Wall clock time and date at job start Tue Mar 31 2020 16:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00545 * 2 1 4 4 H 1.48493 * 109.47362 * 270.00008 * 3 2 1 5 5 H 1.48505 * 109.46868 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.47171 * 149.99801 * 3 2 1 7 7 C 1.38822 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00405 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99427 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65116 * 0.03045 * 9 7 2 11 11 C 1.54911 * 104.83352 * 155.83343 * 10 9 7 12 12 C 1.55155 * 101.58558 * 37.00719 * 11 10 9 13 13 H 1.09001 * 110.71990 * 83.03713 * 12 11 10 14 14 C 1.52990 * 110.72396 * 206.13934 * 12 11 10 15 15 N 1.46503 * 109.47260 * 185.00206 * 14 12 11 16 16 C 1.34780 * 120.00293 * 179.97438 * 15 14 12 17 17 O 1.21555 * 119.99565 * 359.97438 * 16 15 14 18 18 C 1.47838 * 120.00203 * 179.97438 * 16 15 14 19 19 C 1.39331 * 119.87983 * 6.15122 * 18 16 15 20 20 C 1.37940 * 119.60293 * 180.02562 * 19 18 16 21 21 C 1.38086 * 119.93725 * 0.10379 * 20 19 18 22 22 C 1.39024 * 120.86171 * 359.97438 * 21 20 19 23 23 C 1.37428 * 119.75991 * 359.82787 * 22 21 20 24 24 C 1.50612 * 122.64344 * 180.40323 * 23 22 21 25 25 C 1.52725 * 110.61285 * 342.41467 * 24 23 22 26 26 C 1.53329 * 108.36195 * 50.97751 * 25 24 23 27 27 C 1.50653 * 117.69559 * 179.76482 * 22 21 20 28 28 C 1.47023 * 125.64728 * 179.97438 * 9 7 2 29 29 H 0.97004 * 119.99593 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36914 * 36.99562 * 10 9 7 31 31 H 1.08999 * 110.36933 * 274.66546 * 10 9 7 32 32 H 1.09004 * 111.00455 * 278.93590 * 11 10 9 33 33 H 1.09002 * 111.03827 * 155.09937 * 11 10 9 34 34 H 1.09001 * 109.47734 * 64.99608 * 14 12 11 35 35 H 1.09001 * 109.47226 * 304.99695 * 14 12 11 36 36 H 0.96998 * 119.99764 * 359.97438 * 15 14 12 37 37 H 1.08001 * 120.19557 * 359.97438 * 19 18 16 38 38 H 1.08007 * 120.02821 * 180.13334 * 20 19 18 39 39 H 1.08001 * 119.57243 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.25782 * 102.67436 * 24 23 22 41 41 H 1.09001 * 109.25519 * 222.15190 * 24 23 22 42 42 H 1.09004 * 109.64346 * 291.28237 * 25 24 23 43 43 H 1.08994 * 109.71443 * 170.72078 * 25 24 23 44 44 H 1.09006 * 109.67817 * 170.48296 * 26 25 24 45 45 H 1.08993 * 109.68523 * 49.97052 * 26 25 24 46 46 H 1.09002 * 109.24752 * 42.18480 * 27 22 21 47 47 H 1.09004 * 109.21372 * 282.75263 * 27 22 21 48 48 H 1.09006 * 109.87873 * 61.68195 * 28 9 7 49 49 H 1.09001 * 109.88759 * 300.51901 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3880 -0.0005 10 6 -0.1417 -2.5331 -0.0006 11 6 -0.4019 -3.9317 -0.6137 12 6 0.7780 -4.7525 -0.0294 13 1 0.5443 -5.1015 0.9764 14 6 1.1227 -5.9305 -0.9426 15 7 2.1563 -6.7533 -0.3093 16 6 2.6191 -7.8536 -0.9351 17 8 2.1786 -8.1635 -2.0248 18 6 3.6625 -8.6836 -0.2963 19 6 4.0739 -8.4015 1.0047 20 6 5.0482 -9.1792 1.5950 21 6 5.6104 -10.2284 0.8951 22 6 5.2074 -10.5163 -0.4040 23 6 4.2347 -9.7514 -1.0018 24 6 3.7432 -10.0108 -2.4016 25 6 4.7320 -10.8899 -3.1644 26 6 5.0451 -12.1215 -2.3063 27 6 5.8720 -11.6736 -1.1030 28 6 1.9315 -3.7275 -0.0016 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5995 -1.7582 -0.6156 31 1 -0.5275 -2.4876 1.0178 32 1 -0.3523 -3.8967 -1.7020 33 1 -1.3593 -4.3328 -0.2810 34 1 1.4916 -5.5547 -1.8970 35 1 0.2303 -6.5336 -1.1101 36 1 2.5075 -6.5062 0.5604 37 1 3.6331 -7.5782 1.5473 38 1 5.3707 -8.9680 2.6040 39 1 6.3731 -10.8333 1.3629 40 1 2.7772 -10.5137 -2.3560 41 1 3.6298 -9.0612 -2.9245 42 1 5.6488 -10.3313 -3.3533 43 1 4.2911 -11.2039 -4.1104 44 1 5.6127 -12.8434 -2.8936 45 1 4.1156 -12.5765 -1.9642 46 1 5.9715 -12.5054 -0.4057 47 1 6.8621 -11.3678 -1.4410 48 1 2.5281 -3.8651 0.9003 49 1 2.5579 -3.8504 -0.8851 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028563611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:07 Heat of formation + Delta-G solvation = -1.535931 kcal Electronic energy + Delta-G solvation = -27580.421050 eV Core-core repulsion = 23892.927249 eV Total energy + Delta-G solvation = -3687.493801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80533 -39.03030 -37.59811 -36.34007 -34.69021 -32.77556 -32.45059 -30.50520 -30.03854 -29.16031 -28.04451 -25.63762 -24.34504 -23.77051 -23.01153 -22.61848 -20.77392 -20.05851 -19.62190 -19.39183 -17.52252 -16.82455 -16.38638 -15.96541 -15.78679 -15.25281 -15.12808 -14.96345 -14.61568 -14.26626 -13.93047 -13.90986 -13.64172 -13.40496 -12.88715 -12.70635 -12.66453 -12.50771 -12.26151 -12.01529 -11.76024 -11.70315 -11.68381 -11.51122 -11.05360 -11.00810 -10.95740 -10.80237 -10.54710 -10.39780 -10.13002 -10.01166 -9.84182 -9.59591 -9.41295 -9.16361 -8.86575 -8.73925 -8.65710 -6.84199 -5.66200 -3.07835 0.68357 1.13435 2.80859 3.20952 3.39552 3.44409 3.46322 3.65694 4.33494 4.43355 4.48005 4.58385 4.68992 4.73719 4.84438 4.95136 5.00970 5.11270 5.16931 5.25035 5.32844 5.38733 5.40241 5.51726 5.56155 5.58513 5.61220 5.69291 5.72103 5.81251 5.87961 5.90296 6.05448 6.07009 6.10700 6.12167 6.15381 6.22611 6.34196 6.42466 6.50799 6.55289 6.58127 6.69863 6.72304 6.90102 7.50473 7.54850 7.62123 7.84922 8.23564 8.35787 9.21484 9.82406 10.47230 11.37798 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002316 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.334156 B =12086.549415 C =12508.795032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.720 5.720 16 C 0.553 3.447 17 O -0.536 6.536 18 C -0.137 4.137 19 C -0.086 4.086 20 C -0.131 4.131 21 C -0.096 4.096 22 C -0.091 4.091 23 C -0.014 4.014 24 C -0.084 4.084 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.078 4.078 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.107 0.893 31 H 0.012 0.988 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.017 0.983 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -24.565 0.367 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.415 6.415 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.015 4.015 24 C -0.121 4.121 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.115 4.115 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.035 0.965 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.726 -24.515 -0.405 26.025 hybrid contribution 0.686 1.066 0.789 1.493 sum 9.413 -23.449 0.384 25.270 Atomic orbital electron populations 1.69793 1.04894 1.24774 1.57645 1.24793 0.95740 0.97737 1.02452 0.86070 0.78503 0.83310 0.77603 1.21564 1.21641 1.20761 1.19078 0.90492 0.82497 1.43045 0.90548 1.44505 1.01995 0.99720 1.86837 1.21937 0.84668 0.92535 0.98180 1.23009 0.95497 0.98577 1.00347 1.22450 0.98344 0.94025 0.98606 0.90602 1.21483 0.90028 0.90975 0.96540 1.46041 1.41631 1.26380 1.23077 1.18269 0.81937 0.80675 0.85031 1.90726 1.59076 1.71267 1.20393 1.19993 1.00087 0.98489 0.95416 1.21285 0.96449 0.98829 0.93881 1.20995 0.97482 0.96091 1.00369 1.21345 0.98987 0.97174 0.93964 1.19597 0.97342 0.97692 0.94508 1.19731 0.93576 0.92161 0.96078 1.20788 0.98144 1.02051 0.91097 1.21667 0.99745 0.96309 0.98499 1.21568 1.00220 0.97824 0.96275 1.20455 0.98746 0.95209 0.97055 1.21337 0.93443 0.85976 0.97703 0.93719 0.87506 0.97008 0.91809 0.92110 0.91090 0.91508 0.76507 0.85493 0.85400 0.85852 0.90041 0.87968 0.91856 0.91365 0.91552 0.91628 0.90799 0.90603 0.96470 0.95778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.46 3.39 -170.06 -0.58 -16.04 16 10 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 11 C -0.14 -2.50 6.53 -24.58 -0.16 -2.66 16 12 C -0.11 -1.91 2.96 -88.79 -0.26 -2.17 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.13 1.97 5.02 -4.05 -0.02 1.95 16 15 N -0.72 -9.57 5.42 -61.25 -0.33 -9.90 16 16 C 0.55 7.88 7.67 -12.33 -0.09 7.78 16 17 O -0.54 -8.91 13.08 5.32 0.07 -8.84 16 18 C -0.14 -1.68 5.88 -104.83 -0.62 -2.30 16 19 C -0.09 -0.87 9.52 -39.28 -0.37 -1.25 16 20 C -0.13 -1.15 10.03 -39.75 -0.40 -1.55 16 21 C -0.10 -0.83 9.60 -39.35 -0.38 -1.20 16 22 C -0.09 -0.88 5.73 -104.65 -0.60 -1.48 16 23 C -0.01 -0.17 5.77 -104.23 -0.60 -0.77 16 24 C -0.08 -0.97 4.18 -28.07 -0.12 -1.09 16 25 C -0.12 -1.10 5.98 -26.70 -0.16 -1.26 16 26 C -0.12 -0.90 5.97 -26.71 -0.16 -1.06 16 27 C -0.08 -0.57 5.67 -28.05 -0.16 -0.73 16 28 C 0.14 2.88 6.75 -3.06 -0.02 2.86 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.56 6.52 -40.82 -0.27 4.29 16 37 H 0.13 1.08 6.43 -52.49 -0.34 0.74 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.12 0.75 8.05 -52.49 -0.42 0.33 16 40 H 0.08 0.99 7.99 -51.93 -0.42 0.58 16 41 H 0.10 1.40 6.02 -51.93 -0.31 1.09 16 42 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.02 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -31.84 379.99 -11.87 -43.70 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.90 Total: 2.70 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.39 Total: -8.10 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.35 Total: -52.29 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.84 -11.87 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028563611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.169 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds