08997 * 109.50324 * 185.41563 * 11 10 9 33 33 H 1.09003 * 109.49641 * 65.31175 * 11 10 9 34 34 H 1.09007 * 109.45932 * 301.33978 * 12 11 10 35 35 H 1.09004 * 109.44822 * 181.37722 * 12 11 10 36 36 H 1.08996 * 109.49422 * 178.68408 * 13 12 11 37 37 H 1.08992 * 109.52352 * 58.60314 * 13 12 11 38 38 H 1.08996 * 109.47495 * 179.11216 * 16 14 9 39 39 H 1.08997 * 109.47497 * 59.10692 * 16 14 9 40 40 H 0.97000 * 120.00316 * 0.02562 * 17 16 14 41 41 H 1.07998 * 120.11586 * 359.97438 * 21 20 18 42 42 H 1.07998 * 119.95537 * 180.30092 * 22 21 20 43 43 H 1.07999 * 119.73690 * 179.67459 * 23 22 21 44 44 H 1.09000 * 110.30561 * 101.75732 * 26 25 24 45 45 H 1.08997 * 110.30709 * 223.92129 * 26 25 24 46 46 H 1.08997 * 110.83068 * 268.09064 * 27 26 25 47 47 H 1.09002 * 111.00105 * 144.59677 * 27 26 25 48 48 H 1.08999 * 110.30453 * 316.09934 * 28 24 23 49 49 H 1.08997 * 110.30388 * 78.25291 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0640 -1.2173 -0.2368 9 7 1.3588 -2.3689 0.2985 10 6 0.2301 -2.3763 1.2390 11 6 0.5054 -3.4143 2.3316 12 6 0.7906 -4.7700 1.6813 13 6 2.0330 -4.6611 0.7944 14 6 1.7750 -3.6372 -0.3155 15 1 0.9870 -4.0028 -0.9739 16 6 3.0573 -3.4205 -1.1215 17 7 2.8066 -2.4443 -2.1847 18 6 3.7996 -2.0944 -3.0262 19 8 4.9030 -2.5891 -2.9031 20 6 3.5482 -1.1047 -4.0953 21 6 2.2807 -0.5410 -4.2411 22 6 2.0540 0.3865 -5.2367 23 6 3.0768 0.7468 -6.0944 24 6 4.3380 0.1874 -5.9605 25 6 4.5789 -0.7371 -4.9650 26 6 6.0200 -1.1953 -5.0278 27 6 6.5136 -0.7833 -6.4310 28 6 5.6012 0.4166 -6.7629 29 1 -0.4849 0.8401 0.0004 30 1 -0.6857 -2.6379 0.7089 31 1 0.1218 -1.3903 1.6908 32 1 -0.3657 -3.4985 2.9813 33 1 1.3694 -3.1037 2.9191 34 1 -0.0641 -5.0685 1.0741 35 1 0.9627 -5.5158 2.4575 36 1 2.2491 -5.6326 0.3501 37 1 2.8829 -4.3391 1.3960 38 1 3.3730 -4.3656 -1.5631 39 1 3.8416 -3.0471 -0.4631 40 1 1.9262 -2.0492 -2.2827 41 1 1.4807 -0.8264 -3.5741 42 1 1.0751 0.8285 -5.3492 43 1 2.8915 1.4697 -6.8752 44 1 6.6093 -0.6969 -4.2580 45 1 6.0785 -2.2772 -4.9088 46 1 6.3661 -1.5921 -7.1467 47 1 7.5598 -0.4786 -6.4032 48 1 5.3741 0.4351 -7.8288 49 1 6.0773 1.3493 -6.4606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024821606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:23 Heat of formation + Delta-G solvation = -0.915643 kcal Electronic energy + Delta-G solvation = -29097.619729 eV Core-core repulsion = 25410.152825 eV Total energy + Delta-G solvation = -3687.466904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.27333 -38.72424 -37.55126 -35.55705 -34.10255 -33.07045 -31.60667 -30.50862 -29.92032 -28.85445 -27.33590 -25.93353 -24.82792 -23.14067 -22.15200 -21.26536 -20.94865 -20.40257 -19.60014 -19.04998 -17.17277 -16.23776 -15.90654 -15.60436 -15.53937 -15.11663 -14.69338 -14.30221 -14.17126 -13.99880 -13.71398 -13.42556 -13.03227 -12.94233 -12.80281 -12.73445 -12.49876 -12.31150 -12.01834 -11.72427 -11.65758 -11.22706 -11.16415 -11.04752 -11.01391 -10.96985 -10.80527 -10.75117 -10.55548 -10.30049 -10.16064 -10.00839 -9.55649 -9.43688 -9.16733 -8.69288 -8.56252 -8.35612 -8.15290 -6.66840 -5.86456 -3.32480 1.16343 1.54739 3.31062 3.34221 3.40673 3.45282 3.86129 4.18677 4.42965 4.48618 4.67110 5.03827 5.11483 5.18433 5.21881 5.23380 5.30876 5.36361 5.50550 5.60682 5.64409 5.65560 5.68555 5.79328 5.80716 5.90221 5.96431 6.04173 6.07097 6.14856 6.19419 6.25084 6.31032 6.33745 6.35518 6.41505 6.55257 6.58974 6.63926 6.69761 6.72068 6.75033 6.84609 6.97734 7.09433 7.20335 7.35651 7.61697 7.78721 8.29214 8.39197 8.88599 9.14874 9.76094 10.34641 11.20308 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.004282 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.828756 B = 6536.983328 C = 7678.086589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.012 3.988 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.135 3.865 17 N -0.689 5.689 18 C 0.549 3.451 19 O -0.559 6.559 20 C -0.116 4.116 21 C -0.076 4.076 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.038 4.038 26 C -0.078 4.078 27 C -0.123 4.123 28 C -0.078 4.078 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -2.753 -9.559 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.339 5.339 18 C 0.336 3.664 19 O -0.440 6.440 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.147 4.147 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.039 4.039 26 C -0.114 4.114 27 C -0.161 4.161 28 C -0.115 4.115 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.181 -2.969 -9.445 11.174 hybrid contribution -0.253 1.292 0.213 1.334 sum 4.928 -1.676 -9.231 10.598 Atomic orbital electron populations 1.70014 1.05098 1.25504 1.53588 1.25030 0.95118 0.98002 1.00620 0.86526 0.79473 0.84242 0.78129 1.20990 1.21565 1.20516 1.19166 0.92156 0.84063 1.42690 0.91363 1.44065 1.37244 1.02058 1.47821 1.20727 0.88703 0.97356 0.88317 1.22195 1.00023 0.96593 0.99541 1.21361 0.97657 0.97354 0.98114 1.21935 0.98277 0.98226 0.98244 1.20734 0.93357 0.88534 0.92070 0.95103 1.21292 0.98336 0.90656 0.88610 1.45944 1.14504 1.43424 1.30072 1.18222 0.84650 0.81764 0.81759 1.90670 1.23465 1.56284 1.73589 1.19664 0.93957 1.00400 0.97844 1.21433 0.96019 0.95070 0.96908 1.20983 0.99330 0.98547 0.95836 1.20737 0.91848 0.99090 0.99033 1.20544 0.94955 0.98259 0.98140 1.20533 0.95109 0.94977 0.93271 1.21059 0.91040 1.02854 0.96496 1.22356 0.99071 0.97547 0.97081 1.21013 0.92323 0.99100 0.99023 0.93619 0.96354 0.89969 0.93541 0.92827 0.92881 0.93719 0.93037 0.92075 0.92628 0.91513 0.74761 0.84595 0.85401 0.86269 0.90043 0.89345 0.91149 0.90714 0.90976 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 11.31 55.49 0.63 -23.35 16 2 C 0.01 0.30 4.95 -17.43 -0.09 0.22 16 3 Si 0.89 21.27 29.58 -169.99 -5.03 16.24 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.25 6.99 -15.06 -0.11 -6.36 16 8 H 0.07 1.78 5.89 -52.49 -0.31 1.47 16 9 N -0.59 -13.33 2.97 -164.78 -0.49 -13.82 16 10 C 0.17 3.89 5.26 -3.71 -0.02 3.87 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 13 C -0.13 -2.13 5.37 -26.61 -0.14 -2.27 16 14 C 0.16 3.09 3.00 -67.60 -0.20 2.88 16 15 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 16 C 0.14 2.59 4.43 -4.04 -0.02 2.57 16 17 N -0.69 -13.59 3.83 -61.26 -0.23 -13.83 16 18 C 0.55 11.01 7.77 -12.33 -0.10 10.92 16 19 O -0.56 -12.12 14.70 5.32 0.08 -12.04 16 20 C -0.12 -2.11 5.88 -104.92 -0.62 -2.73 16 21 C -0.08 -1.29 9.54 -39.22 -0.37 -1.66 16 22 C -0.13 -1.90 10.03 -39.68 -0.40 -2.30 16 23 C -0.09 -1.20 10.03 -39.43 -0.40 -1.59 16 24 C -0.12 -1.69 6.13 -104.24 -0.64 -2.33 16 25 C -0.04 -0.62 6.03 -103.82 -0.63 -1.25 16 26 C -0.08 -1.13 5.58 -26.86 -0.15 -1.28 16 27 C -0.12 -1.34 7.08 -25.31 -0.18 -1.52 16 28 C -0.08 -0.85 6.77 -26.83 -0.18 -1.03 16 29 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 2.07 6.27 -51.93 -0.33 1.75 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.40 7.38 -51.93 -0.38 1.02 16 40 H 0.41 8.40 5.47 -40.82 -0.22 8.18 16 41 H 0.14 2.37 6.40 -52.49 -0.34 2.04 16 42 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.39 7.19 -51.93 -0.37 1.02 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -28.32 377.53 -11.76 -40.08 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.85 Total: 9.61 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -4.55 Total: -8.58 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.10 Total: -51.00 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.32 -11.76 -40.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024821606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.160 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds