Wall clock time and date at job start Tue Mar 31 2020 14:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39906 * 109.47125 * 2 1 4 4 F 1.39897 * 109.47508 * 239.99740 * 2 1 3 5 5 C 1.53003 * 109.47028 * 119.99422 * 2 1 3 6 6 C 1.50696 * 115.55075 * 294.51546 * 5 2 1 7 7 O 1.21282 * 120.00112 * 89.82038 * 6 5 2 8 8 N 1.34772 * 119.99875 * 269.54243 * 6 5 2 9 9 C 1.48350 * 128.19528 * 4.54103 * 8 6 5 10 10 C 1.54913 * 104.07360 * 138.26356 * 9 8 6 11 11 H 1.08995 * 112.54730 * 263.89120 * 10 9 8 12 12 C 1.55457 * 109.07239 * 138.46811 * 10 9 8 13 13 C 1.53961 * 106.11490 * 228.94451 * 12 10 9 14 14 C 1.53957 * 104.88677 * 29.98052 * 13 12 10 15 15 H 1.09007 * 110.18947 * 211.26923 * 14 13 12 16 16 N 1.46499 * 110.14380 * 89.58291 * 14 13 12 17 17 C 1.36935 * 119.99973 * 152.75624 * 16 14 13 18 18 H 1.07997 * 120.00231 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99402 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00371 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99724 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46734 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47373 * 119.99269 * 21 19 17 24 24 H 1.48500 * 109.47040 * 239.99964 * 21 19 17 25 25 C 1.53563 * 106.03143 * 330.43282 * 14 13 12 26 26 H 1.08997 * 111.66324 * 254.94349 * 25 14 13 27 27 C 1.48360 * 128.19364 * 184.86371 * 8 6 5 28 28 C 1.53002 * 117.51515 * 80.21095 * 5 2 1 29 29 C 1.52997 * 117.49844 * 148.84193 * 5 2 1 30 30 H 1.08999 * 109.47933 * 295.87918 * 1 2 3 31 31 H 1.09007 * 109.46817 * 55.88009 * 1 2 3 32 32 H 1.08999 * 109.46764 * 175.87302 * 1 2 3 33 33 H 1.09004 * 110.46866 * 257.00035 * 9 8 6 34 34 H 1.08996 * 110.47018 * 19.59535 * 9 8 6 35 35 H 1.08993 * 109.75104 * 109.96290 * 12 10 9 36 36 H 1.08997 * 110.50651 * 348.32819 * 12 10 9 37 37 H 1.08994 * 110.35609 * 271.12353 * 13 12 10 38 38 H 1.09005 * 110.44366 * 148.87695 * 13 12 10 39 39 H 0.97006 * 119.99536 * 332.74602 * 16 14 13 40 40 H 0.96999 * 119.99935 * 179.97438 * 20 19 17 41 41 H 1.08997 * 110.46715 * 340.39513 * 27 8 6 42 42 H 1.08996 * 110.47379 * 102.87091 * 27 8 6 43 43 H 1.08994 * 117.50062 * 214.96526 * 28 5 2 44 44 H 1.08999 * 117.49943 * 359.97438 * 28 5 2 45 45 H 1.08995 * 117.49888 * 359.97438 * 29 5 2 46 46 H 1.09008 * 117.49744 * 145.00091 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 6 1.7247 -0.0501 2.5613 7 8 0.6953 -0.3144 3.1457 8 7 2.5893 0.8394 3.0881 9 6 3.8463 1.3585 2.4953 10 6 3.8235 2.8711 2.8288 11 1 3.4310 3.4738 2.0098 12 6 5.2483 3.3173 3.2618 13 6 5.0690 4.1096 4.5697 14 6 3.8278 3.4920 5.2393 15 1 3.2963 4.2484 5.8168 16 7 4.2236 2.3806 6.1079 17 6 3.4519 2.0485 7.1892 18 1 2.5517 2.6060 7.4020 19 6 3.8267 0.9951 8.0119 20 7 4.9234 0.3153 7.7523 21 14 2.7744 0.5423 9.4875 22 1 1.6041 1.4538 9.5591 23 1 2.3032 -0.8590 9.3482 24 1 3.5796 0.6729 10.7284 25 6 2.9401 2.9794 4.0959 26 1 2.0787 3.6273 3.9338 27 6 2.5126 1.5264 4.4008 28 6 2.0580 -2.2509 1.2246 29 6 3.3703 -1.4687 1.1399 30 1 -0.3635 0.4485 0.9246 31 1 -0.3633 0.5765 -0.8508 32 1 -0.3633 -1.0250 -0.0740 33 1 4.7107 0.8777 2.9534 34 1 3.8508 1.2047 1.4163 35 1 5.6839 3.9556 2.4932 36 1 5.8847 2.4492 3.4332 37 1 4.8982 5.1642 4.3538 38 1 5.9435 3.9910 5.2096 39 1 5.0322 1.8800 5.9169 40 1 5.1854 -0.4205 8.3275 41 1 1.4929 1.5018 4.7849 42 1 3.1983 1.0666 5.1124 43 1 1.8421 -2.7719 2.1573 44 1 1.7062 -2.7438 0.3184 45 1 3.8821 -1.4472 0.1778 46 1 4.0176 -1.4752 2.0169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026361276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:46 Heat of formation + Delta-G solvation = -100.658671 kcal Electronic energy + Delta-G solvation = -30494.038141 eV Core-core repulsion = 26248.016525 eV Total energy + Delta-G solvation = -4246.021616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.13230 -48.12334 -41.57956 -40.10533 -37.65328 -36.50520 -35.07860 -32.63998 -32.28750 -30.62834 -29.71754 -26.94611 -26.40769 -25.10517 -24.78630 -23.57843 -22.75775 -21.13567 -20.03472 -19.88568 -19.34363 -18.76877 -18.45951 -17.53984 -17.23608 -16.98983 -16.67007 -16.53363 -15.98475 -15.53458 -15.29385 -15.09094 -15.05953 -14.74711 -14.40356 -14.31842 -14.01490 -13.95812 -13.74633 -13.49060 -13.40725 -13.12519 -13.08286 -12.88439 -12.84795 -12.60030 -12.32320 -12.19216 -12.14678 -11.87318 -11.74725 -11.57631 -11.45506 -11.42931 -11.37948 -11.31975 -10.93788 -10.87484 -9.75609 -8.85767 -7.94994 -5.20790 1.32289 1.42984 1.46359 1.52824 1.79151 2.30420 2.54536 2.56714 2.97574 3.12995 3.33468 3.39431 3.46760 3.56117 3.71243 3.82371 3.83405 3.88520 4.18181 4.36196 4.39537 4.40340 4.50523 4.52814 4.53407 4.59797 4.62882 4.65267 4.77825 4.80394 4.81137 4.88908 4.91924 4.99279 5.05386 5.10354 5.20287 5.26156 5.41254 5.48164 5.53635 5.61780 5.66326 6.28709 6.57708 7.00370 7.36558 8.11462 8.34828 9.27444 Molecular weight = 328.17amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.004428 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.720359 B = 6322.231304 C = 7359.883563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.340 3.660 3 F -0.200 7.200 4 F -0.187 7.187 5 C -0.226 4.226 6 C 0.564 3.436 7 O -0.581 6.581 8 N -0.610 5.610 9 C 0.111 3.889 10 C -0.088 4.088 11 H 0.101 0.899 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.170 3.830 15 H 0.048 0.952 16 N -0.717 5.717 17 C -0.228 4.228 18 H 0.069 0.931 19 C -0.063 4.063 20 N -0.961 5.961 21 Si 0.951 3.049 22 H -0.271 1.271 23 H -0.302 1.302 24 H -0.292 1.292 25 C -0.118 4.118 26 H 0.074 0.926 27 C 0.108 3.892 28 C -0.116 4.116 29 C -0.137 4.137 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.376 0.624 40 H 0.249 0.751 41 H 0.031 0.969 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 1.583 -20.309 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.303 3.697 3 F -0.181 7.181 4 F -0.168 7.168 5 C -0.230 4.230 6 C 0.352 3.648 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.011 4.011 10 C -0.107 4.107 11 H 0.119 0.881 12 C -0.141 4.141 13 C -0.159 4.159 14 C 0.060 3.940 15 H 0.066 0.934 16 N -0.356 5.356 17 C -0.360 4.360 18 H 0.087 0.913 19 C -0.256 4.256 20 N -0.611 5.611 21 Si 0.783 3.217 22 H -0.196 1.196 23 H -0.230 1.230 24 H -0.219 1.219 25 C -0.140 4.140 26 H 0.092 0.908 27 C -0.014 4.014 28 C -0.153 4.153 29 C -0.174 4.174 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.209 0.791 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.447 1.422 -19.914 20.114 hybrid contribution -0.395 -0.574 1.408 1.571 sum -2.842 0.848 -18.506 18.742 Atomic orbital electron populations 1.22717 0.89628 1.06901 1.05231 1.19977 0.94427 0.74505 0.80750 1.93011 1.90682 1.37674 1.96694 1.93006 1.90685 1.80870 1.52267 1.22207 1.09591 0.98435 0.92777 1.19068 0.82108 0.78294 0.85340 1.90668 1.27110 1.64608 1.63801 1.49294 1.23676 1.41108 1.20025 1.22877 0.85122 0.93922 0.99174 1.22953 0.96211 0.94600 0.96914 0.88114 1.22387 0.94627 1.00089 0.97019 1.22385 0.97148 1.00013 0.96351 1.20958 0.94283 0.88977 0.89737 0.93373 1.42602 1.28083 1.36239 1.28719 1.19481 1.03670 1.10519 1.02346 0.91258 1.25261 0.98949 0.99512 1.01884 1.69761 1.26096 1.24185 1.41093 0.85389 0.78601 0.77209 0.80546 1.19578 1.22984 1.21920 1.23150 0.98977 0.94869 0.96997 0.90785 1.22962 1.00917 0.93259 0.84292 1.23182 0.99341 0.87134 1.05670 1.23318 0.89366 0.98992 1.05749 0.91008 0.88023 0.87547 0.91026 0.88967 0.89118 0.92067 0.89447 0.92125 0.79066 0.94200 0.95001 0.87767 0.88304 0.84320 0.84738 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.77 9.31 71.98 0.67 -3.10 16 2 C 0.34 7.70 2.08 30.59 0.06 7.76 16 3 F -0.20 -5.03 15.49 44.97 0.70 -4.34 16 4 F -0.19 -3.79 15.65 44.97 0.70 -3.08 16 5 C -0.23 -5.77 0.91 -52.93 -0.05 -5.82 16 6 C 0.56 20.00 6.29 87.66 0.55 20.55 16 7 O -0.58 -25.20 16.92 -3.04 -0.05 -25.25 16 8 N -0.61 -21.48 3.31 -805.65 -2.66 -24.14 16 9 C 0.11 3.10 5.77 86.68 0.50 3.60 16 10 C -0.09 -2.29 4.06 -8.67 -0.04 -2.33 16 11 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.10 -2.44 6.41 31.76 0.20 -2.24 16 13 C -0.12 -3.34 6.41 31.24 0.20 -3.14 16 14 C 0.17 6.09 3.48 45.50 0.16 6.25 16 15 H 0.05 1.79 8.07 -2.38 -0.02 1.77 16 16 N -0.72 -32.82 3.31 -320.51 -1.06 -33.88 16 17 C -0.23 -12.02 8.31 84.03 0.70 -11.32 16 18 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 20 N -0.96 -56.55 13.06 21.65 0.28 -56.27 16 21 Si 0.95 46.42 29.55 68.60 2.03 48.44 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 25 C -0.12 -3.92 3.88 -9.47 -0.04 -3.96 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 C 0.11 4.42 5.85 86.53 0.51 4.93 16 28 C -0.12 -2.42 9.69 30.60 0.30 -2.13 16 29 C -0.14 -2.84 8.50 30.60 0.26 -2.58 16 30 H 0.07 1.81 7.23 -2.39 -0.02 1.80 16 31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 2.07 7.25 -2.39 -0.02 2.06 16 34 H 0.09 2.21 5.78 -2.39 -0.01 2.20 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.56 7.20 -2.39 -0.02 1.54 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.84 8.09 -2.38 -0.02 1.82 16 39 H 0.38 18.51 7.85 -92.70 -0.73 17.79 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 42 H 0.10 5.08 5.00 -2.39 -0.01 5.07 16 43 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.14 2.09 7.94 -2.39 -0.02 2.07 16 45 H 0.13 2.17 7.62 -2.39 -0.02 2.15 16 46 H 0.10 2.33 8.10 -2.38 -0.02 2.31 16 Total: -1.00 -66.44 366.19 4.66 -61.77 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.27 Total: 33.32 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 4.46 Total: 3.42 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.44 Total: -114.29 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.40 Total: -7.42 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -66.44 4.66 -61.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026361276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.886 kcal (2) G-P(sol) polarization free energy of solvation -66.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds