Wall clock time and date at job start Tue Mar 31 2020 14:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 F 1.39901 * 109.47279 * 2 1 4 4 F 1.39900 * 109.47417 * 240.00191 * 2 1 3 5 5 C 1.53000 * 109.47059 * 120.00292 * 2 1 3 6 6 C 1.50699 * 115.55041 * 294.19306 * 5 2 1 7 7 O 1.21287 * 119.99744 * 102.17712 * 6 5 2 8 8 N 1.34778 * 120.00182 * 282.17740 * 6 5 2 9 9 C 1.49205 * 126.06040 * 354.53169 * 8 6 5 10 10 C 1.50348 * 104.86333 * 172.93333 * 9 8 6 11 11 H 1.08998 * 109.74214 * 279.04664 * 10 9 8 12 12 C 1.51006 * 125.53561 * 144.29427 * 10 9 8 13 13 C 1.56405 * 101.59600 * 204.00648 * 12 10 9 14 14 C 1.55943 * 105.85436 * 24.97975 * 13 12 10 15 15 H 1.08996 * 110.49485 * 126.25449 * 14 13 12 16 16 N 1.46497 * 110.49171 * 248.91587 * 14 13 12 17 17 C 1.36937 * 120.00261 * 273.54674 * 16 14 13 18 18 H 1.08000 * 119.99611 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00504 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00216 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47116 * 60.00241 * 21 19 17 23 23 H 1.48505 * 109.47048 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46946 * 300.00060 * 21 19 17 25 25 C 1.50476 * 104.06366 * 7.58828 * 14 13 12 26 26 H 1.09004 * 109.50596 * 80.24102 * 25 14 13 27 27 C 1.49695 * 126.05719 * 174.52601 * 8 6 5 28 28 C 1.53000 * 117.49844 * 79.86655 * 5 2 1 29 29 C 1.53008 * 117.49738 * 148.52799 * 5 2 1 30 30 H 1.08998 * 109.47303 * 303.10290 * 1 2 3 31 31 H 1.09002 * 109.47123 * 63.10499 * 1 2 3 32 32 H 1.09001 * 109.47134 * 183.10501 * 1 2 3 33 33 H 1.09006 * 110.36471 * 54.08279 * 9 8 6 34 34 H 1.09005 * 110.36244 * 291.78058 * 9 8 6 35 35 H 1.08998 * 111.00388 * 85.92863 * 12 10 9 36 36 H 1.08999 * 111.00478 * 322.08650 * 12 10 9 37 37 H 1.09004 * 110.18186 * 144.09505 * 13 12 10 38 38 H 1.08995 * 110.18575 * 265.85981 * 13 12 10 39 39 H 0.97001 * 120.00122 * 93.54086 * 16 14 13 40 40 H 0.97002 * 119.99874 * 180.02562 * 20 19 17 41 41 H 1.09007 * 110.84472 * 36.67264 * 27 8 6 42 42 H 1.09000 * 111.02429 * 273.14043 * 27 8 6 43 43 H 1.08996 * 117.49692 * 214.99764 * 28 5 2 44 44 H 1.08997 * 117.50205 * 0.02650 * 28 5 2 45 45 H 1.08999 * 117.49566 * 359.97313 * 29 5 2 46 46 H 1.08999 * 117.49682 * 144.97705 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0399 -0.7213 1.2492 6 6 1.7312 -0.0466 2.5609 7 8 0.8276 -0.4588 3.2569 8 7 2.4593 1.0149 2.9605 9 6 3.6657 1.5613 2.2732 10 6 3.9879 2.8310 3.0111 11 1 3.3449 3.6364 2.6564 12 6 5.3760 3.3589 3.2847 13 6 5.1290 4.2560 4.5420 14 6 3.8563 3.6787 5.2338 15 1 4.0581 3.4593 6.2822 16 7 2.7364 4.6151 5.1108 17 6 2.5749 5.6144 6.0330 18 1 3.2730 5.7120 6.8512 19 6 1.5141 6.5020 5.9162 20 7 0.6630 6.3828 4.9192 21 14 1.2935 7.8647 7.1746 22 1 2.4941 8.7386 7.1735 23 1 0.0946 8.6695 6.8277 24 1 1.1160 7.2691 8.5233 25 6 3.5706 2.4112 4.4748 26 1 4.2248 1.6166 4.8339 27 6 2.2010 1.8546 4.1725 28 6 2.0503 -2.2511 1.2269 29 6 3.3668 -1.4751 1.1375 30 1 -0.3634 0.5612 0.8608 31 1 -0.3633 0.4649 -0.9165 32 1 -0.3633 -1.0262 0.0557 33 1 3.4421 1.7763 1.2282 34 1 4.4955 0.8584 2.3474 35 1 5.7403 3.9529 2.4466 36 1 6.0650 2.5461 3.5141 37 1 5.9826 4.1998 5.2175 38 1 4.9569 5.2887 4.2391 39 1 2.1092 4.5273 4.3760 40 1 -0.0781 7.0032 4.8374 41 1 1.8401 1.2422 4.9989 42 1 1.4969 2.6563 3.9499 43 1 1.8338 -2.7695 2.1609 44 1 1.6942 -2.7437 0.3221 45 1 3.8760 -1.4574 0.1740 46 1 4.0164 -1.4826 2.0127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026361272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:40 Heat of formation + Delta-G solvation = -92.911784 kcal Electronic energy + Delta-G solvation = -30007.941716 eV Core-core repulsion = 25762.256030 eV Total energy + Delta-G solvation = -4245.685686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.16895 -48.16934 -41.86014 -40.35414 -37.63862 -36.70182 -35.04340 -32.60840 -32.31596 -30.90452 -29.92772 -27.16999 -26.18262 -25.17733 -24.62689 -23.54907 -22.80130 -21.13026 -20.35906 -20.05916 -19.42293 -18.86565 -18.44278 -17.48729 -17.36283 -17.13016 -16.70368 -16.05010 -15.87235 -15.74232 -15.45045 -15.18080 -14.92241 -14.81946 -14.71738 -14.41995 -14.19656 -13.75109 -13.70554 -13.55468 -13.32106 -13.23001 -13.14698 -12.92794 -12.78188 -12.62901 -12.52919 -12.36651 -12.24901 -12.02817 -11.89467 -11.67652 -11.51565 -11.46412 -11.40787 -11.04600 -10.89946 -10.83925 -9.78314 -8.96855 -7.92269 -5.19761 1.25107 1.47128 1.49580 1.55429 1.65296 2.33483 2.54525 2.57496 2.90426 2.99700 3.16519 3.37256 3.41870 3.46852 3.74939 3.81620 3.85191 3.92400 4.02234 4.20896 4.30680 4.39769 4.42939 4.49344 4.53110 4.57882 4.59081 4.61146 4.70136 4.72472 4.82394 4.84891 4.88120 4.91975 5.02318 5.03468 5.06151 5.19837 5.21976 5.37814 5.44757 5.54317 5.68454 6.30001 6.38053 6.92428 7.36139 8.13625 8.35413 9.31085 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.003474 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.354532 B = 8057.676172 C = 8567.556065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.335 3.665 3 F -0.201 7.201 4 F -0.187 7.187 5 C -0.232 4.232 6 C 0.567 3.433 7 O -0.573 6.573 8 N -0.610 5.610 9 C 0.116 3.884 10 C -0.113 4.113 11 H 0.052 0.948 12 C -0.080 4.080 13 C -0.138 4.138 14 C 0.182 3.818 15 H 0.050 0.950 16 N -0.730 5.730 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.969 3.031 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.280 1.280 25 C -0.117 4.117 26 H 0.103 0.897 27 C 0.133 3.867 28 C -0.114 4.114 29 C -0.128 4.128 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.636 -18.337 -11.907 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.299 3.701 3 F -0.182 7.182 4 F -0.168 7.168 5 C -0.236 4.236 6 C 0.355 3.645 7 O -0.453 6.453 8 N -0.343 5.343 9 C -0.005 4.005 10 C -0.132 4.132 11 H 0.070 0.930 12 C -0.118 4.118 13 C -0.179 4.179 14 C 0.073 3.927 15 H 0.068 0.932 16 N -0.371 5.371 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.623 5.623 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.226 1.226 24 H -0.206 1.206 25 C -0.137 4.137 26 H 0.122 0.878 27 C 0.012 3.988 28 C -0.151 4.151 29 C -0.165 4.165 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.164 -18.492 -11.438 23.596 hybrid contribution -1.046 1.532 0.507 1.923 sum 8.118 -16.960 -10.930 21.749 Atomic orbital electron populations 1.22738 0.90156 1.06750 1.05156 1.20079 0.94230 0.74458 0.81362 1.92958 1.90391 1.38241 1.96592 1.93008 1.90606 1.80793 1.52352 1.22189 1.10815 0.98511 0.92087 1.19075 0.80610 0.78911 0.85928 1.90697 1.32590 1.65047 1.56939 1.49798 1.29549 1.28570 1.26368 1.21666 0.86810 0.94829 0.97154 1.22137 0.99788 0.96418 0.94897 0.92987 1.21658 0.93599 0.99275 0.97263 1.23656 0.97961 0.99101 0.97173 1.20486 0.88128 0.87351 0.96723 0.93162 1.42603 1.30064 1.33321 1.31086 1.19606 1.07616 1.05194 1.04329 0.90490 1.25488 0.98285 1.02451 1.00531 1.69816 1.17739 1.40586 1.34116 0.85280 0.76707 0.79359 0.78838 1.20328 1.22638 1.20615 1.22339 0.95623 0.98252 0.97440 0.87839 1.21214 0.97633 0.93005 0.86979 1.23220 0.99308 0.86714 1.05854 1.23373 0.89118 0.97859 1.06171 0.91376 0.88395 0.87242 0.89319 0.88189 0.90793 0.88517 0.90652 0.93701 0.79559 0.94296 0.91661 0.93416 0.87367 0.84979 0.85168 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.86 9.22 71.98 0.66 -3.19 16 2 C 0.34 7.24 2.08 30.59 0.06 7.30 16 3 F -0.20 -5.27 13.87 44.97 0.62 -4.64 16 4 F -0.19 -3.56 15.65 44.97 0.70 -2.86 16 5 C -0.23 -4.92 1.07 -52.93 -0.06 -4.97 16 6 C 0.57 17.01 6.33 87.66 0.55 17.57 16 7 O -0.57 -21.55 17.28 -3.05 -0.05 -21.61 16 8 N -0.61 -18.22 3.41 -815.10 -2.78 -21.00 16 9 C 0.12 2.77 5.83 85.00 0.50 3.26 16 10 C -0.11 -3.15 2.73 -10.56 -0.03 -3.18 16 11 H 0.05 1.86 7.72 -2.39 -0.02 1.84 16 12 C -0.08 -1.87 6.72 31.13 0.21 -1.67 16 13 C -0.14 -4.31 6.73 32.80 0.22 -4.09 16 14 C 0.18 6.78 3.45 45.19 0.16 6.94 16 15 H 0.05 1.89 8.12 -2.39 -0.02 1.87 16 16 N -0.73 -35.92 4.86 -321.99 -1.56 -37.48 16 17 C -0.24 -12.90 9.97 84.03 0.84 -12.06 16 18 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 20 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 21 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 C -0.12 -3.63 2.59 -10.56 -0.03 -3.66 16 26 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 27 C 0.13 4.76 6.55 85.07 0.56 5.32 16 28 C -0.11 -1.74 9.60 30.62 0.29 -1.44 16 29 C -0.13 -1.81 9.06 30.62 0.28 -1.53 16 30 H 0.07 1.73 7.82 -2.39 -0.02 1.71 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.16 5.24 -2.38 -0.01 2.15 16 34 H 0.10 1.74 8.00 -2.38 -0.02 1.72 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.69 7.98 -2.39 -0.02 1.67 16 39 H 0.37 20.02 6.14 -92.71 -0.57 19.45 16 40 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.06 2.45 8.05 -2.38 -0.02 2.43 16 42 H 0.05 2.07 6.88 -2.39 -0.02 2.05 16 43 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.13 1.46 7.95 -2.39 -0.02 1.44 16 45 H 0.13 1.43 7.61 -2.39 -0.02 1.41 16 46 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -70.29 369.20 4.35 -65.95 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.42 Total: 32.31 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.68 Total: 0.72 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -4.06 Total: -118.39 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 1.33 Total: -7.50 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.29 4.35 -65.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.965 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds