Wall clock time and date at job start Tue Mar 31 2020 14:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39906 * 109.47125 * 2 1 4 4 F 1.39897 * 109.47508 * 239.99740 * 2 1 3 5 5 C 1.53003 * 109.47028 * 119.99422 * 2 1 3 6 6 C 1.50696 * 115.55075 * 294.51546 * 5 2 1 7 7 O 1.21282 * 120.00112 * 89.82038 * 6 5 2 8 8 N 1.34772 * 119.99875 * 269.54243 * 6 5 2 9 9 C 1.48350 * 128.19528 * 4.54103 * 8 6 5 10 10 C 1.54913 * 104.07360 * 138.26356 * 9 8 6 11 11 H 1.08995 * 112.54730 * 263.89120 * 10 9 8 12 12 C 1.55457 * 109.07239 * 138.46811 * 10 9 8 13 13 C 1.53961 * 106.11490 * 228.94451 * 12 10 9 14 14 C 1.53957 * 104.88677 * 29.98052 * 13 12 10 15 15 H 1.09007 * 110.18947 * 211.26923 * 14 13 12 16 16 N 1.46499 * 110.14380 * 89.58291 * 14 13 12 17 17 C 1.36935 * 119.99973 * 152.75624 * 16 14 13 18 18 H 1.07997 * 120.00231 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99402 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00371 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46734 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47373 * 119.99269 * 21 19 17 24 24 H 1.48500 * 109.47040 * 239.99964 * 21 19 17 25 25 C 1.53563 * 106.03143 * 330.43282 * 14 13 12 26 26 H 1.08997 * 111.66324 * 254.94349 * 25 14 13 27 27 C 1.48360 * 128.19364 * 184.86371 * 8 6 5 28 28 C 1.53002 * 117.51515 * 80.21095 * 5 2 1 29 29 C 1.52997 * 117.49844 * 148.84193 * 5 2 1 30 30 H 1.08999 * 109.47933 * 295.87918 * 1 2 3 31 31 H 1.09007 * 109.46817 * 55.88009 * 1 2 3 32 32 H 1.08999 * 109.46764 * 175.87302 * 1 2 3 33 33 H 1.09004 * 110.46866 * 257.00035 * 9 8 6 34 34 H 1.08996 * 110.47018 * 19.59535 * 9 8 6 35 35 H 1.08993 * 109.75104 * 109.96290 * 12 10 9 36 36 H 1.08997 * 110.50651 * 348.32819 * 12 10 9 37 37 H 1.08994 * 110.35609 * 271.12353 * 13 12 10 38 38 H 1.09005 * 110.44366 * 148.87695 * 13 12 10 39 39 H 0.97006 * 119.99536 * 332.74602 * 16 14 13 40 40 H 0.96999 * 119.99935 * 179.97438 * 20 19 17 41 41 H 1.08997 * 110.46715 * 340.39513 * 27 8 6 42 42 H 1.08996 * 110.47379 * 102.87091 * 27 8 6 43 43 H 1.08994 * 117.50062 * 214.96526 * 28 5 2 44 44 H 1.08999 * 117.49943 * 359.97438 * 28 5 2 45 45 H 1.08995 * 117.49888 * 359.97438 * 29 5 2 46 46 H 1.09008 * 117.49744 * 145.00091 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 1.7247 -0.0501 2.5613 7 8 0.6953 -0.3144 3.1457 8 7 2.5893 0.8394 3.0881 9 6 3.8463 1.3585 2.4953 10 6 3.8235 2.8711 2.8288 11 1 3.4310 3.4738 2.0098 12 6 5.2483 3.3173 3.2618 13 6 5.0690 4.1096 4.5697 14 6 3.8278 3.4920 5.2393 15 1 3.2963 4.2484 5.8168 16 7 4.2236 2.3806 6.1079 17 6 3.4519 2.0485 7.1892 18 1 2.5517 2.6060 7.4020 19 6 3.8267 0.9951 8.0119 20 7 4.9234 0.3153 7.7523 21 14 2.7744 0.5423 9.4875 22 1 1.6041 1.4538 9.5591 23 1 2.3032 -0.8590 9.3482 24 1 3.5796 0.6729 10.7284 25 6 2.9401 2.9794 4.0959 26 1 2.0787 3.6273 3.9338 27 6 2.5126 1.5264 4.4008 28 6 2.0580 -2.2509 1.2246 29 6 3.3703 -1.4687 1.1399 30 1 -0.3635 0.4485 0.9246 31 1 -0.3633 0.5765 -0.8508 32 1 -0.3633 -1.0250 -0.0740 33 1 4.7107 0.8777 2.9534 34 1 3.8508 1.2047 1.4163 35 1 5.6839 3.9556 2.4932 36 1 5.8847 2.4492 3.4332 37 1 4.8982 5.1642 4.3538 38 1 5.9435 3.9910 5.2096 39 1 5.0322 1.8800 5.9169 40 1 5.1854 -0.4205 8.3275 41 1 1.4929 1.5018 4.7849 42 1 3.1983 1.0666 5.1124 43 1 1.8421 -2.7719 2.1573 44 1 1.7062 -2.7438 0.3184 45 1 3.8821 -1.4472 0.1778 46 1 4.0176 -1.4752 2.0169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026361276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:47 Heat of formation + Delta-G solvation = -84.472642 kcal Electronic energy + Delta-G solvation = -30493.336262 eV Core-core repulsion = 26248.016525 eV Total energy + Delta-G solvation = -4245.319737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.15971 -47.14720 -40.23129 -38.78781 -36.47503 -34.92481 -33.41480 -31.39469 -30.87952 -29.24002 -28.17586 -25.61850 -25.05272 -23.76506 -23.16950 -22.64465 -21.57467 -19.83064 -18.84492 -18.49069 -17.64533 -17.49995 -17.30885 -16.44839 -16.04945 -15.58437 -15.30486 -15.00403 -14.39546 -14.35982 -14.00491 -13.72625 -13.67710 -13.42855 -13.31860 -13.21839 -12.69513 -12.63375 -12.58610 -12.42914 -12.25197 -11.90542 -11.74909 -11.61736 -11.26010 -11.00225 -10.86234 -10.74173 -10.68785 -10.50940 -10.43758 -10.25526 -10.19324 -10.04211 -9.89346 -9.65679 -9.51257 -9.01360 -8.20583 -6.96694 -5.85644 -3.15508 2.63934 3.01161 3.34790 3.41063 3.48462 3.49104 3.58293 3.94471 4.19748 4.37115 4.47867 4.54281 4.74227 4.77603 4.86605 5.00991 5.10691 5.26793 5.39039 5.41779 5.49987 5.53727 5.60178 5.66360 5.67115 5.67951 5.76404 5.79791 5.88390 5.95165 6.05971 6.07704 6.12871 6.23553 6.35429 6.44427 6.55883 6.59279 6.68702 6.87283 6.93138 7.31637 7.67480 7.94528 8.33032 8.40316 9.45360 9.99733 10.34646 11.35936 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.004428 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.720359 B = 6322.231304 C = 7359.883563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.336 3.664 3 F -0.191 7.191 4 F -0.196 7.196 5 C -0.213 4.213 6 C 0.571 3.429 7 O -0.538 6.538 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.098 4.098 11 H 0.079 0.921 12 C -0.111 4.111 13 C -0.129 4.129 14 C 0.178 3.822 15 H 0.056 0.944 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.125 4.125 26 H 0.067 0.933 27 C 0.103 3.897 28 C -0.125 4.125 29 C -0.150 4.150 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 0.700 -17.455 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.299 3.701 3 F -0.172 7.172 4 F -0.177 7.177 5 C -0.217 4.217 6 C 0.357 3.643 7 O -0.415 6.415 8 N -0.339 5.339 9 C -0.014 4.014 10 C -0.117 4.117 11 H 0.097 0.903 12 C -0.149 4.149 13 C -0.168 4.168 14 C 0.067 3.933 15 H 0.074 0.926 16 N -0.354 5.354 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.147 4.147 26 H 0.086 0.914 27 C -0.017 4.017 28 C -0.163 4.163 29 C -0.186 4.186 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.157 0.843 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.884 0.490 -17.025 17.275 hybrid contribution -0.203 -0.329 0.543 0.667 sum -3.086 0.162 -16.482 16.769 Atomic orbital electron populations 1.22711 0.90603 1.05701 1.05624 1.20006 0.93827 0.75068 0.81164 1.93033 1.90511 1.37009 1.96667 1.92991 1.90696 1.81078 1.52930 1.22332 1.07336 0.97428 0.94593 1.18336 0.82877 0.78938 0.84167 1.90702 1.25270 1.63408 1.62139 1.49195 1.22626 1.41163 1.20874 1.22748 0.86683 0.93760 0.98212 1.22928 0.96157 0.94675 0.97932 0.90284 1.22419 0.95434 0.99967 0.97095 1.22462 0.99648 0.98502 0.96161 1.20702 0.92342 0.90370 0.89884 0.92619 1.42550 1.28855 1.35174 1.28815 1.19272 1.04197 1.11759 1.02375 0.90954 1.24708 0.97635 0.98630 0.99370 1.69653 1.24527 1.23400 1.40111 0.86184 0.79552 0.78130 0.82766 1.20444 1.21812 1.21868 1.23271 0.98462 0.97042 0.95962 0.91440 1.23346 1.03949 0.91138 0.83270 1.23043 0.99661 0.88642 1.04936 1.23224 0.89955 1.00488 1.04981 0.88663 0.90039 0.89050 0.90624 0.91039 0.92515 0.91417 0.92153 0.91024 0.78080 0.93459 0.91715 0.84318 0.87006 0.87191 0.87132 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 9.31 37.16 0.35 -1.72 16 2 C 0.34 4.20 2.08 -26.73 -0.06 4.15 16 3 F -0.19 -2.66 15.49 2.25 0.03 -2.62 16 4 F -0.20 -2.33 15.65 2.25 0.04 -2.29 16 5 C -0.21 -2.87 0.91 -155.66 -0.14 -3.01 16 6 C 0.57 10.02 6.29 -10.99 -0.07 9.95 16 7 O -0.54 -11.21 16.92 5.56 0.09 -11.11 16 8 N -0.61 -10.61 3.31 -168.58 -0.56 -11.17 16 9 C 0.11 1.61 5.77 -2.01 -0.01 1.59 16 10 C -0.10 -1.40 4.06 -87.33 -0.35 -1.76 16 11 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.11 -1.49 6.41 -24.92 -0.16 -1.65 16 13 C -0.13 -1.94 6.41 -25.73 -0.17 -2.10 16 14 C 0.18 3.24 3.48 -67.14 -0.23 3.01 16 15 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 16 N -0.71 -16.02 3.31 -52.66 -0.17 -16.19 16 17 C -0.25 -6.30 8.31 -15.06 -0.13 -6.42 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 21 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 C -0.12 -2.12 3.88 -88.57 -0.34 -2.47 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 C 0.10 2.05 5.85 -2.23 -0.01 2.04 16 28 C -0.13 -1.42 9.69 -26.73 -0.26 -1.68 16 29 C -0.15 -1.71 8.50 -26.73 -0.23 -1.94 16 30 H 0.09 1.22 7.23 -51.93 -0.38 0.84 16 31 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.13 7.25 -51.93 -0.38 0.76 16 34 H 0.07 0.96 5.78 -51.93 -0.30 0.66 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.94 7.20 -51.93 -0.37 0.57 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.38 9.24 7.85 -40.82 -0.32 8.92 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.41 7.85 -51.93 -0.41 1.00 16 42 H 0.14 3.23 5.00 -51.93 -0.26 2.97 16 43 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.11 1.01 7.94 -51.93 -0.41 0.60 16 45 H 0.11 1.09 7.62 -51.93 -0.40 0.70 16 46 H 0.11 1.35 8.10 -51.92 -0.42 0.93 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -29.42 366.19 -8.24 -37.66 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.99 Total: 11.34 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.91 Total: -2.29 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.01 Total: -53.14 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.07 Total: -4.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.42 -8.24 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.811 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds