Wall clock time and date at job start Tue Mar 31 2020 16:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48509 * 109.46780 * 271.09122 * 3 2 1 5 5 H 1.48495 * 109.47023 * 31.08803 * 3 2 1 6 6 H 1.48497 * 109.47249 * 151.09010 * 3 2 1 7 7 C 1.38808 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00303 * 338.99363 * 7 2 1 9 9 N 1.36937 * 119.99934 * 159.00096 * 7 2 1 10 10 C 1.47427 * 125.64946 * 324.73699 * 9 7 2 11 11 C 1.54906 * 104.83057 * 155.89314 * 10 9 7 12 12 C 1.55159 * 101.58367 * 37.01502 * 11 10 9 13 13 C 1.47026 * 125.65055 * 144.76985 * 9 7 2 14 14 H 1.09003 * 110.00790 * 300.52612 * 13 9 7 15 15 C 1.53001 * 109.88229 * 61.61698 * 13 9 7 16 16 N 1.46503 * 109.46968 * 295.31353 * 15 13 9 17 17 C 1.34779 * 119.99391 * 173.41497 * 16 15 13 18 18 O 1.21551 * 120.00420 * 0.02562 * 17 16 15 19 19 C 1.47846 * 119.99594 * 180.02562 * 17 16 15 20 20 C 1.39327 * 119.88331 * 5.51620 * 19 17 16 21 21 C 1.37941 * 119.60883 * 180.02562 * 20 19 17 22 22 C 1.38085 * 119.93073 * 0.12192 * 21 20 19 23 23 C 1.39024 * 120.86568 * 359.97438 * 22 21 20 24 24 C 1.37431 * 119.75460 * 359.78242 * 23 22 21 25 25 C 1.50615 * 122.63140 * 180.68093 * 24 23 22 26 26 C 1.52738 * 110.58762 * 342.18693 * 25 24 23 27 27 C 1.53235 * 108.34841 * 51.07368 * 26 25 24 28 28 C 1.50648 * 117.70129 * 179.71059 * 23 22 21 29 29 H 0.96996 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.36136 * 37.05835 * 10 9 7 31 31 H 1.08993 * 110.46697 * 274.78285 * 10 9 7 32 32 H 1.09005 * 111.00808 * 278.93833 * 11 10 9 33 33 H 1.08999 * 111.00109 * 155.09049 * 11 10 9 34 34 H 1.08995 * 110.72010 * 206.13359 * 12 11 10 35 35 H 1.08997 * 110.72133 * 82.85830 * 12 11 10 36 36 H 1.09006 * 109.46826 * 175.31450 * 15 13 9 37 37 H 1.08993 * 109.46983 * 55.31879 * 15 13 9 38 38 H 0.96991 * 120.00348 * 353.41787 * 16 15 13 39 39 H 1.08001 * 120.19082 * 0.02562 * 20 19 17 40 40 H 1.08002 * 120.03169 * 180.17446 * 21 20 19 41 41 H 1.08001 * 119.57112 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.25564 * 102.47374 * 25 24 23 43 43 H 1.09000 * 109.25026 * 221.94190 * 25 24 23 44 44 H 1.09003 * 109.68735 * 170.80687 * 26 25 24 45 45 H 1.09007 * 109.68895 * 291.33581 * 26 25 24 46 46 H 1.09000 * 109.63118 * 170.46957 * 27 26 25 47 47 H 1.09003 * 109.67965 * 49.94852 * 27 26 25 48 48 H 1.09008 * 109.24589 * 282.59072 * 28 23 22 49 49 H 1.08993 * 109.25163 * 42.04870 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4747 2.0597 -1.3999 5 1 1.4595 2.6459 0.7229 6 1 3.5592 1.4336 0.6768 7 6 2.0102 -1.2021 -0.0005 8 1 1.5241 -2.1065 0.3343 9 7 3.3114 -1.2414 -0.4255 10 6 3.8851 -0.4276 -1.5128 11 6 5.4010 -0.3616 -1.2011 12 6 5.6667 -1.7849 -0.6434 13 6 4.3675 -2.1025 0.1264 14 1 4.5042 -1.8918 1.1871 15 6 3.9940 -3.5735 -0.0678 16 7 2.7936 -3.8798 0.7143 17 6 2.2006 -5.0842 0.5944 18 8 2.6619 -5.9163 -0.1621 19 6 0.9888 -5.3931 1.3831 20 6 0.3955 -4.4014 2.1614 21 6 -0.7346 -4.6960 2.8954 22 6 -1.2686 -5.9689 2.8572 23 6 -0.6823 -6.9654 2.0851 24 6 0.4410 -6.6829 1.3454 25 6 1.1196 -7.7083 0.4755 26 6 0.6852 -9.1187 0.8691 27 6 -0.8462 -9.1583 0.9087 28 6 -1.3202 -8.3300 2.1011 29 1 -0.4850 0.8400 0.0004 30 1 3.4525 0.5729 -1.5065 31 1 3.7166 -0.9068 -2.4771 32 1 5.6125 0.3985 -0.4490 33 1 5.9788 -0.1830 -2.1079 34 1 6.5233 -1.7813 0.0306 35 1 5.8170 -2.4956 -1.4560 36 1 4.8171 -4.2046 0.2676 37 1 3.7982 -3.7623 -1.1232 38 1 2.4257 -3.2160 1.3181 39 1 0.8180 -3.4078 2.1896 40 1 -1.2017 -3.9317 3.4988 41 1 -2.1533 -6.1933 3.4345 42 1 0.8545 -7.5280 -0.5662 43 1 2.1998 -7.6199 0.5919 44 1 1.0525 -9.8346 0.1338 45 1 1.0848 -9.3650 1.8529 46 1 -1.1831 -10.1888 1.0204 47 1 -1.2482 -8.7379 -0.0132 48 1 -1.0498 -8.8423 3.0245 49 1 -2.4036 -8.2208 2.0547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027903634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:36 Heat of formation + Delta-G solvation = 5.472704 kcal Electronic energy + Delta-G solvation = -28769.923747 eV Core-core repulsion = 25082.733862 eV Total energy + Delta-G solvation = -3687.189884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.37237 -38.74173 -37.71312 -35.96749 -34.03732 -32.70250 -32.28524 -30.16154 -30.00596 -29.75519 -28.39621 -25.13397 -24.16950 -23.55398 -22.67392 -22.36105 -20.90257 -20.05287 -19.50452 -19.02947 -17.53159 -16.37610 -16.16426 -15.93874 -15.47040 -15.19165 -14.84912 -14.78172 -14.41095 -13.97440 -13.73250 -13.60384 -13.53218 -13.14129 -12.83176 -12.53462 -12.48802 -12.35670 -12.22753 -11.96453 -11.85442 -11.55416 -11.38305 -11.32240 -11.30413 -10.95820 -10.78070 -10.76352 -10.62230 -10.47108 -10.23258 -10.19226 -9.87267 -9.61355 -9.02399 -8.68779 -8.58305 -8.38318 -8.23558 -6.89208 -6.07530 -3.49485 1.14887 1.58800 3.26688 3.28043 3.41018 3.46256 3.76180 4.12802 4.46165 4.68703 4.78149 4.88022 4.95075 5.05858 5.11396 5.17692 5.25002 5.29980 5.32191 5.41847 5.43696 5.50642 5.56278 5.62495 5.69019 5.81117 5.86344 5.91943 5.93539 6.03585 6.06183 6.09360 6.10565 6.12160 6.24910 6.24995 6.32437 6.37020 6.38247 6.46501 6.59534 6.60159 6.67960 6.83271 6.83798 6.87284 7.08672 7.14030 7.81420 8.13154 8.24896 8.72719 8.77964 9.58108 10.17738 11.06609 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003703 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.450215 B = 7559.510772 C = 8880.439150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.037 3.963 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.090 0.910 9 N -0.600 5.600 10 C 0.115 3.885 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.047 0.953 15 C 0.117 3.883 16 N -0.703 5.703 17 C 0.552 3.448 18 O -0.552 6.552 19 C -0.135 4.135 20 C -0.074 4.074 21 C -0.129 4.129 22 C -0.099 4.099 23 C -0.099 4.099 24 C -0.018 4.018 25 C -0.082 4.082 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.074 4.074 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.410 0.590 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -12.478 4.983 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.164 4.164 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.107 0.893 9 N -0.326 5.326 10 C -0.009 4.009 11 C -0.175 4.175 12 C -0.159 4.159 13 C 0.034 3.966 14 H 0.065 0.935 15 C -0.009 4.009 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.433 6.433 19 C -0.138 4.138 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.117 4.117 23 C -0.099 4.099 24 C -0.019 4.019 25 C -0.119 4.119 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.111 4.111 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.580 -12.920 4.494 13.920 hybrid contribution 0.018 1.663 0.224 1.678 sum 2.598 -11.257 4.718 12.479 Atomic orbital electron populations 1.69850 1.05813 1.26886 1.51149 1.25414 0.95101 0.97831 0.98071 0.86826 0.80146 0.84340 0.77155 1.21362 1.23137 1.19492 1.18641 0.84152 0.94226 1.41606 0.89296 1.44680 1.06483 1.46160 1.35280 1.21932 0.91062 0.95786 0.92165 1.22778 0.97554 0.96791 1.00330 1.22482 0.96644 0.97135 0.99664 1.21295 0.88816 0.89595 0.96846 0.93498 1.21927 0.85814 0.96975 0.96146 1.46122 1.29258 1.15166 1.44943 1.18249 0.83359 0.82209 0.82142 1.90654 1.66198 1.47097 1.39349 1.20004 0.97790 0.94704 1.01271 1.21446 0.95205 0.98693 0.93901 1.21002 0.96584 0.96668 1.00443 1.21285 0.99327 0.93016 0.98111 1.19504 0.95774 0.96001 0.98589 1.19658 0.93457 0.93444 0.95356 1.20764 1.01951 0.90828 0.98320 1.21646 0.95421 0.97496 1.01495 1.21550 0.96435 0.99381 0.98508 1.20407 0.99594 0.92147 0.98994 0.92567 0.93741 0.95111 0.91685 0.91540 0.91424 0.91237 0.92892 0.91560 0.75019 0.84840 0.85488 0.86180 0.90241 0.88073 0.91682 0.92074 0.91834 0.91607 0.90959 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 13.97 55.49 0.78 -25.30 16 2 C 0.04 1.02 5.43 -17.43 -0.09 0.93 16 3 Si 0.88 21.61 25.14 -169.99 -4.27 17.34 16 4 H -0.29 -6.92 6.59 56.52 0.37 -6.55 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.71 9.50 -15.06 -0.14 -6.85 16 8 H 0.09 2.37 5.45 -52.49 -0.29 2.08 16 9 N -0.60 -13.50 2.67 -162.57 -0.43 -13.93 16 10 C 0.11 2.40 6.29 -2.53 -0.02 2.38 16 11 C -0.14 -2.24 7.08 -24.58 -0.17 -2.41 16 12 C -0.12 -1.83 6.48 -24.90 -0.16 -1.99 16 13 C 0.14 2.60 3.30 -66.95 -0.22 2.38 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.12 2.13 5.15 -4.04 -0.02 2.11 16 16 N -0.70 -13.31 4.29 -61.25 -0.26 -13.57 16 17 C 0.55 10.67 7.68 -12.33 -0.09 10.58 16 18 O -0.55 -11.42 13.05 5.32 0.07 -11.35 16 19 C -0.13 -2.37 5.88 -104.83 -0.62 -2.99 16 20 C -0.07 -1.23 9.52 -39.28 -0.37 -1.61 16 21 C -0.13 -1.87 10.03 -39.75 -0.40 -2.27 16 22 C -0.10 -1.30 9.60 -39.35 -0.38 -1.68 16 23 C -0.10 -1.35 5.73 -104.65 -0.60 -1.95 16 24 C -0.02 -0.29 5.77 -104.23 -0.60 -0.89 16 25 C -0.08 -1.23 4.19 -28.06 -0.12 -1.34 16 26 C -0.12 -1.41 5.98 -26.74 -0.16 -1.57 16 27 C -0.12 -1.25 5.97 -26.75 -0.16 -1.41 16 28 C -0.07 -0.79 5.67 -28.05 -0.16 -0.95 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.04 1.01 3.28 -51.93 -0.17 0.84 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 38 H 0.41 7.86 4.42 -40.82 -0.18 7.68 16 39 H 0.13 2.31 6.33 -52.49 -0.33 1.98 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.12 1.24 8.05 -52.49 -0.42 0.81 16 42 H 0.08 1.29 8.01 -51.93 -0.42 0.87 16 43 H 0.10 1.68 5.99 -51.93 -0.31 1.37 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 49 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -30.39 370.62 -10.63 -41.02 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.60 Total: 9.74 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -4.49 Total: -9.54 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.08 Total: -52.80 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.27 Total: 17.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.39 -10.63 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027903634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.491 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds