Wall clock time and date at job start Tue Mar 31 2020 16:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48496 * 109.47462 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47458 * 30.00149 * 3 2 1 6 6 H 1.48507 * 109.47096 * 150.00246 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47853 * 119.99595 * 179.97438 * 17 16 15 20 20 C 1.39603 * 120.27185 * 359.71675 * 19 17 16 21 21 C 1.37624 * 119.61746 * 179.86280 * 20 19 17 22 22 C 1.39081 * 120.75671 * 0.56742 * 21 20 19 23 23 C 1.37827 * 119.90121 * 359.53554 * 22 21 20 24 24 C 1.38652 * 119.82477 * 0.20536 * 23 22 21 25 25 C 1.50668 * 122.55467 * 180.43098 * 23 22 21 26 26 C 1.52720 * 110.60089 * 342.31047 * 25 23 22 27 27 C 1.53326 * 108.37063 * 51.11398 * 26 25 23 28 28 C 1.50693 * 117.60590 * 179.36908 * 22 21 20 29 29 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 39 39 H 1.08002 * 120.18972 * 0.12234 * 20 19 17 40 40 H 1.08003 * 119.62535 * 180.32373 * 21 20 19 41 41 H 1.07997 * 119.78038 * 179.91136 * 24 23 22 42 42 H 1.08994 * 109.24384 * 102.60045 * 25 23 22 43 43 H 1.08992 * 109.24693 * 222.05795 * 25 23 22 44 44 H 1.09004 * 109.68145 * 170.83381 * 26 25 23 45 45 H 1.08997 * 109.68242 * 291.39299 * 26 25 23 46 46 H 1.09004 * 109.68179 * 49.75810 * 27 26 25 47 47 H 1.08999 * 109.68427 * 170.31827 * 27 26 25 48 48 H 1.09002 * 109.24693 * 42.14192 * 28 22 21 49 49 H 1.08999 * 109.21927 * 282.70532 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5358 -3.3450 20 6 4.4197 -7.5342 -2.3697 21 6 5.0486 -8.7351 -2.6072 22 6 5.7223 -8.9610 -3.8028 23 6 5.7560 -7.9784 -4.7687 24 6 5.1212 -6.7667 -4.5422 25 6 6.4595 -8.1625 -6.0883 26 6 7.4428 -9.3287 -6.0149 27 6 6.7030 -10.5502 -5.4567 28 6 6.3981 -10.2959 -3.9821 29 1 -0.4850 0.8401 0.0004 30 1 -0.4235 -1.8601 1.0682 31 1 -0.6985 -2.3866 -0.6197 32 1 0.0111 -4.1106 1.8169 33 1 -1.2711 -4.3837 0.5897 34 1 0.3273 -4.9724 -1.1133 35 1 1.1302 -5.6534 0.3396 36 1 1.6415 -3.6192 -2.4206 37 1 3.1751 -2.9297 -1.8368 38 1 3.0990 -5.7164 -1.2672 39 1 3.9034 -7.3668 -1.4360 40 1 5.0221 -9.5096 -1.8549 41 1 5.1493 -5.9968 -5.2990 42 1 5.7209 -8.3634 -6.8642 43 1 7.0023 -7.2505 -6.3363 44 1 7.8216 -9.5529 -7.0121 45 1 8.2718 -9.0691 -5.3565 46 1 5.7719 -10.6972 -6.0041 47 1 7.3307 -11.4359 -5.5545 48 1 5.7428 -11.0833 -3.6096 49 1 7.3293 -10.3056 -3.4156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028302884.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:38 Heat of formation + Delta-G solvation = -28.323318 kcal Electronic energy + Delta-G solvation = -27407.255433 eV Core-core repulsion = 23718.600043 eV Total energy + Delta-G solvation = -3688.655390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.49510 -40.31201 -39.24202 -36.82130 -35.86491 -34.43497 -33.51713 -31.92464 -31.29439 -30.12098 -29.78024 -26.83191 -26.05684 -24.52258 -24.07719 -23.11924 -22.17065 -21.75372 -21.21109 -20.16842 -18.97134 -18.40089 -17.53101 -16.87716 -16.68510 -16.41639 -16.18113 -16.14245 -15.69907 -15.41267 -15.23113 -14.76539 -14.70350 -14.58257 -14.36604 -14.00721 -13.80286 -13.67068 -13.48792 -13.38967 -13.09958 -13.03315 -12.87375 -12.72833 -12.43724 -12.33460 -12.03080 -11.89332 -11.72928 -11.71723 -11.49629 -11.46275 -11.41617 -11.30955 -10.99192 -10.71467 -10.22414 -9.77574 -9.54232 -8.88821 -7.90768 -5.28308 -0.16042 0.37397 1.41507 1.44583 1.51910 1.79815 2.07709 2.47469 2.82427 3.28303 3.56229 3.66613 3.72912 3.84597 3.93656 3.96414 3.99414 4.06970 4.16905 4.22459 4.24488 4.28898 4.40826 4.52582 4.54011 4.64729 4.67638 4.70555 4.88303 4.90890 4.95082 4.98269 5.01380 5.04669 5.11166 5.12558 5.17625 5.19818 5.28750 5.30762 5.36689 5.44906 5.46388 5.49311 5.53555 5.64591 5.65635 5.77138 5.96841 6.21050 6.51870 7.06927 7.17305 7.73827 8.39064 9.19733 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.002382 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.009706 B =11750.140660 C =12674.158517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.052 0.948 15 C 0.129 3.871 16 N -0.700 5.700 17 C 0.547 3.453 18 O -0.594 6.594 19 C -0.153 4.153 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.053 4.053 23 C -0.093 4.093 24 C -0.080 4.080 25 C -0.084 4.084 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.083 4.083 29 H 0.248 0.752 30 H 0.039 0.961 31 H -0.009 1.009 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.415 0.585 39 H 0.150 0.850 40 H 0.161 0.839 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 -28.077 -5.659 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.352 5.352 17 C 0.336 3.664 18 O -0.476 6.476 19 C -0.156 4.156 20 C -0.105 4.105 21 C -0.141 4.141 22 C -0.053 4.053 23 C -0.093 4.093 24 C -0.099 4.099 25 C -0.121 4.121 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.120 4.120 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.253 0.747 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.327 -27.213 -6.189 30.509 hybrid contribution -0.071 1.925 -0.092 1.929 sum 12.256 -25.288 -6.281 28.795 Atomic orbital electron populations 1.70138 1.06206 1.25411 1.57501 1.25672 0.96565 1.00972 1.02163 0.85189 0.77982 0.79582 0.77283 1.21890 1.21539 1.19265 1.19289 0.90689 0.83699 1.43301 0.90761 1.44758 1.06415 1.01887 1.80468 1.21303 0.83861 0.93744 0.96413 1.22890 0.99578 0.95134 0.99465 1.22652 0.94996 0.97387 1.00162 1.21351 0.96089 0.86873 0.91622 0.93018 1.21740 0.95007 0.84134 0.98894 1.45739 1.53550 1.17652 1.18283 1.18927 0.78178 0.87658 0.81630 1.90741 1.62935 1.47708 1.46199 1.19753 1.03981 0.93916 0.97913 1.21473 0.98157 0.92625 0.98204 1.21482 0.97520 0.97434 0.97711 1.20272 0.95929 0.96216 0.92915 1.19814 0.99165 0.92610 0.97677 1.21316 0.95333 0.97375 0.95908 1.20547 0.98354 1.00240 0.92960 1.21561 0.97427 0.94241 1.02283 1.21581 1.00922 0.98291 0.94978 1.20644 1.00969 0.92199 0.98146 0.94254 0.94304 0.99142 0.90962 0.89758 0.91599 0.87359 0.94550 0.94826 0.74696 0.83263 0.82113 0.86899 0.90224 0.91028 0.90088 0.91616 0.91881 0.89502 0.88685 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 10.54 21.65 0.23 -57.53 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 3 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 4 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.72 9.73 84.03 0.82 -12.90 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -31.19 3.13 -668.26 -2.09 -33.28 16 10 C 0.17 8.42 5.42 86.86 0.47 8.89 16 11 C -0.13 -4.53 7.10 32.03 0.23 -4.30 16 12 C -0.11 -3.43 6.07 31.82 0.19 -3.24 16 13 C 0.15 5.77 3.22 45.34 0.15 5.92 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 15 C 0.13 5.23 5.09 86.38 0.44 5.67 16 16 N -0.70 -21.87 5.36 -465.97 -2.50 -24.36 16 17 C 0.55 19.13 7.78 86.79 0.67 19.81 16 18 O -0.59 -26.78 16.34 -3.87 -0.06 -26.85 16 19 C -0.15 -4.09 5.87 -20.16 -0.12 -4.21 16 20 C -0.09 -1.60 9.54 22.45 0.21 -1.38 16 21 C -0.12 -1.78 9.59 22.33 0.21 -1.56 16 22 C -0.05 -0.81 5.75 -19.76 -0.11 -0.93 16 23 C -0.09 -1.81 5.73 -19.87 -0.11 -1.92 16 24 C -0.08 -2.09 9.16 22.62 0.21 -1.89 16 25 C -0.08 -1.27 5.66 29.75 0.17 -1.10 16 26 C -0.12 -1.20 5.98 30.61 0.18 -1.02 16 27 C -0.12 -0.99 5.98 30.61 0.18 -0.80 16 28 C -0.08 -0.73 5.66 29.75 0.17 -0.56 16 29 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.04 2.14 6.86 -2.39 -0.02 2.13 16 31 H -0.01 -0.52 8.08 -2.39 -0.02 -0.54 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.07 1.99 7.78 -2.39 -0.02 1.97 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 37 H 0.03 1.61 7.86 -2.39 -0.02 1.59 16 38 H 0.41 9.33 6.30 -92.70 -0.58 8.74 16 39 H 0.15 1.97 6.43 -2.91 -0.02 1.95 16 40 H 0.16 1.21 8.05 -2.91 -0.02 1.19 16 41 H 0.11 3.31 7.63 -2.91 -0.02 3.28 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 44 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.07 0.69 8.10 -2.39 -0.02 0.67 16 46 H 0.06 0.58 8.10 -2.38 -0.02 0.56 16 47 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.09 0.55 8.12 -2.39 -0.02 0.53 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -77.50 385.77 2.39 -75.11 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.35 Total: 16.07 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.43 Total: 1.43 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.36 Total: -115.17 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.50 2.39 -75.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028302884.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.785 kcal (2) G-P(sol) polarization free energy of solvation -77.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds