Wall clock time and date at job start Tue Mar 31 2020 16:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48509 * 109.46780 * 271.09122 * 3 2 1 5 5 H 1.48495 * 109.47023 * 31.08803 * 3 2 1 6 6 H 1.48497 * 109.47249 * 151.09010 * 3 2 1 7 7 C 1.38808 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00303 * 338.99363 * 7 2 1 9 9 N 1.36937 * 119.99934 * 159.00096 * 7 2 1 10 10 C 1.47427 * 125.64946 * 324.73699 * 9 7 2 11 11 C 1.54906 * 104.83057 * 155.89314 * 10 9 7 12 12 C 1.55159 * 101.58367 * 37.01502 * 11 10 9 13 13 C 1.47026 * 125.65055 * 144.76985 * 9 7 2 14 14 H 1.09003 * 110.00790 * 300.52612 * 13 9 7 15 15 C 1.53001 * 109.88229 * 61.61698 * 13 9 7 16 16 N 1.46503 * 109.46968 * 295.31353 * 15 13 9 17 17 C 1.34779 * 119.99391 * 173.41497 * 16 15 13 18 18 O 1.21551 * 120.00420 * 0.02562 * 17 16 15 19 19 C 1.47846 * 119.99594 * 180.02562 * 17 16 15 20 20 C 1.39327 * 119.88331 * 5.51620 * 19 17 16 21 21 C 1.37941 * 119.60883 * 180.02562 * 20 19 17 22 22 C 1.38085 * 119.93073 * 0.12192 * 21 20 19 23 23 C 1.39024 * 120.86568 * 359.97438 * 22 21 20 24 24 C 1.37431 * 119.75460 * 359.78242 * 23 22 21 25 25 C 1.50615 * 122.63140 * 180.68093 * 24 23 22 26 26 C 1.52738 * 110.58762 * 342.18693 * 25 24 23 27 27 C 1.53235 * 108.34841 * 51.07368 * 26 25 24 28 28 C 1.50648 * 117.70129 * 179.71059 * 23 22 21 29 29 H 0.96996 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.09005 * 110.36136 * 37.05835 * 10 9 7 31 31 H 1.08993 * 110.46697 * 274.78285 * 10 9 7 32 32 H 1.09005 * 111.00808 * 278.93833 * 11 10 9 33 33 H 1.08999 * 111.00109 * 155.09049 * 11 10 9 34 34 H 1.08995 * 110.72010 * 206.13359 * 12 11 10 35 35 H 1.08997 * 110.72133 * 82.85830 * 12 11 10 36 36 H 1.09006 * 109.46826 * 175.31450 * 15 13 9 37 37 H 1.08993 * 109.46983 * 55.31879 * 15 13 9 38 38 H 0.96991 * 120.00348 * 353.41787 * 16 15 13 39 39 H 1.08001 * 120.19082 * 0.02562 * 20 19 17 40 40 H 1.08002 * 120.03169 * 180.17446 * 21 20 19 41 41 H 1.08001 * 119.57112 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.25564 * 102.47374 * 25 24 23 43 43 H 1.09000 * 109.25026 * 221.94190 * 25 24 23 44 44 H 1.09003 * 109.68735 * 170.80687 * 26 25 24 45 45 H 1.09007 * 109.68895 * 291.33581 * 26 25 24 46 46 H 1.09000 * 109.63118 * 170.46957 * 27 26 25 47 47 H 1.09003 * 109.67965 * 49.94852 * 27 26 25 48 48 H 1.09008 * 109.24589 * 282.59072 * 28 23 22 49 49 H 1.08993 * 109.25163 * 42.04870 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4747 2.0597 -1.3999 5 1 1.4595 2.6459 0.7229 6 1 3.5592 1.4336 0.6768 7 6 2.0102 -1.2021 -0.0005 8 1 1.5241 -2.1065 0.3343 9 7 3.3114 -1.2414 -0.4255 10 6 3.8851 -0.4276 -1.5128 11 6 5.4010 -0.3616 -1.2011 12 6 5.6667 -1.7849 -0.6434 13 6 4.3675 -2.1025 0.1264 14 1 4.5042 -1.8918 1.1871 15 6 3.9940 -3.5735 -0.0678 16 7 2.7936 -3.8798 0.7143 17 6 2.2006 -5.0842 0.5944 18 8 2.6619 -5.9163 -0.1621 19 6 0.9888 -5.3931 1.3831 20 6 0.3955 -4.4014 2.1614 21 6 -0.7346 -4.6960 2.8954 22 6 -1.2686 -5.9689 2.8572 23 6 -0.6823 -6.9654 2.0851 24 6 0.4410 -6.6829 1.3454 25 6 1.1196 -7.7083 0.4755 26 6 0.6852 -9.1187 0.8691 27 6 -0.8462 -9.1583 0.9087 28 6 -1.3202 -8.3300 2.1011 29 1 -0.4850 0.8400 0.0004 30 1 3.4525 0.5729 -1.5065 31 1 3.7166 -0.9068 -2.4771 32 1 5.6125 0.3985 -0.4490 33 1 5.9788 -0.1830 -2.1079 34 1 6.5233 -1.7813 0.0306 35 1 5.8170 -2.4956 -1.4560 36 1 4.8171 -4.2046 0.2676 37 1 3.7982 -3.7623 -1.1232 38 1 2.4257 -3.2160 1.3181 39 1 0.8180 -3.4078 2.1896 40 1 -1.2017 -3.9317 3.4988 41 1 -2.1533 -6.1933 3.4345 42 1 0.8545 -7.5280 -0.5662 43 1 2.1998 -7.6199 0.5919 44 1 1.0525 -9.8346 0.1338 45 1 1.0848 -9.3650 1.8529 46 1 -1.1831 -10.1888 1.0204 47 1 -1.2482 -8.7379 -0.0132 48 1 -1.0498 -8.8423 3.0245 49 1 -2.4036 -8.2208 2.0547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027903634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:35 Heat of formation + Delta-G solvation = -11.021038 kcal Electronic energy + Delta-G solvation = -28770.638969 eV Core-core repulsion = 25082.733862 eV Total energy + Delta-G solvation = -3687.905107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65586 -40.13932 -39.21039 -37.04639 -35.53058 -34.64212 -33.45088 -31.77995 -31.35010 -31.02472 -29.61043 -26.68815 -25.82156 -24.71753 -23.92735 -23.48065 -22.34521 -21.55709 -20.96109 -20.12407 -19.20036 -17.98439 -17.81078 -17.27786 -16.69605 -16.55094 -16.29637 -16.06339 -15.77051 -15.28894 -15.24901 -14.88501 -14.69132 -14.61115 -14.34617 -14.05306 -13.77146 -13.71669 -13.53170 -13.34653 -13.07067 -12.95435 -12.93110 -12.68988 -12.62893 -12.40624 -12.29105 -12.06173 -11.74628 -11.70335 -11.66978 -11.55775 -11.39905 -11.20015 -10.62871 -10.42330 -10.07044 -9.65674 -9.51140 -8.76553 -8.17527 -5.55410 -0.10553 0.40374 1.30010 1.39525 1.50640 1.89445 2.31480 2.44839 2.84579 3.02587 3.36230 3.68478 3.71828 3.80832 3.90715 3.97269 4.06769 4.08534 4.11772 4.21158 4.26744 4.31793 4.40294 4.45956 4.48872 4.64223 4.67933 4.71638 4.74802 4.82867 4.91924 4.96894 4.98126 4.98969 4.99734 5.07738 5.12728 5.14280 5.23008 5.29302 5.31120 5.43837 5.46405 5.47483 5.52407 5.58631 5.71077 5.88168 6.00458 6.20760 6.59126 6.82512 7.23751 7.55702 8.22140 9.00148 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.003703 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.450215 B = 7559.510772 C = 8880.439150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.019 4.019 3 Si 0.942 3.058 4 H -0.284 1.284 5 H -0.313 1.313 6 H -0.257 1.257 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.617 5.617 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.138 3.862 14 H 0.050 0.950 15 C 0.122 3.878 16 N -0.706 5.706 17 C 0.545 3.455 18 O -0.573 6.573 19 C -0.161 4.161 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.089 4.089 23 C -0.096 4.096 24 C -0.035 4.035 25 C -0.077 4.077 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.074 4.074 29 H 0.261 0.739 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.407 0.593 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -13.932 6.047 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.215 4.215 3 Si 0.772 3.228 4 H -0.212 1.212 5 H -0.242 1.242 6 H -0.181 1.181 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.148 4.148 13 C 0.032 3.968 14 H 0.068 0.932 15 C -0.004 4.004 16 N -0.358 5.358 17 C 0.334 3.666 18 O -0.456 6.456 19 C -0.164 4.164 20 C -0.112 4.112 21 C -0.152 4.152 22 C -0.107 4.107 23 C -0.097 4.097 24 C -0.036 4.036 25 C -0.114 4.114 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.246 0.754 39 H 0.133 0.867 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.432 -14.379 5.553 15.792 hybrid contribution -0.245 2.003 -0.123 2.021 sum 3.188 -12.377 5.430 13.886 Atomic orbital electron populations 1.69971 1.07288 1.27169 1.54372 1.25965 0.95597 1.00752 0.99225 0.85889 0.79194 0.80691 0.77000 1.21211 1.24189 1.18143 1.18728 0.85756 0.93518 1.39143 0.91102 1.44853 1.06297 1.46915 1.36229 1.22096 0.94368 0.94240 0.91510 1.22747 0.94054 0.97546 1.01952 1.22516 0.95551 0.96482 1.00244 1.21515 0.89412 0.88443 0.97447 0.93216 1.21911 0.86203 0.97495 0.94765 1.46205 1.29592 1.15073 1.44907 1.18659 0.83885 0.81984 0.82078 1.90631 1.67003 1.47635 1.40370 1.20049 0.97916 0.96093 1.02361 1.21402 0.96636 0.97851 0.95273 1.21284 0.95729 0.98148 1.00045 1.21721 0.99844 0.91854 0.97300 1.19978 0.94572 0.98031 0.97074 1.19908 0.94582 0.92835 0.96249 1.20628 1.00536 0.93207 0.97019 1.21625 0.96746 0.94980 1.02155 1.21564 0.95050 1.01034 0.98026 1.20536 1.00494 0.90044 0.99961 0.93000 0.95642 0.95619 0.91547 0.88265 0.87987 0.89944 0.90667 0.93870 0.75365 0.86689 0.83764 0.82263 0.92518 0.90434 0.90613 0.91199 0.88902 0.92795 0.88775 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.97 21.65 0.30 -57.01 16 2 C -0.02 -1.05 5.43 84.86 0.46 -0.59 16 3 Si 0.94 45.64 25.14 68.60 1.72 47.37 16 4 H -0.28 -13.53 6.59 99.48 0.66 -12.88 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.00 9.50 84.03 0.80 -12.20 16 8 H 0.07 4.01 5.45 -2.91 -0.02 3.99 16 9 N -0.62 -27.85 2.67 -668.26 -1.78 -29.63 16 10 C 0.10 4.17 6.29 86.85 0.55 4.72 16 11 C -0.12 -3.70 7.08 31.99 0.23 -3.48 16 12 C -0.11 -2.96 6.48 31.78 0.21 -2.75 16 13 C 0.14 4.95 3.30 45.34 0.15 5.10 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.12 4.46 5.15 86.38 0.44 4.91 16 16 N -0.71 -28.16 4.29 -465.96 -2.00 -30.16 16 17 C 0.54 22.39 7.68 86.79 0.67 23.05 16 18 O -0.57 -25.15 13.05 -3.88 -0.05 -25.20 16 19 C -0.16 -6.00 5.88 -20.00 -0.12 -6.12 16 20 C -0.09 -3.28 9.52 22.46 0.21 -3.06 16 21 C -0.13 -3.86 10.03 22.16 0.22 -3.63 16 22 C -0.09 -2.14 9.60 22.42 0.22 -1.93 16 23 C -0.10 -2.48 5.73 -19.88 -0.11 -2.59 16 24 C -0.03 -1.12 5.77 -19.61 -0.11 -1.23 16 25 C -0.08 -2.38 4.19 29.73 0.12 -2.26 16 26 C -0.12 -2.54 5.98 30.59 0.18 -2.36 16 27 C -0.12 -2.14 5.97 30.58 0.18 -1.95 16 28 C -0.07 -1.29 5.67 29.74 0.17 -1.12 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.03 1.15 3.28 -2.38 -0.01 1.14 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 36 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.04 1.78 8.11 -2.39 -0.02 1.76 16 38 H 0.41 16.66 4.42 -92.72 -0.41 16.25 16 39 H 0.12 4.38 6.33 -2.91 -0.02 4.36 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.16 2.58 8.05 -2.91 -0.02 2.55 16 42 H 0.06 1.96 8.01 -2.39 -0.02 1.94 16 43 H 0.08 2.73 5.99 -2.39 -0.01 2.71 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.39 8.10 -2.38 -0.02 1.38 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 48 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 Total: -1.00 -70.06 370.62 3.16 -66.90 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.49 Total: 35.23 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.46 Total: -7.50 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.48 Total: -116.80 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.72 Total: 47.37 kcal Total: -70.06 3.16 -66.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027903634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.879 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds