Wall clock time and date at job start Tue Mar 31 2020 16:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99575 * 2 1 4 4 H 1.48500 * 109.47330 * 271.73143 * 3 2 1 5 5 H 1.48499 * 109.47229 * 31.73194 * 3 2 1 6 6 H 1.48502 * 109.47175 * 151.72955 * 3 2 1 7 7 C 1.38805 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99957 * 341.96639 * 7 2 1 9 9 N 1.36942 * 120.00237 * 161.97296 * 7 2 1 10 10 C 1.47427 * 125.64345 * 323.03766 * 9 7 2 11 11 C 1.54911 * 104.82771 * 155.82934 * 10 9 7 12 12 C 1.55159 * 101.58365 * 37.00573 * 11 10 9 13 13 C 1.47022 * 125.64810 * 142.98728 * 9 7 2 14 14 H 1.08997 * 109.88399 * 300.52067 * 13 9 7 15 15 C 1.52997 * 109.88227 * 61.68696 * 13 9 7 16 16 N 1.46501 * 109.47266 * 295.44653 * 15 13 9 17 17 C 1.34774 * 119.99760 * 173.57046 * 16 15 13 18 18 O 1.21551 * 120.00230 * 0.02562 * 17 16 15 19 19 C 1.47854 * 119.99831 * 180.02562 * 17 16 15 20 20 C 1.39598 * 120.26660 * 0.02562 * 19 17 16 21 21 C 1.37629 * 119.62069 * 180.11757 * 20 19 17 22 22 C 1.39074 * 120.75332 * 359.97438 * 21 20 19 23 23 C 1.37836 * 119.89911 * 359.71677 * 22 21 20 24 24 C 1.38646 * 119.82900 * 0.17473 * 23 22 21 25 25 C 1.50660 * 122.54416 * 180.76323 * 23 22 21 26 26 C 1.52720 * 110.59288 * 341.88934 * 25 23 22 27 27 C 1.53318 * 108.38029 * 51.21849 * 26 25 23 28 28 C 1.50686 * 117.61468 * 179.34944 * 22 21 20 29 29 H 0.97003 * 120.00764 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.36450 * 36.99057 * 10 9 7 31 31 H 1.08995 * 110.46136 * 274.71192 * 10 9 7 32 32 H 1.09009 * 111.00250 * 278.93839 * 11 10 9 33 33 H 1.08996 * 111.00849 * 155.08608 * 11 10 9 34 34 H 1.08997 * 110.71468 * 82.86226 * 12 11 10 35 35 H 1.08996 * 110.72065 * 206.12983 * 12 11 10 36 36 H 1.09005 * 109.46857 * 55.45155 * 15 13 9 37 37 H 1.09004 * 109.46984 * 175.44894 * 15 13 9 38 38 H 0.96997 * 119.99863 * 353.58015 * 16 15 13 39 39 H 1.08003 * 120.19535 * 0.09864 * 20 19 17 40 40 H 1.08003 * 119.63005 * 180.02562 * 21 20 19 41 41 H 1.07994 * 119.78561 * 179.97438 * 24 23 22 42 42 H 1.09008 * 109.25186 * 102.17535 * 25 23 22 43 43 H 1.09001 * 109.25538 * 221.59715 * 25 23 22 44 44 H 1.08994 * 109.68383 * 170.94654 * 26 25 23 45 45 H 1.09004 * 109.68292 * 291.46123 * 26 25 23 46 46 H 1.09012 * 109.66990 * 49.85930 * 27 26 25 47 47 H 1.08992 * 109.67966 * 170.36332 * 27 26 25 48 48 H 1.09001 * 109.24813 * 282.62414 * 28 22 21 49 49 H 1.08996 * 109.24413 * 42.04487 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4609 2.0677 -1.3994 5 1 1.4663 2.6418 0.7364 6 1 3.5655 1.4301 0.6631 7 6 2.0103 -1.2020 -0.0005 8 1 1.5101 -2.1146 0.2886 9 7 3.3293 -1.2310 -0.3676 10 6 3.9433 -0.4146 -1.4306 11 6 5.4432 -0.3333 -1.0516 12 6 5.6970 -1.7524 -0.4780 13 6 4.3677 -2.0804 0.2340 14 1 4.4538 -1.8629 1.2985 15 6 4.0171 -3.5553 0.0279 16 7 2.7841 -3.8703 0.7537 17 6 2.2100 -5.0815 0.6130 18 8 2.7156 -5.9128 -0.1156 19 6 0.9653 -5.3991 1.3450 20 6 0.3796 -4.4484 2.1828 21 6 -0.7777 -4.7591 2.8597 22 6 -1.3707 -6.0091 2.7181 23 6 -0.8007 -6.9498 1.8874 24 6 0.3640 -6.6467 1.1990 25 6 -1.4013 -8.3155 1.6770 26 6 -2.3899 -8.6453 2.7933 27 6 -3.3757 -7.4787 2.9263 28 6 -2.6280 -6.2788 3.5036 29 1 -0.4851 0.8400 -0.0004 30 1 3.5015 0.5816 -1.4468 31 1 3.8228 -0.8982 -2.4000 32 1 5.6136 0.4308 -0.2930 33 1 6.0594 -0.1518 -1.9321 34 1 5.8903 -2.4639 -1.2808 35 1 6.5225 -1.7388 0.2336 36 1 3.8729 -3.7495 -1.0349 37 1 4.8291 -4.1777 0.4041 38 1 2.3808 -3.2070 1.3353 39 1 0.8322 -3.4748 2.2994 40 1 -1.2312 -4.0236 3.5076 41 1 0.8102 -7.3844 0.5487 42 1 -1.9210 -8.3358 0.7190 43 1 -0.6058 -9.0607 1.6694 44 1 -2.9321 -9.5578 2.5457 45 1 -1.8521 -8.7811 3.7317 46 1 -3.7771 -7.2238 1.9454 47 1 -4.1898 -7.7604 3.5940 48 1 -2.3662 -6.4842 4.5416 49 1 -3.2722 -5.4005 3.4631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028302885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:42 Heat of formation + Delta-G solvation = -2.651952 kcal Electronic energy + Delta-G solvation = -28257.791056 eV Core-core repulsion = 24570.248860 eV Total energy + Delta-G solvation = -3687.542196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.19533 -38.96372 -37.81792 -35.77428 -34.04476 -32.68803 -32.49182 -30.68190 -30.00365 -29.09180 -28.76822 -25.28302 -24.25359 -23.36148 -22.92062 -21.98672 -21.01174 -20.33575 -19.72973 -18.87725 -17.59650 -16.49840 -16.23545 -15.80948 -15.64124 -15.03436 -14.79607 -14.47758 -14.44975 -14.21587 -13.93513 -13.59284 -13.42578 -13.19836 -13.04728 -12.83075 -12.57339 -12.44432 -12.31620 -12.13347 -11.97057 -11.39288 -11.34954 -11.32370 -11.24687 -11.01792 -10.91407 -10.72383 -10.57540 -10.49201 -10.42946 -10.21081 -9.87211 -9.61393 -9.39264 -8.63791 -8.59625 -8.49743 -8.25715 -6.86131 -6.06345 -3.52206 1.12776 1.56934 3.23655 3.26965 3.40705 3.46008 3.75230 4.15824 4.45849 4.59479 4.60635 4.77323 4.89514 5.00786 5.04676 5.10943 5.19424 5.26126 5.32259 5.39427 5.42914 5.44119 5.48269 5.51437 5.54674 5.71146 5.79448 5.83292 5.87891 5.89721 5.93784 5.96712 6.08540 6.11118 6.13762 6.18551 6.21558 6.25550 6.32450 6.38193 6.58079 6.59272 6.63956 6.72822 6.83531 6.84898 7.04317 7.13094 7.84046 8.13407 8.26035 8.72973 8.77959 9.58131 10.18223 11.07482 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.003346 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.108742 B = 8365.446719 C = 9752.620104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.090 0.910 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.048 0.952 15 C 0.117 3.883 16 N -0.702 5.702 17 C 0.554 3.446 18 O -0.559 6.559 19 C -0.129 4.129 20 C -0.075 4.075 21 C -0.125 4.125 22 C -0.058 4.058 23 C -0.093 4.093 24 C -0.063 4.063 25 C -0.078 4.078 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.082 4.082 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.411 0.589 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -11.586 6.825 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.164 4.164 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.327 5.327 10 C -0.009 4.009 11 C -0.175 4.175 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.009 4.009 16 N -0.354 5.354 17 C 0.341 3.659 18 O -0.440 6.440 19 C -0.132 4.132 20 C -0.094 4.094 21 C -0.143 4.143 22 C -0.058 4.058 23 C -0.093 4.093 24 C -0.082 4.082 25 C -0.115 4.115 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.251 0.749 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.255 -12.028 6.349 13.603 hybrid contribution 0.193 1.585 0.070 1.598 sum -0.062 -10.443 6.419 12.258 Atomic orbital electron populations 1.69817 1.05798 1.26871 1.51464 1.25457 0.95135 0.97930 0.97877 0.86746 0.80062 0.84103 0.77118 1.21437 1.23186 1.19396 1.18657 0.82611 0.93998 1.43416 0.89298 1.44674 1.05187 1.46734 1.36095 1.21918 0.90921 0.95607 0.92435 1.22781 0.97559 0.96834 1.00279 1.22484 0.96490 0.97136 0.99828 1.21298 0.88924 0.89581 0.96717 0.93432 1.21935 0.85085 0.96960 0.96942 1.46104 1.27020 1.14684 1.47586 1.18249 0.83880 0.82278 0.81457 1.90690 1.64975 1.48384 1.39974 1.19912 0.97017 0.95672 1.00605 1.21370 0.95231 0.98521 0.94293 1.21087 0.96135 0.96275 1.00836 1.19770 0.96157 0.93334 0.96588 1.19487 0.95641 0.96053 0.98130 1.21197 0.94018 0.95758 0.97247 1.20444 0.98570 0.93244 0.99267 1.21538 0.97113 0.97985 0.98980 1.21549 0.97671 0.95002 1.01568 1.20508 0.93783 0.98976 0.98638 0.92562 0.93906 0.95117 0.91646 0.91543 0.91236 0.91404 0.91579 0.92846 0.74901 0.84949 0.85602 0.85154 0.90665 0.90819 0.91587 0.91671 0.91487 0.91567 0.90592 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.97 55.49 0.78 -25.43 16 2 C 0.04 1.03 5.45 -17.43 -0.09 0.93 16 3 Si 0.89 21.73 24.97 -169.99 -4.25 17.48 16 4 H -0.29 -6.96 6.68 56.52 0.38 -6.58 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.76 9.47 -15.06 -0.14 -6.90 16 8 H 0.09 2.40 5.60 -52.48 -0.29 2.10 16 9 N -0.60 -13.60 2.65 -162.58 -0.43 -14.03 16 10 C 0.12 2.42 6.27 -2.53 -0.02 2.41 16 11 C -0.14 -2.25 7.08 -24.58 -0.17 -2.43 16 12 C -0.12 -1.85 6.48 -24.90 -0.16 -2.01 16 13 C 0.14 2.64 3.30 -66.96 -0.22 2.42 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.12 2.16 5.15 -4.04 -0.02 2.14 16 16 N -0.70 -13.56 4.29 -61.25 -0.26 -13.83 16 17 C 0.55 11.06 7.78 -12.33 -0.10 10.97 16 18 O -0.56 -12.43 16.33 5.32 0.09 -12.35 16 19 C -0.13 -2.29 5.87 -105.07 -0.62 -2.91 16 20 C -0.08 -1.25 9.54 -39.30 -0.37 -1.63 16 21 C -0.13 -1.82 9.59 -39.49 -0.38 -2.20 16 22 C -0.06 -0.77 5.75 -104.47 -0.60 -1.37 16 23 C -0.09 -1.27 5.73 -104.64 -0.60 -1.87 16 24 C -0.06 -1.01 9.16 -39.05 -0.36 -1.37 16 25 C -0.08 -0.82 5.66 -28.05 -0.16 -0.98 16 26 C -0.12 -1.03 5.98 -26.71 -0.16 -1.19 16 27 C -0.12 -1.06 5.97 -26.72 -0.16 -1.22 16 28 C -0.08 -0.83 5.67 -28.04 -0.16 -0.99 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.98 3.28 -51.93 -0.17 0.81 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.41 7.97 4.44 -40.82 -0.18 7.79 16 39 H 0.13 2.23 6.43 -52.48 -0.34 1.90 16 40 H 0.13 1.59 8.05 -52.48 -0.42 1.17 16 41 H 0.13 2.05 7.63 -52.49 -0.40 1.65 16 42 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -31.36 376.56 -10.60 -41.96 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.71 Total: 8.69 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.49 Total: -8.18 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.08 Total: -53.28 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.25 Total: 17.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.36 -10.60 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028302885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.308 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds