Wall clock time and date at job start Tue Mar 31 2020 16:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47462 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47458 * 30.00149 * 3 2 1 6 6 H 1.48507 * 109.47096 * 150.00246 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47853 * 119.99595 * 179.97438 * 17 16 15 20 20 C 1.39603 * 120.27185 * 359.71675 * 19 17 16 21 21 C 1.37624 * 119.61746 * 179.86280 * 20 19 17 22 22 C 1.39081 * 120.75671 * 0.56742 * 21 20 19 23 23 C 1.37827 * 119.90121 * 359.53554 * 22 21 20 24 24 C 1.38652 * 119.82477 * 0.20536 * 23 22 21 25 25 C 1.50668 * 122.55467 * 180.43098 * 23 22 21 26 26 C 1.52720 * 110.60089 * 342.31047 * 25 23 22 27 27 C 1.53326 * 108.37063 * 51.11398 * 26 25 23 28 28 C 1.50693 * 117.60590 * 179.36908 * 22 21 20 29 29 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 39 39 H 1.08002 * 120.18972 * 0.12234 * 20 19 17 40 40 H 1.08003 * 119.62535 * 180.32373 * 21 20 19 41 41 H 1.07997 * 119.78038 * 179.91136 * 24 23 22 42 42 H 1.08994 * 109.24384 * 102.60045 * 25 23 22 43 43 H 1.08992 * 109.24693 * 222.05795 * 25 23 22 44 44 H 1.09004 * 109.68145 * 170.83381 * 26 25 23 45 45 H 1.08997 * 109.68242 * 291.39299 * 26 25 23 46 46 H 1.09004 * 109.68179 * 49.75810 * 27 26 25 47 47 H 1.08999 * 109.68427 * 170.31827 * 27 26 25 48 48 H 1.09002 * 109.24693 * 42.14192 * 28 22 21 49 49 H 1.08999 * 109.21927 * 282.70532 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5358 -3.3450 20 6 4.4197 -7.5342 -2.3697 21 6 5.0486 -8.7351 -2.6072 22 6 5.7223 -8.9610 -3.8028 23 6 5.7560 -7.9784 -4.7687 24 6 5.1212 -6.7667 -4.5422 25 6 6.4595 -8.1625 -6.0883 26 6 7.4428 -9.3287 -6.0149 27 6 6.7030 -10.5502 -5.4567 28 6 6.3981 -10.2959 -3.9821 29 1 -0.4850 0.8401 0.0004 30 1 -0.4235 -1.8601 1.0682 31 1 -0.6985 -2.3866 -0.6197 32 1 0.0111 -4.1106 1.8169 33 1 -1.2711 -4.3837 0.5897 34 1 0.3273 -4.9724 -1.1133 35 1 1.1302 -5.6534 0.3396 36 1 1.6415 -3.6192 -2.4206 37 1 3.1751 -2.9297 -1.8368 38 1 3.0990 -5.7164 -1.2672 39 1 3.9034 -7.3668 -1.4360 40 1 5.0221 -9.5096 -1.8549 41 1 5.1493 -5.9968 -5.2990 42 1 5.7209 -8.3634 -6.8642 43 1 7.0023 -7.2505 -6.3363 44 1 7.8216 -9.5529 -7.0121 45 1 8.2718 -9.0691 -5.3565 46 1 5.7719 -10.6972 -6.0041 47 1 7.3307 -11.4359 -5.5545 48 1 5.7428 -11.0833 -3.6096 49 1 7.3293 -10.3056 -3.4156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028302884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:39 Heat of formation + Delta-G solvation = -9.634078 kcal Electronic energy + Delta-G solvation = -27406.445006 eV Core-core repulsion = 23718.600043 eV Total energy + Delta-G solvation = -3687.844963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51919 -39.13253 -37.61167 -36.07642 -34.30783 -32.81229 -32.48663 -30.90503 -29.57502 -29.14495 -28.51049 -25.21436 -24.44810 -23.57230 -23.19007 -22.30562 -20.94253 -20.22520 -19.65361 -19.16301 -17.65864 -16.67065 -16.24575 -15.95049 -15.38610 -15.22660 -14.85573 -14.70694 -14.51802 -14.21435 -14.09860 -13.86974 -13.61255 -13.48945 -13.20988 -12.90383 -12.73238 -12.44991 -12.11069 -11.89008 -11.84146 -11.66976 -11.57386 -11.33229 -11.25898 -10.94017 -10.83973 -10.79531 -10.72965 -10.21905 -10.11147 -9.93877 -9.85218 -9.73067 -9.60219 -8.97708 -8.84973 -8.64180 -8.53667 -6.84572 -5.76343 -3.12949 0.76653 1.17757 2.92154 3.39129 3.43681 3.47057 3.48238 3.80653 4.29204 4.32219 4.49026 4.53402 4.66224 4.76357 4.81329 4.93769 4.99960 5.17953 5.19004 5.24100 5.33043 5.39299 5.45706 5.48551 5.52448 5.56575 5.62490 5.63716 5.69481 5.79883 5.80328 5.86894 5.94583 6.03907 6.12215 6.17040 6.23105 6.26533 6.38010 6.45529 6.54625 6.61514 6.69723 6.73876 6.81853 7.05705 7.51996 7.60453 7.79260 7.79709 8.25641 8.47957 9.17705 9.78142 10.44947 11.35409 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.002382 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.009706 B =11750.140660 C =12674.158517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.717 5.717 17 C 0.550 3.450 18 O -0.540 6.540 19 C -0.128 4.128 20 C -0.089 4.089 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.086 4.086 24 C -0.061 4.061 25 C -0.081 4.081 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.083 4.083 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.394 0.606 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -23.689 -6.830 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.336 3.664 18 O -0.418 6.418 19 C -0.131 4.131 20 C -0.108 4.108 21 C -0.146 4.146 22 C -0.059 4.059 23 C -0.086 4.086 24 C -0.080 4.080 25 C -0.118 4.118 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.120 4.120 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.229 0.771 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.801 -22.758 -7.389 26.252 hybrid contribution 0.324 0.661 0.328 0.806 sum 11.125 -22.097 -7.061 25.727 Atomic orbital electron populations 1.69938 1.05008 1.25300 1.55970 1.24903 0.95697 0.97877 1.01434 0.86137 0.78694 0.83315 0.77738 1.21371 1.21641 1.20578 1.18994 0.90421 0.82177 1.44578 0.90620 1.44490 1.05866 1.00773 1.80171 1.21473 0.84665 0.90285 0.98921 1.23025 0.97440 0.99598 0.98635 1.22649 0.97118 0.96971 0.99839 1.21135 0.94423 0.88087 0.92060 0.94449 1.22274 0.96734 0.83273 0.99337 1.46070 1.54251 1.18686 1.17812 1.18288 0.78902 0.86809 0.82408 1.90775 1.60961 1.45596 1.44474 1.19994 1.02107 0.94829 0.96201 1.21232 0.98254 0.92988 0.98325 1.21067 0.98946 0.97446 0.97145 1.19807 0.97097 0.95447 0.93525 1.19577 0.99438 0.93308 0.96302 1.21305 0.94033 0.96487 0.96204 1.20484 0.97950 0.99407 0.93979 1.21553 0.98010 0.94817 1.01374 1.21557 1.00805 0.97995 0.95463 1.20528 1.00335 0.93652 0.97446 0.93603 0.90758 0.95669 0.92293 0.92295 0.91782 0.92415 0.91872 0.90974 0.77121 0.85529 0.85626 0.84784 0.90465 0.90500 0.91354 0.91545 0.91510 0.91404 0.90565 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.54 55.49 0.58 -26.20 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.45 9.73 -15.06 -0.15 -6.60 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.69 3.13 -162.57 -0.51 -15.20 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.08 16 11 C -0.15 -2.71 7.10 -24.52 -0.17 -2.88 16 12 C -0.13 -2.12 6.07 -24.83 -0.15 -2.27 16 13 C 0.15 3.01 3.22 -66.95 -0.22 2.79 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.11 2.15 5.09 -4.04 -0.02 2.13 16 16 N -0.72 -11.34 5.36 -61.25 -0.33 -11.67 16 17 C 0.55 9.33 7.78 -12.33 -0.10 9.23 16 18 O -0.54 -11.38 16.34 5.32 0.09 -11.29 16 19 C -0.13 -1.73 5.87 -105.07 -0.62 -2.35 16 20 C -0.09 -0.95 9.54 -39.30 -0.37 -1.33 16 21 C -0.13 -1.17 9.59 -39.49 -0.38 -1.55 16 22 C -0.06 -0.54 5.75 -104.46 -0.60 -1.14 16 23 C -0.09 -0.89 5.73 -104.63 -0.60 -1.49 16 24 C -0.06 -0.78 9.16 -39.05 -0.36 -1.14 16 25 C -0.08 -0.65 5.66 -28.04 -0.16 -0.80 16 26 C -0.12 -0.76 5.98 -26.71 -0.16 -0.91 16 27 C -0.12 -0.71 5.98 -26.71 -0.16 -0.87 16 28 C -0.08 -0.54 5.66 -28.03 -0.16 -0.70 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 30 H 0.07 1.97 6.86 -51.93 -0.36 1.62 16 31 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.37 8.03 -51.93 -0.42 0.95 16 37 H 0.07 1.64 7.86 -51.93 -0.41 1.23 16 38 H 0.39 4.95 6.30 -40.82 -0.26 4.69 16 39 H 0.13 1.10 6.43 -52.49 -0.34 0.76 16 40 H 0.13 0.84 8.05 -52.48 -0.42 0.42 16 41 H 0.13 1.77 7.63 -52.49 -0.40 1.37 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 46 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -32.59 385.77 -11.89 -44.48 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.03 Total: 2.71 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.48 Total: -5.94 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.25 Total: -53.08 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.59 -11.89 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028302884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.842 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds