Wall clock time and date at job start Tue Mar 31 2020 16:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00309 * 2 1 4 4 H 1.48497 * 109.46998 * 269.99643 * 3 2 1 5 5 H 1.48496 * 109.46904 * 29.99962 * 3 2 1 6 6 H 1.48503 * 109.47108 * 149.99669 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00089 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46652 * 154.99991 * 10 9 7 12 12 C 1.53006 * 109.46882 * 180.02562 * 11 10 9 13 13 C 1.52991 * 109.47117 * 300.00409 * 12 11 10 14 14 N 1.46506 * 109.47282 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00268 * 155.00081 * 14 13 12 16 16 O 1.21552 * 119.99899 * 0.27240 * 15 14 13 17 17 C 1.47846 * 119.99810 * 180.02562 * 15 14 13 18 18 C 1.39586 * 120.19032 * 359.97438 * 17 15 14 19 19 C 1.37795 * 119.78973 * 180.02562 * 18 17 15 20 20 C 1.38671 * 120.41165 * 0.02562 * 19 18 17 21 21 C 1.38372 * 120.07583 * 359.97438 * 20 19 18 22 22 C 1.38242 * 119.99828 * 359.72844 * 21 20 19 23 23 C 1.51392 * 109.74369 * 179.97438 * 21 20 19 24 24 C 1.54331 * 105.17346 * 342.78696 * 23 21 20 25 25 C 1.51418 * 130.22104 * 180.02562 * 20 19 18 26 26 C 1.53006 * 109.47579 * 60.00018 * 13 12 11 27 27 C 1.52991 * 109.47282 * 275.00361 * 10 9 7 28 28 H 0.97000 * 119.99512 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99951 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46730 * 35.00773 * 10 9 7 31 31 H 1.08999 * 109.47334 * 60.00759 * 11 10 9 32 32 H 1.08999 * 109.47244 * 299.99908 * 11 10 9 33 33 H 1.08994 * 109.46869 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46567 * 60.00227 * 12 11 10 35 35 H 1.08994 * 109.47574 * 299.99716 * 13 12 11 36 36 H 0.96999 * 119.99689 * 335.00198 * 14 13 12 37 37 H 1.08006 * 120.10166 * 0.02903 * 18 17 15 38 38 H 1.08000 * 119.79571 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.94999 * 180.27806 * 22 21 20 40 40 H 1.08994 * 110.30716 * 223.85802 * 23 21 20 41 41 H 1.09001 * 110.38209 * 101.75211 * 23 21 20 42 42 H 1.09001 * 110.81942 * 268.17454 * 24 23 21 43 43 H 1.09005 * 110.98948 * 144.71364 * 24 23 21 44 44 H 1.09004 * 110.30219 * 316.15165 * 25 20 19 45 45 H 1.08997 * 110.30254 * 78.28829 * 25 20 19 46 46 H 1.08999 * 109.47334 * 59.99430 * 26 13 12 47 47 H 1.08999 * 109.47244 * 180.02562 * 26 13 12 48 48 H 1.08999 * 109.47253 * 299.99577 * 27 10 9 49 49 H 1.08994 * 109.47639 * 60.00176 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.4995 -2.2594 -0.6071 12 6 6.2642 -3.5846 -0.6065 13 6 6.4097 -4.0888 0.8306 14 7 7.1415 -5.3581 0.8311 15 6 7.8236 -5.7422 1.9282 16 8 7.8277 -5.0380 2.9189 17 6 8.5625 -7.0228 1.9284 18 6 8.5558 -7.8373 0.7948 19 6 9.2469 -9.0294 0.8043 20 6 9.9484 -9.4252 1.9331 21 6 9.9589 -8.6222 3.0600 22 6 9.2741 -7.4213 3.0594 23 6 10.7890 -9.2746 4.1450 24 6 10.9199 -10.7524 3.7200 25 6 10.7724 -10.6701 2.1856 26 6 5.0222 -4.3005 1.4399 27 6 4.2575 -2.9747 1.4395 28 1 -0.4849 0.8401 -0.0004 29 1 3.8645 -0.3622 0.0014 30 1 3.5649 -3.2068 -0.5871 31 1 6.0467 -1.5235 -0.0178 32 1 5.3958 -1.9006 -1.6311 33 1 7.2524 -3.4339 -1.0409 34 1 5.7169 -4.3201 -1.1960 35 1 6.9570 -3.3534 1.4201 36 1 7.1350 -5.9219 0.0419 37 1 8.0108 -7.5340 -0.0869 38 1 9.2414 -9.6598 -0.0726 39 1 9.2865 -6.7931 3.9378 40 1 10.2803 -9.2011 5.1062 41 1 11.7728 -8.8088 4.2020 42 1 10.1211 -11.3529 4.1552 43 1 11.8962 -11.1524 3.9939 44 1 10.2525 -11.5508 1.8084 45 1 11.7513 -10.5776 1.7151 46 1 4.4749 -5.0360 0.8504 47 1 5.1259 -4.6593 2.4639 48 1 4.8047 -2.2388 2.0287 49 1 3.2691 -3.1254 1.8735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026603726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:29 Heat of formation + Delta-G solvation = -19.265408 kcal Electronic energy + Delta-G solvation = -27009.554796 eV Core-core repulsion = 23321.292186 eV Total energy + Delta-G solvation = -3688.262609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81267 -39.68277 -38.03400 -35.87292 -35.00810 -33.06912 -31.84845 -31.07844 -30.47117 -29.66072 -27.89837 -27.50309 -24.03949 -22.92988 -22.56643 -22.24662 -21.26292 -20.90704 -20.19293 -19.55903 -17.89066 -17.37167 -16.58607 -16.11216 -15.78954 -15.32014 -15.22377 -14.97206 -14.69523 -14.29054 -13.91287 -13.84288 -13.54575 -13.42843 -13.34054 -12.94529 -12.91890 -12.62911 -12.29226 -12.18524 -12.00609 -11.95074 -11.71645 -11.65447 -11.35753 -11.18695 -11.12803 -10.87630 -10.86353 -10.65464 -10.24754 -10.17608 -9.91958 -9.80903 -9.54854 -9.23021 -9.07517 -8.88298 -8.84415 -7.23312 -5.74292 -3.09333 0.53085 0.99275 2.65288 3.01048 3.40010 3.43277 3.47716 3.55496 3.92229 4.07960 4.45958 4.52566 4.56268 4.61886 4.68728 4.79973 4.82536 4.94758 4.97496 5.12930 5.17476 5.21747 5.29378 5.34545 5.42640 5.48285 5.53732 5.56598 5.59344 5.63198 5.66915 5.72273 5.77761 5.80725 5.93435 5.93946 6.00724 6.12124 6.18311 6.19265 6.22053 6.37675 6.47055 6.50006 6.57034 6.66167 6.91784 7.07272 7.41013 8.02693 8.11913 8.45115 9.24051 9.96821 10.16914 11.44167 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.001938 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.025668 B =14443.238759 C =14585.089321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.181 3.819 11 C -0.124 4.124 12 C -0.119 4.119 13 C 0.145 3.855 14 N -0.720 5.720 15 C 0.557 3.443 16 O -0.535 6.535 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.076 4.076 21 C -0.107 4.107 22 C -0.048 4.048 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.086 4.086 26 C -0.124 4.124 27 C -0.132 4.132 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.397 0.603 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.359 -23.229 2.167 34.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.072 3.928 11 C -0.163 4.163 12 C -0.157 4.157 13 C 0.041 3.959 14 N -0.371 5.371 15 C 0.344 3.656 16 O -0.413 6.413 17 C -0.134 4.134 18 C -0.105 4.105 19 C -0.133 4.133 20 C -0.076 4.076 21 C -0.107 4.107 22 C -0.067 4.067 23 C -0.120 4.120 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.163 4.163 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.088 -22.750 2.860 33.987 hybrid contribution 0.410 1.005 -0.401 1.157 sum 25.498 -21.745 2.458 33.601 Atomic orbital electron populations 1.69701 1.05104 1.25755 1.57742 1.24674 0.95234 0.97200 1.02170 0.86548 0.79264 0.85026 0.77703 1.21159 1.21819 1.20295 1.19082 0.80643 0.94656 1.42707 0.89237 1.42797 1.03988 1.02070 1.90288 1.20222 0.90218 0.89116 0.93238 1.21792 0.96882 0.95840 1.01755 1.21738 1.00534 0.98486 0.94974 1.21141 0.92775 0.84478 0.97478 1.46068 1.51480 1.23538 1.15998 1.18224 0.78750 0.85351 0.83232 1.90787 1.62677 1.54795 1.33017 1.19857 1.02021 0.95951 0.95592 1.21192 0.98137 0.93942 0.97191 1.20550 0.98137 0.96751 0.97865 1.20854 0.96419 0.96606 0.93743 1.20560 0.98850 0.94663 0.96604 1.20720 0.93553 0.94679 0.97729 1.21062 0.99216 0.94685 0.97016 1.22308 1.02589 0.96134 0.94816 1.21131 0.99249 0.95096 0.96780 1.21909 0.94547 0.99185 1.00695 1.22197 1.00026 0.94763 1.00333 0.93126 0.80705 0.92668 0.92068 0.91231 0.91758 0.91333 0.89373 0.76827 0.85332 0.85562 0.84800 0.90385 0.89994 0.90777 0.90347 0.90393 0.89859 0.92077 0.92162 0.92587 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.56 13.97 55.49 0.78 -28.79 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.26 16 7 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.68 4.92 -53.43 -0.26 -17.95 16 10 C 0.18 3.41 2.77 -67.93 -0.19 3.22 16 11 C -0.12 -1.85 5.39 -26.72 -0.14 -1.99 16 12 C -0.12 -1.39 5.39 -26.73 -0.14 -1.53 16 13 C 0.14 1.88 2.45 -67.93 -0.17 1.72 16 14 N -0.72 -7.96 5.03 -54.75 -0.28 -8.23 16 15 C 0.56 7.29 7.74 -12.33 -0.10 7.20 16 16 O -0.54 -9.07 16.01 5.32 0.09 -8.99 16 17 C -0.13 -1.41 5.87 -105.02 -0.62 -2.03 16 18 C -0.09 -0.70 9.54 -39.24 -0.37 -1.08 16 19 C -0.12 -0.85 10.02 -39.58 -0.40 -1.24 16 20 C -0.08 -0.58 6.14 -104.06 -0.64 -1.22 16 21 C -0.11 -0.92 6.13 -104.23 -0.64 -1.56 16 22 C -0.05 -0.51 9.59 -39.13 -0.38 -0.88 16 23 C -0.08 -0.51 6.77 -26.85 -0.18 -0.69 16 24 C -0.12 -0.56 7.08 -25.32 -0.18 -0.74 16 25 C -0.09 -0.44 6.77 -26.82 -0.18 -0.62 16 26 C -0.12 -1.84 5.50 -26.70 -0.15 -1.98 16 27 C -0.13 -2.37 5.51 -26.71 -0.15 -2.51 16 28 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 29 H 0.36 8.40 5.66 -40.82 -0.23 8.17 16 30 H 0.06 1.07 8.08 -51.93 -0.42 0.66 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 36 H 0.40 3.18 6.64 -40.82 -0.27 2.91 16 37 H 0.13 0.74 6.41 -52.48 -0.34 0.40 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 1.48 7.64 -52.49 -0.40 1.07 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -34.18 387.39 -11.41 -45.59 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.99 Total: 7.82 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.87 Total: -12.93 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.24 Total: -54.97 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.18 -11.41 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026603726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.328 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds