Wall clock time and date at job start Tue Mar 31 2020 16:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99872 * 3 2 1 5 5 H 1.48492 * 109.47267 * 30.00070 * 3 2 1 6 6 H 1.48499 * 109.46993 * 150.00389 * 3 2 1 7 7 C 1.38810 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00418 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64831 * 359.97438 * 9 7 2 11 11 C 1.54317 * 107.27154 * 178.97242 * 10 9 7 12 12 C 1.55156 * 102.94373 * 337.80454 * 11 10 9 13 13 H 1.09000 * 111.00567 * 277.39097 * 12 11 10 14 14 C 1.52999 * 111.00322 * 153.57496 * 12 11 10 15 15 N 1.46496 * 109.47122 * 178.18217 * 14 12 11 16 16 C 1.34777 * 120.00175 * 180.02562 * 15 14 12 17 17 O 1.21553 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.47846 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.39327 * 119.87920 * 6.14692 * 18 16 15 20 20 C 1.37946 * 119.60353 * 179.63184 * 19 18 16 21 21 C 1.38084 * 119.93171 * 0.65029 * 20 19 18 22 22 C 1.39026 * 120.86130 * 359.75720 * 21 20 19 23 23 C 1.37421 * 119.76480 * 359.81680 * 22 21 20 24 24 C 1.50609 * 122.64281 * 180.41554 * 23 22 21 25 25 C 1.52735 * 110.59571 * 342.33450 * 24 23 22 26 26 C 1.53335 * 108.35636 * 51.02990 * 25 24 23 27 27 C 1.50657 * 117.69967 * 179.64259 * 22 21 20 28 28 C 1.47462 * 125.62983 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88349 * 59.54863 * 10 9 7 31 31 H 1.09005 * 110.00838 * 298.46266 * 10 9 7 32 32 H 1.09000 * 110.72124 * 219.44077 * 11 10 9 33 33 H 1.09003 * 110.87167 * 96.23980 * 11 10 9 34 34 H 1.08996 * 109.47408 * 298.17964 * 14 12 11 35 35 H 1.09000 * 109.47114 * 58.18354 * 14 12 11 36 36 H 0.97000 * 119.99867 * 359.97438 * 15 14 12 37 37 H 1.07993 * 120.19686 * 359.88356 * 19 18 16 38 38 H 1.08000 * 120.03524 * 180.38169 * 20 19 18 39 39 H 1.08000 * 119.57001 * 179.79142 * 21 20 19 40 40 H 1.09001 * 109.25393 * 102.61902 * 24 23 22 41 41 H 1.09002 * 109.25238 * 222.04818 * 24 23 22 42 42 H 1.09005 * 109.69093 * 170.74601 * 25 24 23 43 43 H 1.09001 * 109.69279 * 291.27530 * 25 24 23 44 44 H 1.08997 * 109.68469 * 49.90048 * 26 25 24 45 45 H 1.09008 * 109.68227 * 170.41387 * 26 25 24 46 46 H 1.09004 * 109.24908 * 42.17145 * 27 22 21 47 47 H 1.08997 * 109.21862 * 282.73669 * 27 22 21 48 48 H 1.08996 * 110.35021 * 85.25478 * 28 9 7 49 49 H 1.08998 * 110.40619 * 322.91798 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5329 0.0005 11 6 -0.4483 -4.0442 -0.0263 12 6 0.8517 -4.6560 -0.6122 13 1 0.8555 -4.5966 -1.7005 14 6 1.0371 -6.1008 -0.1441 15 7 2.2486 -6.6587 -0.7501 16 6 2.6144 -7.9274 -0.4798 17 8 1.9394 -8.6086 0.2671 18 6 3.8367 -8.4906 -1.0918 19 6 4.6771 -7.6721 -1.8435 20 6 5.8200 -8.2018 -2.4056 21 6 6.1172 -9.5391 -2.2321 22 6 5.2801 -10.3653 -1.4908 23 6 4.1430 -9.8477 -0.9184 24 6 3.1961 -10.6810 -0.0956 25 6 3.4234 -12.1685 -0.3570 26 6 4.9189 -12.4646 -0.1931 27 6 5.6684 -11.8145 -1.3541 28 6 1.9342 -3.7313 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5582 -2.0520 -0.8826 31 1 -0.5559 -2.0842 0.9015 32 1 -1.2988 -4.2515 -0.6757 33 1 -0.6323 -4.4207 0.9799 34 1 1.1312 -6.1218 0.9416 35 1 0.1738 -6.6940 -0.4455 36 1 2.7870 -6.1153 -1.3464 37 1 4.4372 -6.6283 -1.9819 38 1 6.4795 -7.5722 -2.9845 39 1 7.0118 -9.9484 -2.6776 40 1 3.3600 -10.4728 0.9617 41 1 2.1699 -10.4228 -0.3572 42 1 2.8515 -12.7589 0.3590 43 1 3.1086 -12.4156 -1.3710 44 1 5.2738 -12.0508 0.7508 45 1 5.0835 -13.5421 -0.2064 46 1 6.7411 -11.8835 -1.1729 47 1 5.4256 -12.3397 -2.2777 48 1 2.1684 -4.0421 1.0165 49 1 2.8329 -3.7408 -0.6183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028563612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:10 Heat of formation + Delta-G solvation = -3.040354 kcal Electronic energy + Delta-G solvation = -27568.935222 eV Core-core repulsion = 23881.376184 eV Total energy + Delta-G solvation = -3687.559038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.80392 -39.02737 -37.59508 -36.33929 -34.68807 -32.77136 -32.44280 -30.50282 -30.03877 -29.15940 -28.07089 -25.63271 -24.34095 -23.77484 -23.01582 -22.62942 -20.73325 -20.01881 -19.73088 -19.38665 -17.54416 -16.79123 -16.38971 -15.97118 -15.58257 -15.48479 -15.22772 -14.70545 -14.49036 -14.36438 -14.02399 -13.90261 -13.65583 -13.34472 -12.96099 -12.81620 -12.68476 -12.34774 -12.23871 -12.00688 -11.99102 -11.75202 -11.69206 -11.38300 -11.06428 -11.03225 -10.91219 -10.80180 -10.55006 -10.34496 -10.13817 -9.98894 -9.88066 -9.66752 -9.45937 -9.16186 -8.86234 -8.73722 -8.60923 -6.84187 -5.72119 -3.05744 0.68793 1.14063 2.80978 3.20889 3.38982 3.44001 3.46135 3.65698 4.33658 4.43400 4.48345 4.58871 4.68520 4.74661 4.84633 4.95057 5.01164 5.11798 5.16177 5.23250 5.31908 5.38632 5.41997 5.53850 5.55843 5.58265 5.61213 5.68023 5.71657 5.81287 5.88729 5.90098 6.03436 6.04361 6.06753 6.12951 6.15018 6.23166 6.33897 6.42517 6.48075 6.50963 6.53040 6.68279 6.70345 6.90309 7.54621 7.55343 7.62441 7.82033 8.23209 8.25249 9.21267 9.81620 10.47724 11.39643 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.002351 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.666708 B =11908.419430 C =12908.797764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.133 3.867 15 N -0.720 5.720 16 C 0.553 3.447 17 O -0.536 6.536 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.131 4.131 21 C -0.096 4.096 22 C -0.092 4.092 23 C -0.015 4.015 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.077 4.077 28 C 0.142 3.858 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.020 0.980 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -24.033 -4.870 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.010 3.990 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.416 6.416 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.016 4.016 24 C -0.120 4.120 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.114 4.114 28 C 0.016 3.984 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.037 0.963 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.122 -24.241 -4.312 26.257 hybrid contribution 0.810 1.439 -0.393 1.698 sum 9.932 -22.802 -4.705 25.312 Atomic orbital electron populations 1.69964 1.04880 1.25036 1.57065 1.24811 0.95735 0.97693 1.02281 0.86116 0.78586 0.83502 0.77544 1.21612 1.21661 1.20715 1.19051 0.90406 0.82447 1.43809 0.90503 1.44487 1.01735 0.99852 1.87188 1.21140 0.84301 0.88166 1.01135 1.22854 0.95393 0.99382 0.99707 1.22623 0.98667 0.92024 1.00503 0.90246 1.21416 0.85993 0.93473 0.98131 1.46025 1.28162 1.13281 1.49616 1.18267 0.84664 0.81697 0.81244 1.90724 1.55076 1.58835 1.36918 1.19990 0.96851 0.94567 1.02620 1.21305 0.94174 0.99471 0.95444 1.21005 0.97473 0.95470 1.00956 1.21348 0.99009 0.93700 0.97402 1.19593 0.94565 0.96213 0.98816 1.19723 0.94165 0.92400 0.95298 1.20783 0.99658 0.92241 0.99353 1.21666 0.95978 0.96646 1.01885 1.21573 0.95751 1.00162 0.98439 1.20452 1.00283 0.91291 0.99414 1.21579 0.93907 0.86168 0.96758 0.93746 0.93560 0.93889 0.91978 0.92176 0.91212 0.91555 0.76419 0.85415 0.85367 0.85856 0.89981 0.88077 0.91400 0.91915 0.91577 0.91555 0.90788 0.90649 0.96277 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.61 -15.37 3.40 -170.04 -0.58 -15.95 16 10 C 0.18 4.27 5.37 -3.07 -0.02 4.26 16 11 C -0.13 -2.44 6.42 -24.90 -0.16 -2.60 16 12 C -0.12 -1.95 3.07 -88.47 -0.27 -2.22 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.93 5.12 -4.04 -0.02 1.91 16 15 N -0.72 -9.47 5.40 -61.25 -0.33 -9.80 16 16 C 0.55 7.79 7.67 -12.33 -0.09 7.69 16 17 O -0.54 -8.78 13.09 5.32 0.07 -8.71 16 18 C -0.14 -1.68 5.88 -104.83 -0.62 -2.30 16 19 C -0.09 -0.88 9.52 -39.28 -0.37 -1.25 16 20 C -0.13 -1.17 10.03 -39.74 -0.40 -1.57 16 21 C -0.10 -0.83 9.60 -39.35 -0.38 -1.21 16 22 C -0.09 -0.88 5.73 -104.65 -0.60 -1.48 16 23 C -0.01 -0.17 5.77 -104.23 -0.60 -0.77 16 24 C -0.08 -0.95 4.18 -28.06 -0.12 -1.07 16 25 C -0.12 -1.06 5.98 -26.69 -0.16 -1.22 16 26 C -0.12 -0.89 5.98 -26.70 -0.16 -1.05 16 27 C -0.08 -0.56 5.67 -28.05 -0.16 -0.72 16 28 C 0.14 2.84 6.56 -2.51 -0.02 2.83 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 31 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.07 1.08 8.03 -51.93 -0.42 0.67 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.40 4.60 6.48 -40.82 -0.26 4.34 16 37 H 0.13 1.13 6.43 -52.49 -0.34 0.79 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.76 8.05 -52.49 -0.42 0.34 16 40 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 41 H 0.10 1.33 6.04 -51.93 -0.31 1.01 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 45 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 46 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -31.98 380.79 -11.91 -43.89 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.96 Total: 1.96 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.39 Total: -7.64 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.34 Total: -52.28 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.98 -11.91 -43.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028563612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.849 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds