Wall clock time and date at job start Tue Mar 31 2020 16:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00267 * 2 1 4 4 H 1.48501 * 109.47326 * 240.00215 * 3 2 1 5 5 H 1.48493 * 109.46795 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46856 * 120.00174 * 3 2 1 7 7 C 1.38817 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64694 * 343.72927 * 9 7 2 11 11 C 1.54908 * 104.83117 * 204.15159 * 10 9 7 12 12 C 1.55153 * 101.58357 * 322.99233 * 11 10 9 13 13 C 1.47024 * 125.64955 * 163.76067 * 9 7 2 14 14 H 1.09000 * 110.01049 * 59.42537 * 13 9 7 15 15 C 1.52999 * 109.88051 * 298.33439 * 13 9 7 16 16 N 1.46503 * 109.47299 * 177.18233 * 15 13 9 17 17 C 1.34773 * 119.99937 * 184.48646 * 16 15 13 18 18 O 1.21546 * 120.00481 * 359.97438 * 17 16 15 19 19 C 1.47853 * 119.99588 * 179.97438 * 17 16 15 20 20 C 1.39320 * 119.88168 * 6.19249 * 19 17 16 21 21 C 1.37935 * 119.60419 * 179.75069 * 20 19 17 22 22 C 1.38084 * 119.93366 * 0.32589 * 21 20 19 23 23 C 1.39024 * 120.86418 * 359.97438 * 22 21 20 24 24 C 1.37422 * 119.75838 * 359.84257 * 23 22 21 25 25 C 1.50610 * 122.64133 * 180.29509 * 24 23 22 26 26 C 1.52740 * 110.59784 * 342.43740 * 25 24 23 27 27 C 1.53334 * 108.34856 * 51.01489 * 26 25 24 28 28 C 1.50649 * 117.69764 * 179.70293 * 23 22 21 29 29 H 0.97007 * 119.99779 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36441 * 85.31102 * 10 9 7 31 31 H 1.09002 * 110.45926 * 323.03892 * 10 9 7 32 32 H 1.08998 * 111.00496 * 204.91364 * 11 10 9 33 33 H 1.09001 * 111.00125 * 81.07119 * 11 10 9 34 34 H 1.09002 * 110.72030 * 277.13793 * 12 11 10 35 35 H 1.09002 * 110.71829 * 153.86703 * 12 11 10 36 36 H 1.08998 * 109.47504 * 57.17935 * 15 13 9 37 37 H 1.09002 * 109.47144 * 297.18006 * 15 13 9 38 38 H 0.96996 * 119.99754 * 4.48280 * 16 15 13 39 39 H 1.08005 * 120.19256 * 0.02562 * 20 19 17 40 40 H 1.08004 * 120.03404 * 180.34682 * 21 20 19 41 41 H 1.08000 * 119.56980 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.25359 * 102.72710 * 25 24 23 43 43 H 1.09003 * 109.25165 * 222.15111 * 25 24 23 44 44 H 1.09001 * 109.68700 * 170.72597 * 26 25 24 45 45 H 1.08995 * 109.68672 * 291.26172 * 26 25 24 46 46 H 1.08997 * 109.68782 * 49.86485 * 27 26 25 47 47 H 1.08998 * 109.68762 * 170.39623 * 27 26 25 48 48 H 1.09006 * 109.24834 * 42.24232 * 28 23 22 49 49 H 1.09005 * 109.22169 * 282.80288 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1002 -2.5573 0.3334 11 6 -0.2283 -4.0328 0.7877 12 6 0.7606 -4.7421 -0.1747 13 6 1.8905 -3.7035 -0.3364 14 1 2.7112 -3.9402 0.3407 15 6 2.3926 -3.7015 -1.7816 16 7 3.0140 -4.9932 -2.0845 17 6 3.6111 -5.1908 -3.2765 18 8 3.6336 -4.2975 -4.1005 19 6 4.2386 -6.4942 -3.5819 20 6 4.1005 -7.5567 -2.6914 21 6 4.6840 -8.7717 -2.9845 22 6 5.4053 -8.9260 -4.1518 23 6 5.5538 -7.8696 -5.0433 24 6 4.9741 -6.6552 -4.7645 25 6 5.0878 -5.4699 -5.6867 26 6 6.2363 -5.6658 -6.6745 27 6 6.0741 -7.0391 -7.3371 28 6 6.3608 -8.1148 -6.2915 29 1 -0.4850 0.8401 0.0004 30 1 -0.7203 -2.3754 -0.5444 31 1 -0.3837 -1.8850 1.1432 32 1 -1.2447 -4.3992 0.6433 33 1 0.0840 -4.1505 1.8253 34 1 0.2851 -4.9471 -1.1339 35 1 1.1418 -5.6603 0.2721 36 1 3.1268 -2.9062 -1.9102 37 1 1.5539 -3.5345 -2.4574 38 1 2.9957 -5.7062 -1.4271 39 1 3.5360 -7.4310 -1.7792 40 1 4.5766 -9.6017 -2.3018 41 1 5.8593 -9.8800 -4.3756 42 1 4.1552 -5.3530 -6.2386 43 1 5.2706 -4.5717 -5.0967 44 1 6.2041 -4.8853 -7.4346 45 1 7.1877 -5.6233 -6.1444 46 1 5.0550 -7.1499 -7.7077 47 1 6.7778 -7.1332 -8.1641 48 1 6.1022 -9.0916 -6.7005 49 1 7.4218 -8.0994 -6.0417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027903633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:31 Heat of formation + Delta-G solvation = -20.739496 kcal Electronic energy + Delta-G solvation = -28013.622997 eV Core-core repulsion = 24325.296467 eV Total energy + Delta-G solvation = -3688.326530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68841 -40.08775 -39.14275 -37.07041 -35.77832 -34.43232 -33.46828 -31.54510 -31.18587 -30.76816 -29.45607 -26.78686 -25.92219 -24.77368 -23.95063 -23.48005 -22.10715 -21.49153 -21.09939 -20.17706 -18.95106 -18.26647 -17.48039 -16.93621 -16.68105 -16.57118 -16.26869 -16.00907 -15.76813 -15.69638 -15.07975 -14.84688 -14.64824 -14.57285 -14.13321 -13.92548 -13.68260 -13.61568 -13.44244 -13.35639 -13.03152 -12.94550 -12.85910 -12.70273 -12.62831 -12.41612 -12.07669 -11.91308 -11.76655 -11.73011 -11.70576 -11.50812 -11.41344 -11.21761 -10.69846 -10.53286 -10.20033 -9.70028 -9.51308 -8.86948 -7.91935 -5.29717 -0.11182 0.41715 1.41641 1.45326 1.50896 1.87005 2.11804 2.47663 2.84615 3.28107 3.60726 3.68881 3.74463 3.80028 3.94695 3.97024 4.03415 4.06920 4.19075 4.23584 4.26791 4.38924 4.41608 4.49189 4.53476 4.63880 4.69299 4.71548 4.87416 4.93733 4.94975 4.96487 4.98693 5.05672 5.11557 5.12498 5.17249 5.22375 5.27913 5.38797 5.41632 5.43198 5.43594 5.52863 5.55398 5.64142 5.71551 5.76098 6.00536 6.20575 6.55896 7.06631 7.22279 7.73394 8.39766 9.19251 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.002896 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.198517 B = 9664.845031 C =10984.315673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.050 0.950 15 C 0.132 3.868 16 N -0.703 5.703 17 C 0.542 3.458 18 O -0.577 6.577 19 C -0.159 4.159 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.097 4.097 24 C -0.040 4.040 25 C -0.080 4.080 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.076 4.076 29 H 0.249 0.751 30 H -0.008 1.008 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.412 0.588 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 -24.847 -7.896 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.356 5.356 17 C 0.331 3.669 18 O -0.459 6.459 19 C -0.162 4.162 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.097 4.097 24 C -0.041 4.041 25 C -0.117 4.117 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.251 0.749 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.176 0.824 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.332 -23.960 -8.418 27.810 hybrid contribution -0.137 1.781 0.207 1.798 sum 11.195 -22.180 -8.211 26.166 Atomic orbital electron populations 1.70125 1.06264 1.25563 1.57163 1.25704 0.96521 1.01002 1.01886 0.85275 0.77402 0.79245 0.78181 1.20989 1.21715 1.19820 1.19231 0.90629 0.83694 1.43752 0.90899 1.44721 1.07824 1.02430 1.78474 1.21251 0.84161 0.93473 0.96203 1.22864 0.99800 0.95128 0.99259 1.22622 0.95281 0.97455 0.99822 1.21339 0.96269 0.87018 0.91290 0.93232 1.21684 0.95487 0.83980 0.98333 1.45780 1.56780 1.16097 1.16965 1.18941 0.78110 0.88121 0.81697 1.90730 1.60244 1.46558 1.48350 1.19941 1.04309 0.93553 0.98386 1.21522 0.98330 0.92501 0.98298 1.21405 0.97524 0.97434 0.98065 1.21777 0.96771 0.99137 0.93142 1.19917 0.99288 0.92019 0.98435 1.19852 0.95072 0.95598 0.93539 1.20594 0.98993 0.95665 0.96472 1.21648 0.97656 0.98559 0.98042 1.21566 1.02243 0.93624 0.98138 1.20542 0.99411 1.00143 0.91182 0.94220 0.98946 0.94831 0.89762 0.90965 0.91590 0.87439 0.94909 0.94731 0.74945 0.83626 0.82018 0.82427 0.92347 0.91616 0.91369 0.91591 0.92425 0.89366 0.88459 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 10.64 21.65 0.23 -57.48 16 2 C -0.06 -3.32 5.47 84.86 0.46 -2.86 16 3 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 4 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.24 -13.92 9.74 84.04 0.82 -13.10 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.61 -31.18 3.13 -668.26 -2.09 -33.27 16 10 C 0.17 8.53 5.39 86.85 0.47 9.00 16 11 C -0.13 -4.53 7.08 31.98 0.23 -4.30 16 12 C -0.11 -3.44 5.99 31.78 0.19 -3.25 16 13 C 0.15 5.80 3.24 45.34 0.15 5.95 16 14 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.13 5.36 5.07 86.38 0.44 5.79 16 16 N -0.70 -21.99 5.33 -465.97 -2.49 -24.47 16 17 C 0.54 18.64 7.67 86.79 0.67 19.31 16 18 O -0.58 -24.80 13.09 -3.86 -0.05 -24.86 16 19 C -0.16 -4.25 5.88 -20.00 -0.12 -4.37 16 20 C -0.09 -1.64 9.52 22.46 0.21 -1.42 16 21 C -0.13 -1.72 10.03 22.16 0.22 -1.50 16 22 C -0.09 -1.23 9.60 22.42 0.22 -1.01 16 23 C -0.10 -1.77 5.73 -19.88 -0.11 -1.89 16 24 C -0.04 -1.02 5.77 -19.61 -0.11 -1.13 16 25 C -0.08 -2.28 4.18 29.73 0.12 -2.16 16 26 C -0.12 -2.49 5.98 30.62 0.18 -2.31 16 27 C -0.12 -1.78 5.98 30.62 0.18 -1.60 16 28 C -0.08 -0.98 5.67 29.74 0.17 -0.81 16 29 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 30 H -0.01 -0.41 8.02 -2.39 -0.02 -0.43 16 31 H 0.03 1.85 7.05 -2.39 -0.02 1.83 16 32 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.00 7.80 -2.39 -0.02 1.99 16 35 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.03 1.57 7.91 -2.39 -0.02 1.55 16 37 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 38 H 0.41 9.47 6.23 -92.71 -0.58 8.89 16 39 H 0.15 2.00 6.43 -2.91 -0.02 1.98 16 40 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 41 H 0.16 1.06 8.05 -2.91 -0.02 1.04 16 42 H 0.06 1.85 7.98 -2.39 -0.02 1.83 16 43 H 0.07 2.31 6.05 -2.39 -0.01 2.29 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 46 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.10 0.83 8.13 -2.38 -0.02 0.81 16 49 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -76.43 380.17 2.38 -74.05 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.36 Total: 18.41 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.38 Total: -1.66 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.34 Total: -115.23 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -76.43 2.38 -74.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027903633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.310 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds