Wall clock time and date at job start Tue Mar 31 2020 14:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39903 * 109.46447 * 2 1 4 4 F 1.39899 * 109.47307 * 240.00282 * 2 1 3 5 5 C 1.52999 * 109.47082 * 119.99328 * 2 1 3 6 6 C 1.50697 * 115.55659 * 295.63223 * 5 2 1 7 7 O 1.21285 * 119.99457 * 92.45163 * 6 5 2 8 8 N 1.34775 * 120.00170 * 272.45459 * 6 5 2 9 9 C 1.47208 * 126.70106 * 354.98653 * 8 6 5 10 10 C 1.53781 * 106.37735 * 148.71877 * 9 8 6 11 11 H 1.08996 * 112.38924 * 256.84406 * 10 9 8 12 12 C 1.54424 * 109.06121 * 132.43740 * 10 9 8 13 13 C 1.55052 * 103.89290 * 222.03799 * 12 10 9 14 14 C 1.55051 * 102.14224 * 40.05494 * 13 12 10 15 15 H 1.09003 * 110.53743 * 78.53544 * 14 13 12 16 16 N 1.46500 * 110.53535 * 201.31361 * 14 13 12 17 17 C 1.36941 * 120.00021 * 273.54292 * 16 14 13 18 18 H 1.07999 * 119.99551 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99876 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00267 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47335 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47326 * 119.99772 * 21 19 17 24 24 H 1.48508 * 109.47406 * 239.99903 * 21 19 17 25 25 C 1.54329 * 103.93766 * 319.92177 * 14 13 12 26 26 H 1.09001 * 111.69139 * 262.79618 * 25 14 13 27 27 C 1.47210 * 126.70028 * 174.98721 * 8 6 5 28 28 C 1.53000 * 117.51480 * 81.34077 * 5 2 1 29 29 C 1.52993 * 60.00199 * 107.47503 * 28 5 2 30 30 H 1.08999 * 109.47559 * 305.35380 * 1 2 3 31 31 H 1.08993 * 109.47161 * 65.36367 * 1 2 3 32 32 H 1.09008 * 109.46342 * 185.35719 * 1 2 3 33 33 H 1.09001 * 110.07396 * 29.49452 * 9 8 6 34 34 H 1.08994 * 110.07963 * 267.94749 * 9 8 6 35 35 H 1.09000 * 110.57299 * 103.42690 * 12 10 9 36 36 H 1.09004 * 110.53381 * 340.62607 * 12 10 9 37 37 H 1.08995 * 110.90687 * 281.83079 * 13 12 10 38 38 H 1.09003 * 110.89864 * 158.27028 * 13 12 10 39 39 H 0.97003 * 120.00553 * 93.54536 * 16 14 13 40 40 H 0.97009 * 120.00310 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.07145 * 92.05336 * 27 8 6 42 42 H 1.08995 * 110.07504 * 330.51442 * 27 8 6 43 43 H 1.08995 * 117.50119 * 214.97021 * 28 5 2 44 44 H 1.09005 * 117.50041 * 359.97438 * 28 5 2 45 45 H 1.09002 * 117.50145 * 252.50714 * 29 28 5 46 46 H 1.08999 * 117.49755 * 107.48916 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7211 1.2493 6 6 1.7022 -0.0639 2.5627 7 8 0.6956 -0.3832 3.1593 8 7 2.5185 0.8786 3.0743 9 6 3.8198 1.3035 2.5328 10 6 3.9743 2.7907 2.8924 11 1 3.7877 3.4452 2.0411 12 6 5.3785 3.0212 3.4922 13 6 5.1213 3.9778 4.6851 14 6 3.8074 3.4099 5.2811 15 1 4.0118 2.5240 5.8824 16 7 3.1234 4.4290 6.0811 17 6 3.4480 4.5950 7.4010 18 1 4.2079 3.9744 7.8524 19 6 2.7996 5.5601 8.1592 20 7 1.8732 6.3161 7.6092 21 14 3.2429 5.7870 9.9595 22 1 4.3070 4.8208 10.3329 23 1 3.7323 7.1719 10.1781 24 1 2.0414 5.5483 10.7991 25 6 2.9660 3.0404 4.0412 26 1 2.2528 3.8254 3.7898 27 6 2.2830 1.6842 4.2837 28 6 2.0830 -2.2501 1.2149 29 6 3.3832 -1.4466 1.1473 30 1 -0.3634 0.5946 0.8381 31 1 -0.3633 0.4284 -0.9341 32 1 -0.3632 -1.0233 0.0960 33 1 3.8339 1.1770 1.4502 34 1 4.6221 0.7232 2.9883 35 1 6.0354 3.4909 2.7601 36 1 5.8043 2.0804 3.8414 37 1 4.9808 5.0018 4.3392 38 1 5.9333 3.9221 5.4102 39 1 2.4406 4.9862 5.6758 40 1 1.4202 6.9909 8.1389 41 1 2.7233 1.1934 5.1517 42 1 1.2132 1.8260 4.4362 43 1 1.8668 -2.7807 2.1421 44 1 1.7475 -2.7426 0.3021 45 1 3.9033 -1.4105 0.1900 46 1 4.0225 -1.4486 2.0301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:38 Heat of formation + Delta-G solvation = -96.087733 kcal Electronic energy + Delta-G solvation = -29662.593708 eV Core-core repulsion = 25416.770303 eV Total energy + Delta-G solvation = -4245.823405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31303 -47.29691 -40.62591 -38.97061 -36.79797 -35.24413 -33.37930 -31.56688 -31.03891 -29.65685 -28.46876 -25.78739 -25.00672 -23.88391 -22.96226 -22.87723 -21.80452 -20.23049 -19.19117 -19.08228 -17.96624 -17.67137 -17.05707 -16.66692 -16.36908 -15.86084 -15.51409 -15.03379 -14.61431 -14.27714 -14.17199 -14.09964 -13.75373 -13.58632 -13.39042 -13.16902 -13.04468 -12.82463 -12.71643 -12.58508 -12.39097 -12.08577 -11.96765 -11.87400 -11.66543 -11.18841 -11.03310 -10.86335 -10.81430 -10.79219 -10.63180 -10.37543 -10.31316 -10.20105 -9.95642 -9.85958 -9.67204 -8.89298 -8.69730 -6.96046 -5.78158 -3.06999 2.26468 2.69907 3.05683 3.36142 3.42540 3.48303 3.50453 3.76475 3.97358 4.13485 4.19295 4.52184 4.55414 4.60388 4.63129 4.77841 4.89003 5.08363 5.16087 5.22382 5.29786 5.36978 5.41050 5.43738 5.47447 5.54298 5.60304 5.62107 5.62910 5.76181 5.85158 5.94083 5.95750 6.06170 6.16491 6.23542 6.30622 6.39597 6.52650 6.64769 6.77774 7.02869 7.47444 7.69722 8.00247 8.40284 9.51640 10.08880 10.42912 11.44433 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.003007 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.514144 B = 9310.081569 C = 9619.455677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.336 3.664 3 F -0.190 7.190 4 F -0.194 7.194 5 C -0.214 4.214 6 C 0.571 3.429 7 O -0.528 6.528 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.099 4.099 11 H 0.087 0.913 12 C -0.117 4.117 13 C -0.142 4.142 14 C 0.185 3.815 15 H 0.055 0.945 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.105 4.105 26 H 0.090 0.910 27 C 0.116 3.884 28 C -0.124 4.124 29 C -0.150 4.150 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -15.700 -18.355 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.299 3.701 3 F -0.170 7.170 4 F -0.175 7.175 5 C -0.218 4.218 6 C 0.358 3.642 7 O -0.405 6.405 8 N -0.336 5.336 9 C -0.019 4.019 10 C -0.118 4.118 11 H 0.105 0.895 12 C -0.155 4.155 13 C -0.183 4.183 14 C 0.074 3.926 15 H 0.073 0.927 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.125 4.125 26 H 0.109 0.891 27 C -0.005 4.005 28 C -0.162 4.162 29 C -0.187 4.187 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.864 -15.928 -17.886 24.121 hybrid contribution 0.152 0.617 0.712 0.954 sum 3.015 -15.311 -17.174 23.205 Atomic orbital electron populations 1.22718 0.90442 1.06063 1.05456 1.19987 0.93928 0.75103 0.81035 1.93053 1.90482 1.36857 1.96642 1.93002 1.90669 1.81069 1.52759 1.22313 1.07210 0.97848 0.94429 1.18471 0.82561 0.78904 0.84303 1.90736 1.26328 1.62386 1.61013 1.48534 1.20397 1.36952 1.27720 1.22395 0.84596 0.95412 0.99452 1.22568 0.96367 0.94498 0.98392 0.89463 1.22524 0.94695 1.00088 0.98187 1.23293 1.00204 0.98834 0.95987 1.21236 0.89889 0.92360 0.89152 0.92686 1.42449 1.45267 1.39947 1.08441 1.19264 1.16677 1.14663 0.86410 0.91145 1.24734 0.98961 0.98945 0.98221 1.69668 1.28094 1.24655 1.35578 0.86147 0.77489 0.77440 0.85280 1.20566 1.21900 1.21884 1.22894 0.97368 0.96092 0.96160 0.89132 1.22231 1.02021 0.90134 0.86144 1.23074 0.99500 0.88458 1.05135 1.23237 0.89772 1.00575 1.05077 0.88885 0.89768 0.88910 0.90536 0.91120 0.92121 0.91753 0.91486 0.92145 0.78166 0.93547 0.90759 0.90278 0.86981 0.86949 0.86888 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 9.17 37.16 0.34 -1.42 16 2 C 0.34 3.53 2.08 -26.73 -0.06 3.47 16 3 F -0.19 -2.32 15.58 2.25 0.04 -2.29 16 4 F -0.19 -1.95 15.64 2.25 0.04 -1.91 16 5 C -0.21 -2.25 0.90 -155.66 -0.14 -2.39 16 6 C 0.57 7.98 6.30 -10.99 -0.07 7.91 16 7 O -0.53 -9.10 17.35 5.55 0.10 -9.00 16 8 N -0.60 -8.26 3.32 -171.60 -0.57 -8.83 16 9 C 0.10 1.19 5.52 -3.25 -0.02 1.17 16 10 C -0.10 -1.26 3.91 -88.47 -0.35 -1.60 16 11 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.12 -1.45 6.36 -24.90 -0.16 -1.61 16 13 C -0.14 -2.35 6.59 -24.56 -0.16 -2.51 16 14 C 0.18 3.44 3.01 -66.15 -0.20 3.24 16 15 H 0.06 1.05 7.16 -51.93 -0.37 0.68 16 16 N -0.72 -17.41 5.23 -51.70 -0.27 -17.68 16 17 C -0.24 -6.47 9.98 -15.06 -0.15 -6.62 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 C -0.11 -1.66 3.60 -88.53 -0.32 -1.98 16 26 H 0.09 1.55 7.78 -51.93 -0.40 1.15 16 27 C 0.12 1.82 6.52 -3.25 -0.02 1.80 16 28 C -0.12 -1.02 9.67 -26.73 -0.26 -1.27 16 29 C -0.15 -1.20 8.32 -26.73 -0.22 -1.42 16 30 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.08 0.81 5.70 -51.93 -0.30 0.51 16 34 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.73 7.19 -51.93 -0.37 0.35 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.38 9.94 7.57 -40.82 -0.31 9.63 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.19 7.13 -51.93 -0.37 0.82 16 42 H 0.08 1.37 7.98 -51.93 -0.41 0.95 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.11 0.74 7.91 -51.93 -0.41 0.33 16 45 H 0.11 0.79 7.65 -51.93 -0.40 0.39 16 46 H 0.11 0.84 7.93 -51.93 -0.41 0.42 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -31.29 370.60 -8.30 -39.59 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.04 Total: 8.15 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.87 Total: -3.68 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.12 Total: -53.64 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.10 Total: -9.00 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.29 -8.30 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.498 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds