Wall clock time and date at job start Tue Mar 31 2020 16:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46814 * 300.00096 * 3 2 1 6 6 H 1.48497 * 109.47199 * 59.99881 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21555 * 119.99490 * 0.02562 * 15 14 13 17 17 C 1.47835 * 120.00242 * 180.02562 * 15 14 13 18 18 C 1.39495 * 120.04290 * 359.72746 * 17 15 14 19 19 C 1.37932 * 119.77114 * 179.74954 * 18 17 15 20 20 C 1.38256 * 120.09776 * 0.49704 * 19 18 17 21 21 C 1.38620 * 120.52074 * 359.77190 * 20 19 18 22 22 C 1.37972 * 119.93695 * 359.97438 * 21 20 19 23 23 C 1.51349 * 109.83072 * 179.97438 * 22 21 20 24 24 C 1.54357 * 105.15204 * 342.84214 * 23 22 21 25 25 C 1.51402 * 130.30161 * 179.97438 * 21 20 19 26 26 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 27 27 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 28 28 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 31 31 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 33 33 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 34 34 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 35 35 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 36 36 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 37 37 H 1.08004 * 120.11539 * 359.97438 * 18 17 15 38 38 H 1.08002 * 119.95549 * 180.22056 * 19 18 17 39 39 H 1.07998 * 119.74116 * 179.74561 * 20 19 18 40 40 H 1.09001 * 110.30292 * 101.75312 * 23 22 21 41 41 H 1.09001 * 110.31129 * 223.91883 * 23 22 21 42 42 H 1.09002 * 110.82508 * 268.08796 * 24 23 22 43 43 H 1.08998 * 110.99957 * 144.59814 * 24 23 22 44 44 H 1.09005 * 110.30245 * 316.10563 * 25 21 20 45 45 H 1.08997 * 110.30755 * 78.16438 * 25 21 20 46 46 H 1.09000 * 109.47486 * 180.02562 * 26 13 12 47 47 H 1.09002 * 109.46716 * 60.00091 * 26 13 12 48 48 H 1.09002 * 109.47153 * 179.97438 * 27 10 9 49 49 H 1.09001 * 109.47289 * 299.99924 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0500 -6.7954 3.8779 17 6 -2.1956 -6.3515 4.3473 18 6 -3.3546 -5.6720 3.9720 19 6 -4.5050 -5.8152 4.7195 20 6 -4.5061 -6.6214 5.8427 21 6 -3.3574 -7.2959 6.2263 22 6 -2.2018 -7.1651 5.4840 23 6 -1.0969 -7.9931 6.1038 24 6 -1.5757 -8.2944 7.5400 25 6 -3.1110 -8.2223 7.3981 26 6 1.1451 -4.1838 2.2669 27 6 2.4229 -4.0350 1.4385 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0016 30 1 2.9682 -3.5508 -0.5885 31 1 1.7251 -5.6964 -0.6064 32 1 0.9203 -4.4829 -1.6305 33 1 -0.6424 -3.9571 0.2215 34 1 -0.7225 -5.6820 -0.2117 35 1 0.8124 -6.2233 1.6584 36 1 -1.7625 -4.9523 2.1878 37 1 -3.3523 -5.0389 3.0970 38 1 -5.4050 -5.2933 4.4296 39 1 -5.4089 -6.7261 6.4261 40 1 -0.9621 -8.9208 5.5476 41 1 -0.1663 -7.4260 6.1265 42 1 -1.2147 -7.5370 8.2357 43 1 -1.2619 -9.2894 7.8557 44 1 -3.5555 -7.8118 8.3048 45 1 -3.5202 -9.2111 7.1912 46 1 1.4055 -4.4534 3.2905 47 1 0.6001 -3.2398 2.2669 48 1 2.9675 -4.9792 1.4386 49 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026611527.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:33 Heat of formation + Delta-G solvation = -18.544785 kcal Electronic energy + Delta-G solvation = -28010.821238 eV Core-core repulsion = 24322.589877 eV Total energy + Delta-G solvation = -3688.231361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71437 -39.33447 -37.82460 -35.92146 -34.56996 -32.85888 -31.78307 -30.27896 -30.17443 -29.21737 -27.98707 -27.08690 -24.10855 -23.48541 -22.19589 -21.85908 -21.41466 -20.82949 -20.03297 -18.57276 -17.31365 -17.18918 -16.38721 -15.95000 -15.62661 -15.27029 -15.00045 -14.65848 -14.47675 -14.31745 -13.81165 -13.51297 -13.42349 -13.31255 -13.00821 -12.91293 -12.63931 -12.25729 -12.02368 -11.89770 -11.74011 -11.63554 -11.50881 -11.42486 -11.31497 -11.08056 -10.92286 -10.79912 -10.67138 -10.32011 -10.12476 -10.03465 -9.73897 -9.54811 -9.50484 -9.07987 -8.86628 -8.74484 -8.66911 -6.91805 -5.75874 -3.02652 0.74025 1.14628 2.88244 3.28823 3.43620 3.50041 3.51539 3.73274 4.16772 4.36478 4.61184 4.64973 4.74313 4.81816 4.88519 4.98850 5.11231 5.24806 5.25569 5.29962 5.46360 5.48031 5.55433 5.59163 5.63794 5.69195 5.74112 5.81611 5.84505 5.87347 5.97268 6.01020 6.02122 6.07226 6.13418 6.14014 6.19944 6.24321 6.36036 6.38789 6.52988 6.65882 6.69347 6.71194 6.81588 6.93939 7.07165 7.12269 7.67171 7.73317 8.34778 8.43975 9.55308 10.14053 10.48952 11.47214 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002704 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.837826 B =10353.881234 C =10914.850830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.718 5.718 15 C 0.555 3.445 16 O -0.537 6.537 17 C -0.122 4.122 18 C -0.086 4.086 19 C -0.128 4.128 20 C -0.085 4.085 21 C -0.112 4.112 22 C -0.034 4.034 23 C -0.080 4.080 24 C -0.124 4.124 25 C -0.080 4.080 26 C -0.118 4.118 27 C -0.130 4.130 28 H 0.253 0.747 29 H 0.383 0.617 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.398 0.602 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -17.736 11.128 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.161 4.161 13 C 0.047 3.953 14 N -0.368 5.368 15 C 0.343 3.657 16 O -0.416 6.416 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.035 4.035 23 C -0.117 4.117 24 C -0.161 4.161 25 C -0.117 4.117 26 C -0.156 4.156 27 C -0.171 4.171 28 H 0.063 0.937 29 H 0.218 0.782 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.063 0.937 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.288 -18.013 11.327 22.836 hybrid contribution -0.420 1.426 -0.153 1.495 sum -8.708 -16.587 11.174 21.813 Atomic orbital electron populations 1.69651 1.05036 1.25371 1.58345 1.24696 0.95495 0.97543 1.03389 0.86159 0.78834 0.84386 0.77097 1.20634 1.22002 1.22017 1.19309 0.91041 0.84222 1.41791 0.91225 1.42476 1.05679 0.99635 1.88476 1.20257 0.94296 0.86412 0.92913 1.21721 0.95786 0.98905 0.99189 1.21744 0.98917 1.01895 0.93589 1.21067 0.84644 0.99623 0.90002 1.46104 1.14963 1.48295 1.27442 1.18263 0.87780 0.79076 0.80615 1.90732 1.34249 1.47281 1.69314 1.19642 0.94298 1.01264 0.97265 1.21287 0.92054 0.97708 0.99414 1.20985 0.98347 0.99730 0.95535 1.20805 0.97262 0.95816 0.96492 1.20626 0.93595 0.98995 0.97973 1.20592 0.96011 0.94259 0.92609 1.21103 0.97359 0.99191 0.94053 1.22366 0.94484 1.02256 0.97033 1.21053 0.96897 0.98145 0.95608 1.21740 0.96938 0.98800 0.98167 1.22097 0.96423 0.99647 0.98884 0.93710 0.78223 0.93370 0.92317 0.91487 0.90483 0.92394 0.90068 0.76714 0.85213 0.85165 0.85918 0.89873 0.89153 0.90929 0.90459 0.90694 0.90198 0.93147 0.90431 0.93696 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -6.31 9.93 -15.06 -0.15 -6.46 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.25 4.28 -53.42 -0.23 -17.48 16 10 C 0.17 3.32 3.10 -67.93 -0.21 3.11 16 11 C -0.12 -1.87 5.61 -26.73 -0.15 -2.02 16 12 C -0.12 -1.86 5.22 -26.73 -0.14 -2.00 16 13 C 0.15 2.35 2.45 -67.93 -0.17 2.18 16 14 N -0.72 -10.19 5.03 -54.75 -0.28 -10.46 16 15 C 0.56 8.49 7.74 -12.33 -0.10 8.39 16 16 O -0.54 -9.62 14.37 5.32 0.08 -9.54 16 17 C -0.12 -1.60 5.88 -104.93 -0.62 -2.22 16 18 C -0.09 -0.94 9.54 -39.23 -0.37 -1.31 16 19 C -0.13 -1.20 10.03 -39.69 -0.40 -1.60 16 20 C -0.09 -0.79 10.03 -39.43 -0.40 -1.18 16 21 C -0.11 -1.15 6.13 -104.23 -0.64 -1.79 16 22 C -0.03 -0.42 6.03 -103.83 -0.63 -1.04 16 23 C -0.08 -0.91 5.58 -26.85 -0.15 -1.06 16 24 C -0.12 -1.03 7.08 -25.31 -0.18 -1.21 16 25 C -0.08 -0.63 6.77 -26.83 -0.18 -0.81 16 26 C -0.12 -2.13 5.34 -26.73 -0.14 -2.27 16 27 C -0.13 -2.38 5.61 -26.73 -0.15 -2.53 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.38 9.60 6.06 -40.82 -0.25 9.36 16 30 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.30 6.51 -51.93 -0.34 0.96 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 36 H 0.40 4.84 6.63 -40.82 -0.27 4.57 16 37 H 0.13 1.20 6.40 -52.48 -0.34 0.86 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.19 7.19 -51.93 -0.37 0.82 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.08 1.61 7.60 -51.93 -0.39 1.22 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -31.64 383.02 -11.63 -43.27 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -7.81 Total: 12.37 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.86 Total: -14.37 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.22 Total: -54.82 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.64 -11.63 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026611527.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.730 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds