Wall clock time and date at job start Tue Mar 31 2020 16:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00267 * 2 1 4 4 H 1.48501 * 109.47326 * 240.00215 * 3 2 1 5 5 H 1.48493 * 109.46795 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46856 * 120.00174 * 3 2 1 7 7 C 1.38817 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64694 * 343.72927 * 9 7 2 11 11 C 1.54908 * 104.83117 * 204.15159 * 10 9 7 12 12 C 1.55153 * 101.58357 * 322.99233 * 11 10 9 13 13 C 1.47024 * 125.64955 * 163.76067 * 9 7 2 14 14 H 1.09000 * 110.01049 * 59.42537 * 13 9 7 15 15 C 1.52999 * 109.88051 * 298.33439 * 13 9 7 16 16 N 1.46503 * 109.47299 * 177.18233 * 15 13 9 17 17 C 1.34773 * 119.99937 * 184.48646 * 16 15 13 18 18 O 1.21546 * 120.00481 * 359.97438 * 17 16 15 19 19 C 1.47853 * 119.99588 * 179.97438 * 17 16 15 20 20 C 1.39320 * 119.88168 * 6.19249 * 19 17 16 21 21 C 1.37935 * 119.60419 * 179.75069 * 20 19 17 22 22 C 1.38084 * 119.93366 * 0.32589 * 21 20 19 23 23 C 1.39024 * 120.86418 * 359.97438 * 22 21 20 24 24 C 1.37422 * 119.75838 * 359.84257 * 23 22 21 25 25 C 1.50610 * 122.64133 * 180.29509 * 24 23 22 26 26 C 1.52740 * 110.59784 * 342.43740 * 25 24 23 27 27 C 1.53334 * 108.34856 * 51.01489 * 26 25 24 28 28 C 1.50649 * 117.69764 * 179.70293 * 23 22 21 29 29 H 0.97007 * 119.99779 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36441 * 85.31102 * 10 9 7 31 31 H 1.09002 * 110.45926 * 323.03892 * 10 9 7 32 32 H 1.08998 * 111.00496 * 204.91364 * 11 10 9 33 33 H 1.09001 * 111.00125 * 81.07119 * 11 10 9 34 34 H 1.09002 * 110.72030 * 277.13793 * 12 11 10 35 35 H 1.09002 * 110.71829 * 153.86703 * 12 11 10 36 36 H 1.08998 * 109.47504 * 57.17935 * 15 13 9 37 37 H 1.09002 * 109.47144 * 297.18006 * 15 13 9 38 38 H 0.96996 * 119.99754 * 4.48280 * 16 15 13 39 39 H 1.08005 * 120.19256 * 0.02562 * 20 19 17 40 40 H 1.08004 * 120.03404 * 180.34682 * 21 20 19 41 41 H 1.08000 * 119.56980 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.25359 * 102.72710 * 25 24 23 43 43 H 1.09003 * 109.25165 * 222.15111 * 25 24 23 44 44 H 1.09001 * 109.68700 * 170.72597 * 26 25 24 45 45 H 1.08995 * 109.68672 * 291.26172 * 26 25 24 46 46 H 1.08997 * 109.68782 * 49.86485 * 27 26 25 47 47 H 1.08998 * 109.68762 * 170.39623 * 27 26 25 48 48 H 1.09006 * 109.24834 * 42.24232 * 28 23 22 49 49 H 1.09005 * 109.22169 * 282.80288 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1002 -2.5573 0.3334 11 6 -0.2283 -4.0328 0.7877 12 6 0.7606 -4.7421 -0.1747 13 6 1.8905 -3.7035 -0.3364 14 1 2.7112 -3.9402 0.3407 15 6 2.3926 -3.7015 -1.7816 16 7 3.0140 -4.9932 -2.0845 17 6 3.6111 -5.1908 -3.2765 18 8 3.6336 -4.2975 -4.1005 19 6 4.2386 -6.4942 -3.5819 20 6 4.1005 -7.5567 -2.6914 21 6 4.6840 -8.7717 -2.9845 22 6 5.4053 -8.9260 -4.1518 23 6 5.5538 -7.8696 -5.0433 24 6 4.9741 -6.6552 -4.7645 25 6 5.0878 -5.4699 -5.6867 26 6 6.2363 -5.6658 -6.6745 27 6 6.0741 -7.0391 -7.3371 28 6 6.3608 -8.1148 -6.2915 29 1 -0.4850 0.8401 0.0004 30 1 -0.7203 -2.3754 -0.5444 31 1 -0.3837 -1.8850 1.1432 32 1 -1.2447 -4.3992 0.6433 33 1 0.0840 -4.1505 1.8253 34 1 0.2851 -4.9471 -1.1339 35 1 1.1418 -5.6603 0.2721 36 1 3.1268 -2.9062 -1.9102 37 1 1.5539 -3.5345 -2.4574 38 1 2.9957 -5.7062 -1.4271 39 1 3.5360 -7.4310 -1.7792 40 1 4.5766 -9.6017 -2.3018 41 1 5.8593 -9.8800 -4.3756 42 1 4.1552 -5.3530 -6.2386 43 1 5.2706 -4.5717 -5.0967 44 1 6.2041 -4.8853 -7.4346 45 1 7.1877 -5.6233 -6.1444 46 1 5.0550 -7.1499 -7.7077 47 1 6.7778 -7.1332 -8.1641 48 1 6.1022 -9.0916 -6.7005 49 1 7.4218 -8.0994 -6.0417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027903633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:32 Heat of formation + Delta-G solvation = -2.886808 kcal Electronic energy + Delta-G solvation = -28012.848847 eV Core-core repulsion = 24325.296467 eV Total energy + Delta-G solvation = -3687.552380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67210 -38.85210 -37.55685 -36.25021 -34.28347 -32.60373 -32.46522 -30.43386 -29.91032 -29.28151 -28.22352 -25.07138 -24.33974 -23.80003 -22.94888 -22.57804 -20.56747 -20.11054 -19.48250 -19.31747 -17.49713 -16.64513 -16.25306 -15.85081 -15.49667 -15.26973 -15.05372 -14.65504 -14.43824 -14.09491 -13.94585 -13.79676 -13.62921 -13.34564 -12.82998 -12.70761 -12.58841 -12.22433 -12.08890 -11.92805 -11.87976 -11.71997 -11.62067 -11.33356 -10.96335 -10.95657 -10.86385 -10.77467 -10.46311 -10.21925 -10.12536 -9.91592 -9.85064 -9.73351 -9.28753 -9.01465 -8.74278 -8.61705 -8.50631 -6.83077 -5.77806 -3.14701 0.78918 1.20897 2.97260 3.39238 3.44625 3.45709 3.48053 3.78405 4.41156 4.48119 4.52509 4.70163 4.76860 4.83126 4.92159 5.04642 5.09976 5.23059 5.32947 5.38687 5.40626 5.47433 5.49394 5.61403 5.64278 5.66228 5.69037 5.79739 5.80075 5.89952 5.98257 6.04863 6.12428 6.18595 6.19783 6.22646 6.25884 6.29881 6.45249 6.52919 6.56213 6.62488 6.71959 6.79610 6.82487 7.05826 7.49102 7.60973 7.77947 7.80317 8.25006 8.48806 9.16916 9.77374 10.45309 11.34611 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002896 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.198517 B = 9664.845031 C =10984.315673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 0.910 3.090 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.718 5.718 17 C 0.547 3.453 18 O -0.533 6.533 19 C -0.133 4.133 20 C -0.088 4.088 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.091 4.091 24 C -0.015 4.015 25 C -0.085 4.085 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.255 0.745 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -20.227 -8.374 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.740 3.260 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.369 5.369 17 C 0.334 3.666 18 O -0.411 6.411 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.016 4.016 25 C -0.121 4.121 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.114 4.114 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.228 0.772 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.568 -19.278 -8.917 23.296 hybrid contribution 0.349 0.428 0.388 0.675 sum 9.916 -18.850 -8.529 22.944 Atomic orbital electron populations 1.69927 1.05048 1.25484 1.55582 1.24940 0.95666 0.97891 1.01197 0.86235 0.78631 0.83055 0.78073 1.20883 1.21549 1.21051 1.18928 0.90344 0.82161 1.44999 0.90767 1.44454 1.07339 1.01367 1.78048 1.21423 0.85028 0.89942 0.98765 1.22999 0.97655 0.99670 0.98367 1.22624 0.97283 0.96992 0.99684 1.21136 0.94614 0.88199 0.91746 0.94515 1.22255 0.97489 0.82975 0.98787 1.46099 1.57184 1.17181 1.16452 1.18290 0.78792 0.87140 0.82342 1.90743 1.58682 1.44707 1.47000 1.20095 1.02466 0.94467 0.96572 1.21259 0.98319 0.92726 0.98351 1.20965 0.99018 0.97420 0.97650 1.21313 0.98037 0.98414 0.93986 1.19591 0.99704 0.92783 0.97056 1.19753 0.93618 0.94717 0.93520 1.20791 0.98865 0.96310 0.96167 1.21669 0.98995 0.96867 0.98660 1.21574 1.02040 0.94898 0.97384 1.20451 0.99059 0.99408 0.92483 0.93527 0.95452 0.91283 0.92317 0.92298 0.91763 0.92443 0.91044 0.91853 0.77196 0.85587 0.85549 0.85965 0.89958 0.87940 0.91372 0.91916 0.91606 0.91598 0.90858 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 10.64 55.49 0.59 -26.06 16 2 C 0.00 0.02 5.47 -17.43 -0.10 -0.08 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.48 9.74 -15.06 -0.15 -6.63 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.59 -14.58 3.13 -162.57 -0.51 -15.09 16 10 C 0.17 4.11 5.39 -2.53 -0.01 4.10 16 11 C -0.15 -2.69 7.08 -24.59 -0.17 -2.86 16 12 C -0.13 -2.10 5.99 -24.90 -0.15 -2.25 16 13 C 0.15 2.99 3.24 -66.95 -0.22 2.77 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.14 5.07 -4.04 -0.02 2.12 16 16 N -0.72 -11.17 5.33 -61.25 -0.33 -11.49 16 17 C 0.55 9.01 7.67 -12.33 -0.09 8.92 16 18 O -0.53 -10.48 13.09 5.33 0.07 -10.41 16 19 C -0.13 -1.80 5.88 -104.83 -0.62 -2.42 16 20 C -0.09 -0.95 9.52 -39.29 -0.37 -1.32 16 21 C -0.13 -1.21 10.03 -39.75 -0.40 -1.61 16 22 C -0.10 -0.90 9.60 -39.35 -0.38 -1.28 16 23 C -0.09 -0.96 5.73 -104.65 -0.60 -1.56 16 24 C -0.02 -0.19 5.77 -104.23 -0.60 -0.80 16 25 C -0.08 -1.11 4.18 -28.06 -0.12 -1.23 16 26 C -0.12 -1.26 5.98 -26.69 -0.16 -1.41 16 27 C -0.12 -1.02 5.98 -26.69 -0.16 -1.18 16 28 C -0.08 -0.62 5.67 -28.04 -0.16 -0.78 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.03 0.71 8.02 -51.93 -0.42 0.29 16 31 H 0.07 1.82 7.05 -51.93 -0.37 1.45 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.05 7.80 -51.93 -0.41 0.64 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.59 7.91 -51.93 -0.41 1.18 16 37 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.39 4.92 6.23 -40.82 -0.25 4.66 16 39 H 0.13 1.11 6.43 -52.48 -0.34 0.77 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.80 8.05 -52.49 -0.42 0.38 16 42 H 0.08 1.16 7.98 -51.93 -0.41 0.74 16 43 H 0.10 1.60 6.05 -51.93 -0.31 1.28 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 46 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -31.52 380.17 -11.90 -43.42 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.95 Total: 4.25 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -4.47 Total: -7.50 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.24 Total: -52.64 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.52 -11.90 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027903633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.534 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds