Wall clock time and date at job start Tue Mar 31 2020 16:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48491 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47157 * 300.00404 * 3 2 1 6 6 H 1.48502 * 109.47083 * 60.00228 * 3 2 1 7 7 C 1.38815 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99591 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47075 * 85.00119 * 10 9 7 12 12 C 1.52997 * 109.47317 * 59.99940 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21279 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.54341 * 110.82461 * 292.96878 * 17 15 14 19 19 C 1.51368 * 105.17382 * 215.42719 * 18 17 15 20 20 C 1.38495 * 130.39179 * 197.19227 * 19 18 17 21 21 C 1.38101 * 120.21447 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.93764 * 359.97438 * 21 20 19 23 23 C 1.38103 * 119.93317 * 0.02562 * 22 21 20 24 24 C 1.38216 * 109.75808 * 17.18598 * 19 18 17 25 25 C 1.51372 * 109.75777 * 0.02562 * 24 19 18 26 26 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 13 12 28 28 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00553 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47020 * 324.99764 * 10 9 7 31 31 H 1.08996 * 109.46929 * 299.99044 * 11 10 9 32 32 H 1.09002 * 109.46716 * 179.97438 * 11 10 9 33 33 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 36 36 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 37 37 H 1.09007 * 110.73197 * 56.59409 * 17 15 14 38 38 H 1.08998 * 110.30230 * 334.35487 * 18 17 15 39 39 H 1.09008 * 110.29964 * 96.50352 * 18 17 15 40 40 H 1.08003 * 119.88986 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.03077 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.03961 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.89379 * 180.02562 * 23 22 21 44 44 H 1.09005 * 110.29983 * 223.88850 * 25 24 19 45 45 H 1.08994 * 110.38937 * 101.77216 * 25 24 19 46 46 H 1.08993 * 109.47662 * 180.02562 * 26 13 12 47 47 H 1.09002 * 109.47075 * 300.00932 * 26 13 12 48 48 H 1.09002 * 109.47153 * 60.00231 * 27 26 13 49 49 H 1.09001 * 109.47289 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4219 -4.0356 1.4365 12 6 1.1437 -4.1848 2.2639 13 6 0.2665 -5.2802 1.6542 14 7 -0.9578 -5.4225 2.4461 15 6 -1.6289 -6.5913 2.4450 16 8 -1.2196 -7.5250 1.7881 17 6 -2.8880 -6.7380 3.2601 18 6 -2.5748 -6.6734 4.7700 19 6 -3.5436 -7.6397 5.4173 20 6 -3.9387 -7.7642 6.7388 21 6 -4.8497 -8.7360 7.1032 22 6 -5.3700 -9.5875 6.1464 23 6 -4.9772 -9.4649 4.8281 24 6 -4.0638 -8.4909 4.4606 25 6 -3.4797 -8.1552 3.1051 26 6 -0.0975 -4.9013 0.2172 27 6 1.1808 -4.7522 -0.6102 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.9688 -3.5506 -0.5900 31 1 3.0470 -3.2554 1.8707 32 1 2.9666 -4.9798 1.4364 33 1 0.5987 -3.2408 2.2639 34 1 1.4030 -4.4551 3.2875 35 1 0.8114 -6.2241 1.6541 36 1 -1.2854 -4.6756 2.9713 37 1 -3.6194 -5.9797 2.9803 38 1 -1.5474 -6.9858 4.9569 39 1 -2.7385 -5.6640 5.1474 40 1 -3.5324 -7.0996 7.4870 41 1 -5.1555 -8.8307 8.1347 42 1 -6.0823 -10.3484 6.4296 43 1 -5.3844 -10.1302 4.0810 44 1 -4.2614 -8.1572 2.3454 45 1 -2.6962 -8.8661 2.8426 46 1 -0.7228 -5.6814 -0.2170 47 1 -0.6424 -3.9573 0.2173 48 1 1.7258 -5.6961 -0.6102 49 1 0.9216 -4.4818 -1.6338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026567560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:01 Heat of formation + Delta-G solvation = -20.832355 kcal Electronic energy + Delta-G solvation = -27622.200251 eV Core-core repulsion = 23933.869693 eV Total energy + Delta-G solvation = -3688.330557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78394 -39.51389 -38.04225 -35.61218 -34.64147 -32.83357 -31.66324 -30.55666 -30.26235 -29.42395 -27.67670 -27.35824 -24.07817 -23.46543 -22.21093 -21.86644 -21.24174 -21.01038 -19.97737 -18.52124 -17.31682 -17.20178 -16.45511 -16.19936 -15.96969 -15.18254 -14.98724 -14.54933 -14.39382 -14.26784 -13.82930 -13.56069 -13.49030 -13.36658 -13.14601 -12.95851 -12.74960 -12.51736 -12.34609 -11.98046 -11.71935 -11.65300 -11.48021 -11.42876 -11.37018 -11.03375 -10.91748 -10.77598 -10.63153 -10.36257 -10.19503 -10.06528 -9.86310 -9.54541 -9.46680 -9.05557 -8.92523 -8.77528 -8.73234 -6.94116 -5.77639 -3.04865 1.10122 1.14206 2.65620 3.22973 3.41655 3.48139 3.49727 3.50621 4.06268 4.28254 4.59163 4.68776 4.73466 4.75417 4.79743 4.96690 5.07592 5.20840 5.24708 5.27550 5.34647 5.47356 5.48305 5.51907 5.58913 5.60044 5.71406 5.78091 5.81005 5.82970 5.87884 5.96986 5.99302 6.06639 6.12505 6.18862 6.23719 6.25595 6.40487 6.41725 6.47977 6.61697 6.70678 6.74752 6.75395 6.91127 6.99156 7.07802 7.62862 7.70991 8.29477 8.42049 9.53331 10.12466 10.47488 11.45258 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.002313 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.512669 B =12102.314977 C =12752.806083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.117 4.117 13 C 0.149 3.851 14 N -0.719 5.719 15 C 0.522 3.478 16 O -0.542 6.542 17 C -0.112 4.112 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.091 4.091 25 C -0.068 4.068 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.253 0.747 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.401 0.599 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -17.620 12.171 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.045 3.955 14 N -0.369 5.369 15 C 0.308 3.692 16 O -0.419 6.419 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.126 4.126 24 C -0.091 4.091 25 C -0.106 4.106 26 C -0.162 4.162 27 C -0.158 4.158 28 H 0.063 0.937 29 H 0.219 0.781 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.076 0.924 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.413 -18.142 11.672 23.155 hybrid contribution -0.120 1.416 0.364 1.467 sum -8.533 -16.726 12.036 22.303 Atomic orbital electron populations 1.69665 1.05035 1.25394 1.58237 1.24708 0.95489 0.97556 1.03373 0.86158 0.78806 0.84377 0.77114 1.20641 1.22006 1.22017 1.19312 0.91032 0.84228 1.41907 0.91218 1.42499 1.05743 0.99605 1.88438 1.20256 0.94370 0.86521 0.92751 1.22084 0.96007 0.99773 0.99119 1.21662 0.97254 0.98718 0.97848 1.21068 0.84180 0.99542 0.90700 1.46177 1.27264 1.14186 1.49234 1.20239 0.84801 0.82627 0.81547 1.90680 1.68401 1.39437 1.43390 1.22015 0.96231 0.99884 0.95201 1.20975 0.98696 0.99102 0.92023 1.20514 0.97873 0.97671 0.93610 1.20628 0.98011 0.98834 0.94849 1.21027 0.97779 0.95897 0.99453 1.21040 1.00326 0.99553 0.92931 1.20631 0.97574 0.98069 0.96336 1.20634 0.96546 0.95797 0.96093 1.20948 1.00446 0.95453 0.93704 1.21815 0.98405 1.01673 0.94348 1.21739 0.96111 0.98613 0.99315 0.93683 0.78142 0.93390 0.91707 0.93617 0.89953 0.93057 0.90184 0.76520 0.87367 0.89624 0.89682 0.86158 0.85945 0.85953 0.86168 0.90216 0.88167 0.92577 0.90911 0.92448 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.05 4.28 -53.42 -0.23 -17.28 16 10 C 0.17 3.27 3.10 -67.93 -0.21 3.06 16 11 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 12 C -0.12 -1.83 5.23 -26.73 -0.14 -1.97 16 13 C 0.15 2.21 2.45 -67.93 -0.17 2.05 16 14 N -0.72 -9.18 5.08 -53.81 -0.27 -9.45 16 15 C 0.52 6.88 7.01 -10.98 -0.08 6.81 16 16 O -0.54 -9.04 15.17 5.56 0.08 -8.96 16 17 C -0.11 -1.14 3.47 -90.35 -0.31 -1.45 16 18 C -0.07 -0.64 6.31 -26.85 -0.17 -0.81 16 19 C -0.10 -0.96 6.14 -104.21 -0.64 -1.60 16 20 C -0.11 -0.93 10.04 -39.54 -0.40 -1.33 16 21 C -0.12 -1.00 10.05 -39.63 -0.40 -1.40 16 22 C -0.12 -0.98 10.05 -39.63 -0.40 -1.38 16 23 C -0.11 -0.99 10.04 -39.54 -0.40 -1.38 16 24 C -0.09 -0.93 6.14 -104.20 -0.64 -1.57 16 25 C -0.07 -0.71 6.10 -26.84 -0.16 -0.88 16 26 C -0.12 -2.03 5.32 -26.73 -0.14 -2.17 16 27 C -0.12 -2.00 5.61 -26.73 -0.15 -2.15 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.38 9.62 6.06 -40.82 -0.25 9.38 16 30 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.50 7.60 -51.93 -0.39 1.11 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 36 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 37 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.21 6.98 -51.93 -0.36 0.85 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.33 6.51 -51.93 -0.34 0.99 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -31.13 387.49 -11.63 -42.77 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.96 Total: 12.15 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -4.80 Total: -15.42 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.22 Total: -53.36 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.13 -11.63 -42.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026567560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.935 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds