Wall clock time and date at job start Tue Mar 31 2020 14:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39901 * 109.47279 * 2 1 4 4 F 1.39900 * 109.47417 * 240.00191 * 2 1 3 5 5 C 1.53000 * 109.47059 * 120.00292 * 2 1 3 6 6 C 1.50699 * 115.55041 * 294.19306 * 5 2 1 7 7 O 1.21287 * 119.99744 * 102.17712 * 6 5 2 8 8 N 1.34778 * 120.00182 * 282.17740 * 6 5 2 9 9 C 1.49205 * 126.06040 * 354.53169 * 8 6 5 10 10 C 1.50348 * 104.86333 * 172.93333 * 9 8 6 11 11 H 1.08998 * 109.74214 * 279.04664 * 10 9 8 12 12 C 1.51006 * 125.53561 * 144.29427 * 10 9 8 13 13 C 1.56405 * 101.59600 * 204.00648 * 12 10 9 14 14 C 1.55943 * 105.85436 * 24.97975 * 13 12 10 15 15 H 1.08996 * 110.49485 * 126.25449 * 14 13 12 16 16 N 1.46497 * 110.49171 * 248.91587 * 14 13 12 17 17 C 1.36937 * 120.00261 * 273.54674 * 16 14 13 18 18 H 1.08000 * 119.99611 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00504 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47116 * 60.00241 * 21 19 17 23 23 H 1.48505 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46946 * 300.00060 * 21 19 17 25 25 C 1.50476 * 104.06366 * 7.58828 * 14 13 12 26 26 H 1.09004 * 109.50596 * 80.24102 * 25 14 13 27 27 C 1.49695 * 126.05719 * 174.52601 * 8 6 5 28 28 C 1.53000 * 117.49844 * 79.86655 * 5 2 1 29 29 C 1.53008 * 117.49738 * 148.52799 * 5 2 1 30 30 H 1.08998 * 109.47303 * 303.10290 * 1 2 3 31 31 H 1.09002 * 109.47123 * 63.10499 * 1 2 3 32 32 H 1.09001 * 109.47134 * 183.10501 * 1 2 3 33 33 H 1.09006 * 110.36471 * 54.08279 * 9 8 6 34 34 H 1.09005 * 110.36244 * 291.78058 * 9 8 6 35 35 H 1.08998 * 111.00388 * 85.92863 * 12 10 9 36 36 H 1.08999 * 111.00478 * 322.08650 * 12 10 9 37 37 H 1.09004 * 110.18186 * 144.09505 * 13 12 10 38 38 H 1.08995 * 110.18575 * 265.85981 * 13 12 10 39 39 H 0.97001 * 120.00122 * 93.54086 * 16 14 13 40 40 H 0.97002 * 119.99874 * 180.02562 * 20 19 17 41 41 H 1.09007 * 110.84472 * 36.67264 * 27 8 6 42 42 H 1.09000 * 111.02429 * 273.14043 * 27 8 6 43 43 H 1.08996 * 117.49692 * 214.99764 * 28 5 2 44 44 H 1.08997 * 117.50205 * 0.02650 * 28 5 2 45 45 H 1.08999 * 117.49566 * 359.97313 * 29 5 2 46 46 H 1.08999 * 117.49682 * 144.97705 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 1.7312 -0.0466 2.5609 7 8 0.8276 -0.4588 3.2569 8 7 2.4593 1.0149 2.9605 9 6 3.6657 1.5613 2.2732 10 6 3.9879 2.8310 3.0111 11 1 3.3449 3.6364 2.6564 12 6 5.3760 3.3589 3.2847 13 6 5.1290 4.2560 4.5420 14 6 3.8563 3.6787 5.2338 15 1 4.0581 3.4593 6.2822 16 7 2.7364 4.6151 5.1108 17 6 2.5749 5.6144 6.0330 18 1 3.2730 5.7120 6.8512 19 6 1.5141 6.5020 5.9162 20 7 0.6630 6.3828 4.9192 21 14 1.2935 7.8647 7.1746 22 1 2.4941 8.7386 7.1735 23 1 0.0946 8.6695 6.8277 24 1 1.1160 7.2691 8.5233 25 6 3.5706 2.4112 4.4748 26 1 4.2248 1.6166 4.8339 27 6 2.2010 1.8546 4.1725 28 6 2.0503 -2.2511 1.2269 29 6 3.3668 -1.4751 1.1375 30 1 -0.3634 0.5612 0.8608 31 1 -0.3633 0.4649 -0.9165 32 1 -0.3633 -1.0262 0.0557 33 1 3.4421 1.7763 1.2282 34 1 4.4955 0.8584 2.3474 35 1 5.7403 3.9529 2.4466 36 1 6.0650 2.5461 3.5141 37 1 5.9826 4.1998 5.2175 38 1 4.9569 5.2887 4.2391 39 1 2.1092 4.5273 4.3760 40 1 -0.0781 7.0032 4.8374 41 1 1.8401 1.2422 4.9989 42 1 1.4969 2.6563 3.9499 43 1 1.8338 -2.7695 2.1609 44 1 1.6942 -2.7437 0.3221 45 1 3.8760 -1.4574 0.1740 46 1 4.0164 -1.4826 2.0127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:41 Heat of formation + Delta-G solvation = -75.055529 kcal Electronic energy + Delta-G solvation = -30007.167410 eV Core-core repulsion = 25762.256030 eV Total energy + Delta-G solvation = -4244.911380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.25326 -47.24567 -40.63036 -39.18083 -36.66837 -35.21103 -33.30439 -31.49134 -30.85006 -29.56610 -28.48073 -25.76525 -25.12244 -23.56869 -23.23472 -22.83930 -21.71312 -19.93412 -19.03430 -18.92117 -17.80770 -17.58131 -17.41859 -16.50597 -16.07711 -16.05862 -15.05565 -14.97345 -14.48128 -14.33672 -14.30591 -13.97404 -13.77181 -13.57606 -13.45755 -13.32125 -12.89915 -12.72369 -12.61087 -12.45890 -12.24458 -12.00630 -11.85907 -11.79623 -11.51520 -11.18620 -11.00422 -10.91654 -10.79801 -10.67358 -10.57940 -10.47027 -10.23735 -10.11245 -9.83684 -9.60696 -9.55215 -8.91303 -8.52359 -6.97670 -5.77752 -3.06846 2.38543 2.76758 3.13530 3.43272 3.43716 3.48568 3.49316 3.84414 4.02044 4.15490 4.24760 4.38903 4.58719 4.63282 4.71761 4.97390 5.10359 5.21964 5.24514 5.30739 5.34496 5.43525 5.49109 5.52559 5.54778 5.63576 5.68491 5.70708 5.71378 5.80437 5.84759 5.95149 6.02264 6.13563 6.27259 6.28567 6.39248 6.45321 6.54065 6.67178 6.82610 7.06007 7.55324 7.69985 8.11633 8.40701 9.51967 10.08308 10.42871 11.44616 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.003474 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.354532 B = 8057.676172 C = 8567.556065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.335 3.665 3 F -0.186 7.186 4 F -0.195 7.195 5 C -0.213 4.213 6 C 0.570 3.430 7 O -0.532 6.532 8 N -0.610 5.610 9 C 0.110 3.890 10 C -0.126 4.126 11 H 0.090 0.910 12 C -0.094 4.094 13 C -0.145 4.145 14 C 0.195 3.805 15 H 0.054 0.946 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.121 4.121 26 H 0.074 0.926 27 C 0.130 3.870 28 C -0.125 4.125 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -16.406 -11.085 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.298 3.702 3 F -0.167 7.167 4 F -0.176 7.176 5 C -0.217 4.217 6 C 0.356 3.644 7 O -0.409 6.409 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.145 4.145 11 H 0.108 0.892 12 C -0.133 4.133 13 C -0.186 4.186 14 C 0.083 3.917 15 H 0.072 0.928 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.141 4.141 26 H 0.093 0.907 27 C 0.010 3.990 28 C -0.162 4.162 29 C -0.184 4.184 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.312 -16.539 -10.615 20.641 hybrid contribution -0.192 0.991 0.231 1.036 sum 6.120 -15.548 -10.383 19.672 Atomic orbital electron populations 1.22720 0.90486 1.05883 1.05658 1.20041 0.93917 0.75097 0.81097 1.92987 1.90199 1.36998 1.96499 1.92998 1.90664 1.81059 1.52841 1.22345 1.07541 0.97323 0.94476 1.18444 0.81592 0.79357 0.85043 1.90726 1.31018 1.63822 1.55317 1.49736 1.28760 1.28799 1.27038 1.21577 0.86829 0.95088 0.97682 1.22214 0.99502 0.96784 0.96022 0.89175 1.21694 0.94091 0.98857 0.98616 1.23856 0.98879 1.00448 0.95412 1.20174 0.88501 0.86925 0.96068 0.92794 1.42427 1.28658 1.32898 1.31992 1.19191 1.08398 1.05320 1.04337 0.91179 1.24723 0.97879 0.99672 0.98411 1.69643 1.16954 1.39500 1.31934 0.86292 0.77056 0.82013 0.80948 1.21317 1.21758 1.21289 1.22472 0.96067 0.98826 0.96696 0.90735 1.21502 0.97472 0.93843 0.86176 1.23070 0.99366 0.88713 1.05054 1.23190 0.89874 1.00459 1.04888 0.88875 0.89679 0.88973 0.89524 0.91764 0.92021 0.92140 0.92905 0.90510 0.78120 0.93438 0.90370 0.89483 0.86917 0.87072 0.86943 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 9.22 37.15 0.34 -1.63 16 2 C 0.34 3.87 2.08 -26.73 -0.06 3.81 16 3 F -0.19 -2.51 13.87 2.25 0.03 -2.48 16 4 F -0.19 -2.13 15.65 2.25 0.04 -2.09 16 5 C -0.21 -2.45 1.07 -155.66 -0.17 -2.62 16 6 C 0.57 8.62 6.33 -10.99 -0.07 8.55 16 7 O -0.53 -9.75 17.28 5.55 0.10 -9.65 16 8 N -0.61 -9.19 3.41 -171.57 -0.59 -9.78 16 9 C 0.11 1.43 5.83 -3.86 -0.02 1.41 16 10 C -0.13 -1.84 2.73 -90.27 -0.25 -2.08 16 11 H 0.09 1.57 7.72 -51.93 -0.40 1.17 16 12 C -0.09 -1.26 6.72 -25.90 -0.17 -1.43 16 13 C -0.15 -2.37 6.73 -23.33 -0.16 -2.53 16 14 C 0.19 3.63 3.45 -67.62 -0.23 3.40 16 15 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 16 N -0.72 -17.04 4.86 -53.13 -0.26 -17.30 16 17 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.12 -1.92 2.59 -90.26 -0.23 -2.15 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 C 0.13 2.24 6.55 -3.32 -0.02 2.22 16 28 C -0.12 -1.13 9.60 -26.69 -0.26 -1.38 16 29 C -0.15 -1.31 9.06 -26.68 -0.24 -1.55 16 30 H 0.09 1.13 7.82 -51.93 -0.41 0.72 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.13 5.24 -51.93 -0.27 0.86 16 34 H 0.06 0.71 8.00 -51.93 -0.42 0.30 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 39 H 0.38 9.74 6.14 -40.82 -0.25 9.49 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.39 8.05 -51.92 -0.42 0.97 16 42 H 0.09 1.73 6.88 -51.93 -0.36 1.37 16 43 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.11 0.81 7.95 -51.93 -0.41 0.40 16 45 H 0.11 0.88 7.61 -51.93 -0.40 0.49 16 46 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -30.69 369.20 -8.29 -38.98 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.09 Total: 9.59 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.78 Total: -3.00 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.12 Total: -54.01 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.10 Total: -9.65 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.69 -8.29 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.076 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds