Wall clock time and date at job start Tue Mar 31 2020 14:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39892 * 109.47181 * 2 1 4 4 F 1.39905 * 109.46772 * 240.00231 * 2 1 3 5 5 C 1.52999 * 109.46967 * 120.00562 * 2 1 3 6 6 C 1.50696 * 115.54679 * 295.34458 * 5 2 1 7 7 O 1.21287 * 120.00035 * 92.17973 * 6 5 2 8 8 N 1.34780 * 120.00165 * 272.17668 * 6 5 2 9 9 C 1.49218 * 126.05559 * 354.97256 * 8 6 5 10 10 C 1.50361 * 104.85784 * 172.93584 * 9 8 6 11 11 H 1.08995 * 109.73996 * 279.05111 * 10 9 8 12 12 C 1.50998 * 125.53274 * 144.29721 * 10 9 8 13 13 C 1.56403 * 101.59887 * 204.00713 * 12 10 9 14 14 C 1.55950 * 105.78497 * 25.01297 * 13 12 10 15 15 H 1.09001 * 110.49035 * 248.74197 * 14 13 12 16 16 N 1.46503 * 110.48935 * 126.21541 * 14 13 12 17 17 C 1.36935 * 119.99911 * 86.45629 * 16 14 13 18 18 H 1.07996 * 120.00188 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99843 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99806 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99579 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46897 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47501 * 59.99933 * 21 19 17 24 24 H 1.48497 * 109.47063 * 299.99527 * 21 19 17 25 25 C 1.50283 * 104.15236 * 7.54643 * 14 13 12 26 26 H 1.09005 * 109.99022 * 80.47257 * 25 14 13 27 27 C 1.49696 * 126.05958 * 174.97155 * 8 6 5 28 28 C 1.52993 * 117.52141 * 81.04884 * 5 2 1 29 29 C 1.52999 * 117.49709 * 149.68114 * 5 2 1 30 30 H 1.08997 * 109.47224 * 305.09613 * 1 2 3 31 31 H 1.09003 * 109.46793 * 65.09615 * 1 2 3 32 32 H 1.08998 * 109.47195 * 185.08939 * 1 2 3 33 33 H 1.08997 * 110.35704 * 54.09235 * 9 8 6 34 34 H 1.08995 * 110.36251 * 291.77762 * 9 8 6 35 35 H 1.09000 * 111.00783 * 85.92813 * 12 10 9 36 36 H 1.09001 * 111.03706 * 322.09721 * 12 10 9 37 37 H 1.09003 * 110.18508 * 265.93526 * 13 12 10 38 38 H 1.08995 * 110.19015 * 144.09212 * 13 12 10 39 39 H 0.97001 * 120.00046 * 266.45040 * 16 14 13 40 40 H 0.96994 * 120.00350 * 0.02562 * 20 19 17 41 41 H 1.09002 * 110.84366 * 36.67083 * 27 8 6 42 42 H 1.08994 * 111.02397 * 273.13783 * 27 8 6 43 43 H 1.09004 * 117.50013 * 214.97236 * 28 5 2 44 44 H 1.09007 * 117.49772 * 359.97438 * 28 5 2 45 45 H 1.09001 * 117.50112 * 359.96312 * 29 5 2 46 46 H 1.08999 * 117.50074 * 145.00156 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7214 1.2492 6 6 1.7079 -0.0607 2.5622 7 8 0.6988 -0.3713 3.1593 8 7 2.5321 0.8753 3.0732 9 6 3.8530 1.2834 2.5116 10 6 4.2751 2.4657 3.3392 11 1 3.7747 3.3646 2.9792 12 6 5.6923 2.7901 3.7473 13 6 5.4600 3.6576 5.0278 14 6 4.0694 3.2258 5.5862 15 1 3.3448 4.0318 5.4706 16 7 4.1808 2.8359 6.9940 17 6 4.0889 3.7851 7.9767 18 1 3.9348 4.8213 7.7139 19 6 4.1939 3.4156 9.3106 20 7 4.3813 2.1528 9.6308 21 14 4.0679 4.7105 10.6511 22 1 4.2107 4.0629 11.9798 23 1 2.7462 5.3822 10.5679 24 1 5.1462 5.7156 10.4714 25 6 3.6852 2.0437 4.7416 26 1 4.1905 1.1478 5.1025 27 6 2.2848 1.6896 4.3047 28 6 2.0766 -2.2505 1.2171 29 6 3.3800 -1.4524 1.1452 30 1 -0.3633 0.5908 0.8408 31 1 -0.3633 0.4328 -0.9322 32 1 -0.3633 -1.0236 0.0912 33 1 3.7477 1.5709 1.4655 34 1 4.5747 0.4729 2.6123 35 1 6.2001 3.3649 2.9728 36 1 6.2482 1.8832 3.9855 37 1 5.4488 4.7162 4.7679 38 1 6.2391 3.4585 5.7635 39 1 4.3195 1.9053 7.2301 40 1 4.4463 1.4805 8.9348 41 1 1.7790 1.0966 5.0668 42 1 1.7126 2.5874 4.0714 43 1 1.8604 -2.7788 2.1457 44 1 1.7369 -2.7431 0.3059 45 1 3.8980 -1.4200 0.1866 46 1 4.0213 -1.4558 2.0265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:44 Heat of formation + Delta-G solvation = -77.743567 kcal Electronic energy + Delta-G solvation = -29593.685790 eV Core-core repulsion = 25348.657847 eV Total energy + Delta-G solvation = -4245.027942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.35935 -47.34982 -40.79866 -39.26769 -36.81931 -35.50271 -33.68026 -31.60965 -30.91593 -29.73944 -28.43952 -25.72172 -25.10550 -23.73201 -23.09562 -22.90555 -21.79209 -20.28596 -19.35317 -19.21059 -17.93201 -17.64954 -17.23362 -16.67375 -16.50918 -16.22894 -15.24660 -14.98680 -14.82643 -14.49174 -14.11190 -14.06714 -13.87493 -13.63932 -13.59446 -13.42358 -13.33592 -12.89808 -12.82199 -12.63767 -12.41563 -12.18543 -11.95874 -11.85934 -11.55418 -11.44018 -11.16897 -10.97598 -10.78681 -10.72487 -10.66564 -10.49681 -10.16357 -9.99929 -9.95959 -9.85035 -9.16516 -8.93692 -8.74320 -7.06540 -6.11755 -3.12357 2.25326 2.57523 3.01828 3.32005 3.51100 3.54386 3.71808 3.71943 3.87472 4.02315 4.14968 4.23328 4.51698 4.58576 4.63763 4.79848 4.94852 5.06433 5.13674 5.18446 5.19083 5.30302 5.34041 5.39268 5.45183 5.46253 5.56827 5.57202 5.61988 5.65893 5.75757 5.80726 5.86806 5.95703 6.01556 6.08955 6.21339 6.24861 6.37319 6.53454 6.69401 6.95370 7.36533 7.79713 7.95540 8.73608 9.19714 10.06226 10.20668 11.36352 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.002944 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.788453 B = 9508.881077 C = 9917.148857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.337 3.663 3 F -0.191 7.191 4 F -0.194 7.194 5 C -0.214 4.214 6 C 0.571 3.429 7 O -0.529 6.529 8 N -0.612 5.612 9 C 0.119 3.881 10 C -0.127 4.127 11 H 0.083 0.917 12 C -0.097 4.097 13 C -0.142 4.142 14 C 0.202 3.798 15 H 0.055 0.945 16 N -0.732 5.732 17 C -0.332 4.332 18 H 0.065 0.935 19 C -0.044 4.044 20 N -0.943 5.943 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.295 1.295 25 C -0.119 4.119 26 H 0.079 0.921 27 C 0.129 3.871 28 C -0.124 4.124 29 C -0.149 4.149 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.367 0.633 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -5.721 -23.017 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.300 3.700 3 F -0.172 7.172 4 F -0.174 7.174 5 C -0.218 4.218 6 C 0.357 3.643 7 O -0.405 6.405 8 N -0.346 5.346 9 C -0.003 4.003 10 C -0.147 4.147 11 H 0.101 0.899 12 C -0.135 4.135 13 C -0.183 4.183 14 C 0.091 3.909 15 H 0.073 0.927 16 N -0.373 5.373 17 C -0.463 4.463 18 H 0.083 0.917 19 C -0.242 4.242 20 N -0.588 5.588 21 Si 0.910 3.090 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.139 4.139 26 H 0.098 0.902 27 C 0.008 3.992 28 C -0.162 4.162 29 C -0.186 4.186 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.931 -5.443 -21.110 21.996 hybrid contribution 0.210 -0.323 -1.823 1.863 sum -2.722 -5.767 -22.932 23.802 Atomic orbital electron populations 1.22716 0.90450 1.06121 1.05360 1.19989 0.93879 0.75001 0.81094 1.93028 1.90511 1.37031 1.96651 1.93006 1.90669 1.81047 1.52722 1.22314 1.07370 0.97798 0.94348 1.18481 0.82713 0.78660 0.84413 1.90737 1.26343 1.62572 1.60856 1.49744 1.19917 1.37493 1.27433 1.21405 0.84023 0.97053 0.97826 1.22176 0.98914 0.97689 0.95884 0.89885 1.21741 0.93689 1.00198 0.97866 1.23781 1.00715 0.98304 0.95536 1.20018 0.93770 0.92954 0.84137 0.92666 1.42501 1.87794 1.07178 0.99874 1.20033 1.47397 0.90238 0.88664 0.91713 1.25759 1.00294 1.00928 0.97171 1.70883 1.52512 1.00391 1.35021 0.83257 0.75837 0.73810 0.76129 1.21067 1.22251 1.22270 1.22491 0.94931 1.00885 0.95614 0.90240 1.21551 0.97204 0.94876 0.85559 1.23081 0.99504 0.88408 1.05169 1.23247 0.89811 1.00487 1.05092 0.88950 0.89794 0.88851 0.90415 0.91257 0.91977 0.91664 0.92538 0.90828 0.79947 0.93409 0.89801 0.90818 0.86946 0.86934 0.86867 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 9.18 37.16 0.34 -1.34 16 2 C 0.34 3.46 2.08 -26.73 -0.06 3.40 16 3 F -0.19 -2.25 15.36 2.25 0.03 -2.21 16 4 F -0.19 -1.92 15.64 2.25 0.04 -1.88 16 5 C -0.21 -2.28 1.20 -155.67 -0.19 -2.46 16 6 C 0.57 8.03 6.31 -10.99 -0.07 7.96 16 7 O -0.53 -9.15 17.39 5.55 0.10 -9.05 16 8 N -0.61 -8.39 3.43 -171.56 -0.59 -8.98 16 9 C 0.12 1.36 5.67 -3.85 -0.02 1.34 16 10 C -0.13 -1.60 2.77 -90.26 -0.25 -1.85 16 11 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 12 C -0.10 -1.23 6.72 -25.91 -0.17 -1.40 16 13 C -0.14 -2.35 6.74 -23.32 -0.16 -2.50 16 14 C 0.20 3.81 3.40 -67.71 -0.23 3.58 16 15 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 16 N -0.73 -17.68 5.12 -53.21 -0.27 -17.96 16 17 C -0.33 -9.13 9.97 -15.06 -0.15 -9.28 16 18 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 20 N -0.94 -28.94 13.70 55.49 0.76 -28.18 16 21 Si 1.08 25.74 29.92 -169.99 -5.09 20.65 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.12 -1.87 2.40 -90.35 -0.22 -2.09 16 26 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 27 C 0.13 1.99 6.83 -3.31 -0.02 1.97 16 28 C -0.12 -1.06 9.67 -26.73 -0.26 -1.32 16 29 C -0.15 -1.27 8.52 -26.73 -0.23 -1.49 16 30 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 34 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.39 7.98 -51.93 -0.41 0.98 16 39 H 0.37 9.25 6.47 -40.82 -0.26 8.99 16 40 H 0.25 7.69 6.77 -40.82 -0.28 7.42 16 41 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.11 0.77 7.92 -51.92 -0.41 0.36 16 45 H 0.11 0.83 7.65 -51.93 -0.40 0.43 16 46 H 0.11 0.93 7.16 -51.93 -0.37 0.56 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.17 371.20 -8.29 -40.46 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.08 Total: 8.40 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.78 Total: -6.84 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.10 Total: -55.11 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.10 Total: -9.05 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.09 Total: 20.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.17 -8.29 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.284 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds