Wall clock time and date at job start Tue Mar 31 2020 16:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00309 * 2 1 4 4 H 1.48497 * 109.46998 * 269.99643 * 3 2 1 5 5 H 1.48496 * 109.46904 * 29.99962 * 3 2 1 6 6 H 1.48503 * 109.47108 * 149.99669 * 3 2 1 7 7 C 1.38815 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00089 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99885 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46652 * 154.99991 * 10 9 7 12 12 C 1.53006 * 109.46882 * 180.02562 * 11 10 9 13 13 C 1.52991 * 109.47117 * 300.00409 * 12 11 10 14 14 N 1.46506 * 109.47282 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00268 * 155.00081 * 14 13 12 16 16 O 1.21552 * 119.99899 * 0.27240 * 15 14 13 17 17 C 1.47846 * 119.99810 * 180.02562 * 15 14 13 18 18 C 1.39586 * 120.19032 * 359.97438 * 17 15 14 19 19 C 1.37795 * 119.78973 * 180.02562 * 18 17 15 20 20 C 1.38671 * 120.41165 * 0.02562 * 19 18 17 21 21 C 1.38372 * 120.07583 * 359.97438 * 20 19 18 22 22 C 1.38242 * 119.99828 * 359.72844 * 21 20 19 23 23 C 1.51392 * 109.74369 * 179.97438 * 21 20 19 24 24 C 1.54331 * 105.17346 * 342.78696 * 23 21 20 25 25 C 1.51418 * 130.22104 * 180.02562 * 20 19 18 26 26 C 1.53006 * 109.47579 * 60.00018 * 13 12 11 27 27 C 1.52991 * 109.47282 * 275.00361 * 10 9 7 28 28 H 0.97000 * 119.99512 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99951 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46730 * 35.00773 * 10 9 7 31 31 H 1.08999 * 109.47334 * 60.00759 * 11 10 9 32 32 H 1.08999 * 109.47244 * 299.99908 * 11 10 9 33 33 H 1.08994 * 109.46869 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.46567 * 60.00227 * 12 11 10 35 35 H 1.08994 * 109.47574 * 299.99716 * 13 12 11 36 36 H 0.96999 * 119.99689 * 335.00198 * 14 13 12 37 37 H 1.08006 * 120.10166 * 0.02903 * 18 17 15 38 38 H 1.08000 * 119.79571 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.94999 * 180.27806 * 22 21 20 40 40 H 1.08994 * 110.30716 * 223.85802 * 23 21 20 41 41 H 1.09001 * 110.38209 * 101.75211 * 23 21 20 42 42 H 1.09001 * 110.81942 * 268.17454 * 24 23 21 43 43 H 1.09005 * 110.98948 * 144.71364 * 24 23 21 44 44 H 1.09004 * 110.30219 * 316.15165 * 25 20 19 45 45 H 1.08997 * 110.30254 * 78.28829 * 25 20 19 46 46 H 1.08999 * 109.47334 * 59.99430 * 26 13 12 47 47 H 1.08999 * 109.47244 * 180.02562 * 26 13 12 48 48 H 1.08999 * 109.47253 * 299.99577 * 27 10 9 49 49 H 1.08994 * 109.47639 * 60.00176 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0022 11 6 5.4995 -2.2594 -0.6071 12 6 6.2642 -3.5846 -0.6065 13 6 6.4097 -4.0888 0.8306 14 7 7.1415 -5.3581 0.8311 15 6 7.8236 -5.7422 1.9282 16 8 7.8277 -5.0380 2.9189 17 6 8.5625 -7.0228 1.9284 18 6 8.5558 -7.8373 0.7948 19 6 9.2469 -9.0294 0.8043 20 6 9.9484 -9.4252 1.9331 21 6 9.9589 -8.6222 3.0600 22 6 9.2741 -7.4213 3.0594 23 6 10.7890 -9.2746 4.1450 24 6 10.9199 -10.7524 3.7200 25 6 10.7724 -10.6701 2.1856 26 6 5.0222 -4.3005 1.4399 27 6 4.2575 -2.9747 1.4395 28 1 -0.4849 0.8401 -0.0004 29 1 3.8645 -0.3622 0.0014 30 1 3.5649 -3.2068 -0.5871 31 1 6.0467 -1.5235 -0.0178 32 1 5.3958 -1.9006 -1.6311 33 1 7.2524 -3.4339 -1.0409 34 1 5.7169 -4.3201 -1.1960 35 1 6.9570 -3.3534 1.4201 36 1 7.1350 -5.9219 0.0419 37 1 8.0108 -7.5340 -0.0869 38 1 9.2414 -9.6598 -0.0726 39 1 9.2865 -6.7931 3.9378 40 1 10.2803 -9.2011 5.1062 41 1 11.7728 -8.8088 4.2020 42 1 10.1211 -11.3529 4.1552 43 1 11.8962 -11.1524 3.9939 44 1 10.2525 -11.5508 1.8084 45 1 11.7513 -10.5776 1.7151 46 1 4.4749 -5.0360 0.8504 47 1 5.1259 -4.6593 2.4639 48 1 4.8047 -2.2388 2.0287 49 1 3.2691 -3.1254 1.8735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026603726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:28 Heat of formation + Delta-G solvation = -39.997721 kcal Electronic energy + Delta-G solvation = -27010.453816 eV Core-core repulsion = 23321.292186 eV Total energy + Delta-G solvation = -3689.161630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59999 -40.55965 -39.28555 -36.51855 -36.48454 -34.67295 -32.93047 -32.45702 -31.71904 -30.52998 -28.94214 -28.29488 -25.47655 -24.22199 -23.64439 -23.06281 -22.25915 -21.72146 -21.29256 -20.80244 -19.56603 -18.53327 -17.53388 -16.85643 -16.62032 -16.46434 -16.27807 -15.99350 -15.91109 -15.58488 -15.10017 -15.00536 -14.67279 -14.60575 -14.36915 -14.12633 -13.74097 -13.69700 -13.50111 -13.39312 -13.12620 -12.91690 -12.84039 -12.50061 -12.43172 -12.30977 -12.07475 -12.04073 -12.00176 -11.84976 -11.79807 -11.69333 -11.49312 -11.23241 -11.04055 -10.88064 -10.14831 -9.85128 -9.51876 -9.29781 -8.01592 -5.34274 -0.18374 0.36106 1.37756 1.40991 1.48153 1.79652 2.06428 2.48966 2.81478 3.29154 3.38956 3.56188 3.59417 3.71047 3.79010 3.84520 4.00786 4.14188 4.18217 4.23327 4.27331 4.31011 4.33305 4.36853 4.50052 4.56478 4.60292 4.68810 4.71943 4.83234 4.85773 4.92114 4.95321 5.01110 5.08614 5.11742 5.12080 5.17969 5.21820 5.24655 5.30312 5.31331 5.40591 5.44385 5.49765 5.58515 5.58709 5.79071 5.90607 6.23174 6.52075 7.09379 7.18091 7.86638 8.05321 9.20079 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.001938 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.025668 B =14443.238759 C =14585.089321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.226 4.226 8 H 0.056 0.944 9 N -0.753 5.753 10 C 0.175 3.825 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.152 3.848 14 N -0.704 5.704 15 C 0.555 3.445 16 O -0.585 6.585 17 C -0.153 4.153 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.120 4.120 22 C -0.070 4.070 23 C -0.087 4.087 24 C -0.117 4.117 25 C -0.084 4.084 26 C -0.114 4.114 27 C -0.125 4.125 28 H 0.257 0.743 29 H 0.364 0.636 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.554 -25.126 0.205 38.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.357 4.357 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.047 3.953 14 N -0.355 5.355 15 C 0.344 3.656 16 O -0.466 6.466 17 C -0.156 4.156 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.077 4.077 21 C -0.120 4.120 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.154 4.154 25 C -0.121 4.121 26 C -0.153 4.153 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.197 0.803 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.254 0.746 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 28.339 -24.705 0.863 37.606 hybrid contribution -0.585 1.435 0.253 1.570 sum 27.754 -23.270 1.117 36.236 Atomic orbital electron populations 1.69886 1.07117 1.26540 1.60075 1.25507 0.96124 1.01248 1.02988 0.85402 0.78483 0.79676 0.78166 1.20088 1.22582 1.17976 1.19041 0.82739 0.93318 1.40632 0.92600 1.42843 1.02426 1.04100 1.90189 1.20482 0.92169 0.86989 0.93661 1.21698 0.94247 0.97910 1.01663 1.21665 1.01868 0.96968 0.93978 1.20917 0.91201 0.85019 0.98159 1.45832 1.50403 1.22996 1.16280 1.18658 0.78446 0.85743 0.82757 1.90758 1.64538 1.56440 1.34880 1.19753 1.03197 0.95644 0.97014 1.21474 0.97883 0.93679 0.96885 1.20937 0.97113 0.96590 0.98741 1.21320 0.95881 0.97179 0.93287 1.20841 0.98875 0.94149 0.98158 1.20738 0.95065 0.95691 0.97459 1.21165 0.99036 0.95854 0.96307 1.22338 1.03734 0.94753 0.94617 1.21226 0.99560 0.94247 0.97062 1.21780 0.95706 0.97413 1.00400 1.22026 0.98671 0.96392 0.99454 0.93470 0.80258 0.93300 0.91986 0.90387 0.88848 0.89349 0.91373 0.74623 0.82679 0.82558 0.86834 0.90655 0.89387 0.90690 0.88482 0.88906 0.88490 0.90769 0.93695 0.93430 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.19 13.97 21.65 0.30 -63.89 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.96 46.41 27.74 68.60 1.90 48.31 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.25 -11.32 6.52 99.48 0.65 -10.67 16 7 C -0.23 -13.05 10.41 84.03 0.87 -12.17 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 N -0.75 -35.34 4.92 -322.94 -1.59 -36.93 16 10 C 0.17 6.47 2.77 44.99 0.12 6.59 16 11 C -0.12 -3.19 5.39 30.60 0.16 -3.02 16 12 C -0.11 -2.13 5.39 30.59 0.16 -1.96 16 13 C 0.15 3.72 2.45 44.99 0.11 3.83 16 14 N -0.70 -14.28 5.03 -445.41 -2.24 -16.52 16 15 C 0.56 14.50 7.74 86.79 0.67 15.17 16 16 O -0.58 -20.74 16.01 -3.88 -0.06 -20.80 16 17 C -0.15 -3.23 5.87 -20.12 -0.12 -3.35 16 18 C -0.08 -1.11 9.54 22.49 0.21 -0.90 16 19 C -0.12 -1.33 10.02 22.27 0.22 -1.11 16 20 C -0.08 -0.99 6.14 -19.50 -0.12 -1.11 16 21 C -0.12 -2.00 6.13 -19.61 -0.12 -2.12 16 22 C -0.07 -1.55 9.59 22.56 0.22 -1.33 16 23 C -0.09 -0.99 6.77 30.52 0.21 -0.78 16 24 C -0.12 -0.80 7.08 31.51 0.22 -0.58 16 25 C -0.08 -0.59 6.77 30.54 0.21 -0.39 16 26 C -0.11 -3.34 5.50 30.62 0.17 -3.17 16 27 C -0.12 -4.54 5.51 30.61 0.17 -4.38 16 28 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 29 H 0.36 16.45 5.66 -92.71 -0.52 15.93 16 30 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 36 H 0.42 5.26 6.64 -92.71 -0.62 4.65 16 37 H 0.16 1.17 6.41 -2.91 -0.02 1.15 16 38 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.11 2.81 7.64 -2.91 -0.02 2.79 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 44 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.47 387.39 1.91 -76.56 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.25 Total: 27.64 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 3.85 Total: -14.37 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -3.53 Total: -117.34 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.31 kcal Total: -78.47 1.91 -76.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026603726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.557 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds