Wall clock time and date at job start Tue Mar 31 2020 16:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99575 * 2 1 4 4 H 1.48500 * 109.47330 * 271.73143 * 3 2 1 5 5 H 1.48499 * 109.47229 * 31.73194 * 3 2 1 6 6 H 1.48502 * 109.47175 * 151.72955 * 3 2 1 7 7 C 1.38805 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99957 * 341.96639 * 7 2 1 9 9 N 1.36942 * 120.00237 * 161.97296 * 7 2 1 10 10 C 1.47427 * 125.64345 * 323.03766 * 9 7 2 11 11 C 1.54911 * 104.82771 * 155.82934 * 10 9 7 12 12 C 1.55159 * 101.58365 * 37.00573 * 11 10 9 13 13 C 1.47022 * 125.64810 * 142.98728 * 9 7 2 14 14 H 1.08997 * 109.88399 * 300.52067 * 13 9 7 15 15 C 1.52997 * 109.88227 * 61.68696 * 13 9 7 16 16 N 1.46501 * 109.47266 * 295.44653 * 15 13 9 17 17 C 1.34774 * 119.99760 * 173.57046 * 16 15 13 18 18 O 1.21551 * 120.00230 * 0.02562 * 17 16 15 19 19 C 1.47854 * 119.99831 * 180.02562 * 17 16 15 20 20 C 1.39598 * 120.26660 * 0.02562 * 19 17 16 21 21 C 1.37629 * 119.62069 * 180.11757 * 20 19 17 22 22 C 1.39074 * 120.75332 * 359.97438 * 21 20 19 23 23 C 1.37836 * 119.89911 * 359.71677 * 22 21 20 24 24 C 1.38646 * 119.82900 * 0.17473 * 23 22 21 25 25 C 1.50660 * 122.54416 * 180.76323 * 23 22 21 26 26 C 1.52720 * 110.59288 * 341.88934 * 25 23 22 27 27 C 1.53318 * 108.38029 * 51.21849 * 26 25 23 28 28 C 1.50686 * 117.61468 * 179.34944 * 22 21 20 29 29 H 0.97003 * 120.00764 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.36450 * 36.99057 * 10 9 7 31 31 H 1.08995 * 110.46136 * 274.71192 * 10 9 7 32 32 H 1.09009 * 111.00250 * 278.93839 * 11 10 9 33 33 H 1.08996 * 111.00849 * 155.08608 * 11 10 9 34 34 H 1.08997 * 110.71468 * 82.86226 * 12 11 10 35 35 H 1.08996 * 110.72065 * 206.12983 * 12 11 10 36 36 H 1.09005 * 109.46857 * 55.45155 * 15 13 9 37 37 H 1.09004 * 109.46984 * 175.44894 * 15 13 9 38 38 H 0.96997 * 119.99863 * 353.58015 * 16 15 13 39 39 H 1.08003 * 120.19535 * 0.09864 * 20 19 17 40 40 H 1.08003 * 119.63005 * 180.02562 * 21 20 19 41 41 H 1.07994 * 119.78561 * 179.97438 * 24 23 22 42 42 H 1.09008 * 109.25186 * 102.17535 * 25 23 22 43 43 H 1.09001 * 109.25538 * 221.59715 * 25 23 22 44 44 H 1.08994 * 109.68383 * 170.94654 * 26 25 23 45 45 H 1.09004 * 109.68292 * 291.46123 * 26 25 23 46 46 H 1.09012 * 109.66990 * 49.85930 * 27 26 25 47 47 H 1.08992 * 109.67966 * 170.36332 * 27 26 25 48 48 H 1.09001 * 109.24813 * 282.62414 * 28 22 21 49 49 H 1.08996 * 109.24413 * 42.04487 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4609 2.0677 -1.3994 5 1 1.4663 2.6418 0.7364 6 1 3.5655 1.4301 0.6631 7 6 2.0103 -1.2020 -0.0005 8 1 1.5101 -2.1146 0.2886 9 7 3.3293 -1.2310 -0.3676 10 6 3.9433 -0.4146 -1.4306 11 6 5.4432 -0.3333 -1.0516 12 6 5.6970 -1.7524 -0.4780 13 6 4.3677 -2.0804 0.2340 14 1 4.4538 -1.8629 1.2985 15 6 4.0171 -3.5553 0.0279 16 7 2.7841 -3.8703 0.7537 17 6 2.2100 -5.0815 0.6130 18 8 2.7156 -5.9128 -0.1156 19 6 0.9653 -5.3991 1.3450 20 6 0.3796 -4.4484 2.1828 21 6 -0.7777 -4.7591 2.8597 22 6 -1.3707 -6.0091 2.7181 23 6 -0.8007 -6.9498 1.8874 24 6 0.3640 -6.6467 1.1990 25 6 -1.4013 -8.3155 1.6770 26 6 -2.3899 -8.6453 2.7933 27 6 -3.3757 -7.4787 2.9263 28 6 -2.6280 -6.2788 3.5036 29 1 -0.4851 0.8400 -0.0004 30 1 3.5015 0.5816 -1.4468 31 1 3.8228 -0.8982 -2.4000 32 1 5.6136 0.4308 -0.2930 33 1 6.0594 -0.1518 -1.9321 34 1 5.8903 -2.4639 -1.2808 35 1 6.5225 -1.7388 0.2336 36 1 3.8729 -3.7495 -1.0349 37 1 4.8291 -4.1777 0.4041 38 1 2.3808 -3.2070 1.3353 39 1 0.8322 -3.4748 2.2994 40 1 -1.2312 -4.0236 3.5076 41 1 0.8102 -7.3844 0.5487 42 1 -1.9210 -8.3358 0.7190 43 1 -0.6058 -9.0607 1.6694 44 1 -2.9321 -9.5578 2.5457 45 1 -1.8521 -8.7811 3.7317 46 1 -3.7771 -7.2238 1.9454 47 1 -4.1898 -7.7604 3.5940 48 1 -2.3662 -6.4842 4.5416 49 1 -3.2722 -5.4005 3.4631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028302885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:41 Heat of formation + Delta-G solvation = -19.904436 kcal Electronic energy + Delta-G solvation = -28258.539180 eV Core-core repulsion = 24570.248860 eV Total energy + Delta-G solvation = -3688.290320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46741 -40.33090 -39.35089 -36.80527 -35.60939 -34.63832 -33.52173 -31.90295 -31.77571 -30.45757 -29.80957 -26.77972 -25.90117 -24.50399 -24.06433 -23.14223 -22.42545 -21.66045 -21.23635 -20.10262 -19.18435 -18.10817 -17.89632 -17.25954 -16.69586 -16.51228 -16.15858 -15.99042 -15.59133 -15.42837 -15.21703 -14.85998 -14.72308 -14.62763 -14.38934 -14.26576 -13.95444 -13.73761 -13.65445 -13.41314 -13.08174 -13.06134 -12.95016 -12.66768 -12.43789 -12.32964 -12.27638 -12.07376 -11.74798 -11.71638 -11.54468 -11.44076 -11.39602 -11.30843 -10.90646 -10.65509 -10.06054 -9.77446 -9.52293 -8.73924 -8.16525 -5.58739 -0.14695 0.36495 1.30636 1.39795 1.51209 1.82125 2.27732 2.44331 2.83460 3.04708 3.35049 3.62586 3.67550 3.84985 3.90575 3.95295 3.99761 4.07904 4.11433 4.17781 4.23214 4.26302 4.33385 4.45730 4.51910 4.63186 4.65808 4.67470 4.73190 4.82667 4.91738 4.92351 4.99055 4.99330 5.00800 5.04371 5.11225 5.13144 5.17700 5.28536 5.29735 5.36089 5.46442 5.46626 5.49962 5.52905 5.62932 5.89591 5.96872 6.21355 6.55367 6.82660 7.18621 7.55147 8.22211 9.00627 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.003346 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.108742 B = 8365.446719 C = 9752.620104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.018 4.018 3 Si 0.946 3.054 4 H -0.286 1.286 5 H -0.313 1.313 6 H -0.254 1.254 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.617 5.617 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.138 3.862 14 H 0.051 0.949 15 C 0.120 3.880 16 N -0.703 5.703 17 C 0.549 3.451 18 O -0.590 6.590 19 C -0.156 4.156 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.052 4.052 23 C -0.092 4.092 24 C -0.074 4.074 25 C -0.080 4.080 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.083 4.083 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -12.448 7.914 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.215 4.215 3 Si 0.777 3.223 4 H -0.214 1.214 5 H -0.242 1.242 6 H -0.178 1.178 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.344 5.344 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.148 4.148 13 C 0.032 3.968 14 H 0.069 0.931 15 C -0.006 4.006 16 N -0.354 5.354 17 C 0.337 3.663 18 O -0.473 6.473 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.149 4.149 22 C -0.053 4.053 23 C -0.092 4.092 24 C -0.093 4.093 25 C -0.117 4.117 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.120 4.120 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.606 -12.891 7.441 14.897 hybrid contribution -0.096 1.735 -0.282 1.760 sum 0.510 -11.156 7.159 13.265 Atomic orbital electron populations 1.69941 1.07291 1.27196 1.54544 1.26019 0.95641 1.00896 0.98929 0.85811 0.79227 0.80396 0.76910 1.21403 1.24222 1.17849 1.18719 0.84331 0.93246 1.40993 0.91240 1.44842 1.04894 1.47486 1.37151 1.22088 0.94073 0.94096 0.91904 1.22752 0.94262 0.97557 1.01735 1.22519 0.95175 0.96499 1.00624 1.21517 0.89699 0.88367 0.97189 0.93072 1.21949 0.85421 0.97591 0.95613 1.46181 1.27321 1.14503 1.47409 1.18664 0.84431 0.82019 0.81151 1.90647 1.66050 1.49177 1.41470 1.19871 0.96969 0.97034 1.01996 1.21334 0.96416 0.97912 0.95241 1.21372 0.95389 0.97487 1.00634 1.20223 0.96915 0.92333 0.95793 1.19881 0.94559 0.97724 0.96999 1.21327 0.95075 0.95045 0.97821 1.20552 0.99350 0.91332 1.00470 1.21551 0.96649 0.98806 0.98206 1.21579 0.98140 0.94295 1.01682 1.20631 0.92216 1.00110 0.99017 0.92972 0.95750 0.95568 0.91515 0.88252 0.89951 0.87951 0.93835 0.90602 0.75106 0.86255 0.83849 0.85564 0.90232 0.90029 0.89487 0.91278 0.92222 0.89185 0.88744 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 13.97 21.65 0.30 -56.99 16 2 C -0.02 -1.02 5.45 84.86 0.46 -0.55 16 3 Si 0.95 45.62 24.97 68.60 1.71 47.34 16 4 H -0.29 -13.61 6.68 99.48 0.66 -12.94 16 5 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.25 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.24 -13.07 9.47 84.03 0.80 -12.27 16 8 H 0.07 3.95 5.60 -2.91 -0.02 3.93 16 9 N -0.62 -27.83 2.65 -668.27 -1.77 -29.60 16 10 C 0.10 4.17 6.27 86.86 0.54 4.72 16 11 C -0.12 -3.70 7.08 31.99 0.23 -3.47 16 12 C -0.11 -2.97 6.48 31.78 0.21 -2.76 16 13 C 0.14 4.97 3.30 45.34 0.15 5.12 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.12 4.43 5.15 86.38 0.44 4.88 16 16 N -0.70 -28.28 4.29 -465.96 -2.00 -30.28 16 17 C 0.55 23.04 7.78 86.79 0.67 23.72 16 18 O -0.59 -27.36 16.33 -3.88 -0.06 -27.42 16 19 C -0.16 -5.83 5.87 -20.16 -0.12 -5.95 16 20 C -0.09 -3.16 9.54 22.45 0.21 -2.94 16 21 C -0.13 -3.83 9.59 22.33 0.21 -3.61 16 22 C -0.05 -1.33 5.75 -19.76 -0.11 -1.45 16 23 C -0.09 -2.45 5.73 -19.87 -0.11 -2.56 16 24 C -0.07 -2.43 9.16 22.61 0.21 -2.22 16 25 C -0.08 -1.55 5.66 29.74 0.17 -1.38 16 26 C -0.11 -1.63 5.98 30.61 0.18 -1.45 16 27 C -0.12 -1.73 5.97 30.60 0.18 -1.55 16 28 C -0.08 -1.46 5.67 29.75 0.17 -1.29 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.02 1.09 3.28 -2.39 -0.01 1.08 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 33 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.81 8.12 -2.38 -0.02 1.79 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.41 16.74 4.44 -92.71 -0.41 16.33 16 39 H 0.12 4.37 6.43 -2.91 -0.02 4.35 16 40 H 0.14 3.58 8.05 -2.91 -0.02 3.56 16 41 H 0.13 4.16 7.63 -2.91 -0.02 4.14 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 46 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 Total: -1.00 -70.91 376.56 3.18 -67.73 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.50 Total: 34.26 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 4.50 Total: -5.03 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -3.47 Total: -116.88 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.71 Total: 47.34 kcal Total: -70.91 3.18 -67.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028302885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.823 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds