Wall clock time and date at job start Tue Mar 31 2020 16:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47095 * 269.99872 * 3 2 1 5 5 H 1.48492 * 109.47267 * 30.00070 * 3 2 1 6 6 H 1.48499 * 109.46993 * 150.00389 * 3 2 1 7 7 C 1.38810 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00418 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64831 * 359.97438 * 9 7 2 11 11 C 1.54317 * 107.27154 * 178.97242 * 10 9 7 12 12 C 1.55156 * 102.94373 * 337.80454 * 11 10 9 13 13 H 1.09000 * 111.00567 * 277.39097 * 12 11 10 14 14 C 1.52999 * 111.00322 * 153.57496 * 12 11 10 15 15 N 1.46496 * 109.47122 * 178.18217 * 14 12 11 16 16 C 1.34777 * 120.00175 * 180.02562 * 15 14 12 17 17 O 1.21553 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.47846 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.39327 * 119.87920 * 6.14692 * 18 16 15 20 20 C 1.37946 * 119.60353 * 179.63184 * 19 18 16 21 21 C 1.38084 * 119.93171 * 0.65029 * 20 19 18 22 22 C 1.39026 * 120.86130 * 359.75720 * 21 20 19 23 23 C 1.37421 * 119.76480 * 359.81680 * 22 21 20 24 24 C 1.50609 * 122.64281 * 180.41554 * 23 22 21 25 25 C 1.52735 * 110.59571 * 342.33450 * 24 23 22 26 26 C 1.53335 * 108.35636 * 51.02990 * 25 24 23 27 27 C 1.50657 * 117.69967 * 179.64259 * 22 21 20 28 28 C 1.47462 * 125.62983 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88349 * 59.54863 * 10 9 7 31 31 H 1.09005 * 110.00838 * 298.46266 * 10 9 7 32 32 H 1.09000 * 110.72124 * 219.44077 * 11 10 9 33 33 H 1.09003 * 110.87167 * 96.23980 * 11 10 9 34 34 H 1.08996 * 109.47408 * 298.17964 * 14 12 11 35 35 H 1.09000 * 109.47114 * 58.18354 * 14 12 11 36 36 H 0.97000 * 119.99867 * 359.97438 * 15 14 12 37 37 H 1.07993 * 120.19686 * 359.88356 * 19 18 16 38 38 H 1.08000 * 120.03524 * 180.38169 * 20 19 18 39 39 H 1.08000 * 119.57001 * 179.79142 * 21 20 19 40 40 H 1.09001 * 109.25393 * 102.61902 * 24 23 22 41 41 H 1.09002 * 109.25238 * 222.04818 * 24 23 22 42 42 H 1.09005 * 109.69093 * 170.74601 * 25 24 23 43 43 H 1.09001 * 109.69279 * 291.27530 * 25 24 23 44 44 H 1.08997 * 109.68469 * 49.90048 * 26 25 24 45 45 H 1.09008 * 109.68227 * 170.41387 * 26 25 24 46 46 H 1.09004 * 109.24908 * 42.17145 * 27 22 21 47 47 H 1.08997 * 109.21862 * 282.73669 * 27 22 21 48 48 H 1.08996 * 110.35021 * 85.25478 * 28 9 7 49 49 H 1.08998 * 110.40619 * 322.91798 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1374 -2.5329 0.0005 11 6 -0.4483 -4.0442 -0.0263 12 6 0.8517 -4.6560 -0.6122 13 1 0.8555 -4.5966 -1.7005 14 6 1.0371 -6.1008 -0.1441 15 7 2.2486 -6.6587 -0.7501 16 6 2.6144 -7.9274 -0.4798 17 8 1.9394 -8.6086 0.2671 18 6 3.8367 -8.4906 -1.0918 19 6 4.6771 -7.6721 -1.8435 20 6 5.8200 -8.2018 -2.4056 21 6 6.1172 -9.5391 -2.2321 22 6 5.2801 -10.3653 -1.4908 23 6 4.1430 -9.8477 -0.9184 24 6 3.1961 -10.6810 -0.0956 25 6 3.4234 -12.1685 -0.3570 26 6 4.9189 -12.4646 -0.1931 27 6 5.6684 -11.8145 -1.3541 28 6 1.9342 -3.7313 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5582 -2.0520 -0.8826 31 1 -0.5559 -2.0842 0.9015 32 1 -1.2988 -4.2515 -0.6757 33 1 -0.6323 -4.4207 0.9799 34 1 1.1312 -6.1218 0.9416 35 1 0.1738 -6.6940 -0.4455 36 1 2.7870 -6.1153 -1.3464 37 1 4.4372 -6.6283 -1.9819 38 1 6.4795 -7.5722 -2.9845 39 1 7.0118 -9.9484 -2.6776 40 1 3.3600 -10.4728 0.9617 41 1 2.1699 -10.4228 -0.3572 42 1 2.8515 -12.7589 0.3590 43 1 3.1086 -12.4156 -1.3710 44 1 5.2738 -12.0508 0.7508 45 1 5.0835 -13.5421 -0.2064 46 1 6.7411 -11.8835 -1.1729 47 1 5.4256 -12.3397 -2.2777 48 1 2.1684 -4.0421 1.0165 49 1 2.8329 -3.7408 -0.6183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028563612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:09 Heat of formation + Delta-G solvation = -20.478362 kcal Electronic energy + Delta-G solvation = -27569.691391 eV Core-core repulsion = 23881.376184 eV Total energy + Delta-G solvation = -3688.315207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68084 -40.06770 -39.13381 -37.06030 -36.04567 -34.34442 -33.44803 -31.74428 -31.14903 -30.36734 -29.41166 -27.31009 -25.66164 -24.71380 -23.91785 -23.47036 -22.10165 -21.59350 -21.04514 -20.15280 -18.92710 -18.34809 -17.42354 -16.95140 -16.66618 -16.57238 -16.44281 -16.02109 -15.74995 -15.58070 -15.19158 -14.79961 -14.65319 -14.54156 -14.08159 -13.97153 -13.81332 -13.62013 -13.40857 -13.35426 -13.06206 -12.92650 -12.79011 -12.69621 -12.59416 -12.40632 -12.03340 -11.95323 -11.86622 -11.71708 -11.65835 -11.55622 -11.47442 -11.20641 -10.71140 -10.49728 -10.18164 -9.70385 -9.51636 -8.90659 -7.85490 -5.21215 -0.12132 0.40625 1.45459 1.47490 1.56113 1.86579 2.14576 2.49070 2.83698 3.32667 3.58068 3.64306 3.69646 3.76918 3.84852 3.99980 4.02357 4.06289 4.07276 4.20171 4.26876 4.39296 4.43007 4.48786 4.60854 4.66081 4.68021 4.72790 4.78514 4.87998 4.91837 4.95824 4.97444 5.04123 5.06441 5.06660 5.13410 5.21921 5.27756 5.36884 5.41080 5.44931 5.45940 5.48317 5.52567 5.66842 5.71059 5.77389 5.99134 6.19522 6.51117 7.09838 7.17698 7.77372 8.41884 9.25089 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.021875 B = 0.002351 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.666708 B =11908.419430 C =12908.797764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.090 0.910 14 C 0.146 3.854 15 N -0.714 5.714 16 C 0.550 3.450 17 O -0.567 6.567 18 C -0.160 4.160 19 C -0.092 4.092 20 C -0.132 4.132 21 C -0.092 4.092 22 C -0.097 4.097 23 C -0.036 4.036 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.077 4.077 28 C 0.138 3.862 29 H 0.246 0.754 30 H 0.013 0.987 31 H 0.004 0.996 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.409 0.591 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.017 0.983 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 -25.784 -6.318 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.161 4.161 12 C -0.115 4.115 13 H 0.108 0.892 14 C 0.022 3.978 15 N -0.366 5.366 16 C 0.340 3.660 17 O -0.448 6.448 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.097 4.097 23 C -0.037 4.037 24 C -0.116 4.116 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.114 4.114 28 C 0.013 3.987 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.246 0.754 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.034 0.966 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.718 -26.018 -5.773 29.113 hybrid contribution 0.065 1.949 0.061 1.951 sum 11.783 -24.068 -5.712 27.400 Atomic orbital electron populations 1.70193 1.06342 1.25257 1.58366 1.25684 0.96643 1.01139 1.02718 0.85064 0.77594 0.79036 0.77554 1.21048 1.22265 1.19382 1.19474 0.91044 0.83736 1.42846 0.89863 1.44817 1.02494 1.01203 1.87002 1.20912 0.83817 0.91769 0.97703 1.22718 0.97121 0.95000 1.01272 1.22420 0.96089 0.92295 1.00718 0.89203 1.21169 0.87030 0.92086 0.97519 1.45916 1.27833 1.13260 1.49603 1.18645 0.85071 0.81516 0.80790 1.90712 1.56200 1.59576 1.38342 1.19971 0.96789 0.95349 1.04225 1.21498 0.94472 0.99866 0.95198 1.21366 0.97049 0.96107 1.00430 1.21749 0.99488 0.93475 0.96257 1.19929 0.93807 0.97753 0.98209 1.19880 0.95229 0.92333 0.96239 1.20630 0.98431 0.94316 0.98217 1.21647 0.97431 0.94618 1.02159 1.21572 0.94419 1.01454 0.98256 1.20537 1.01291 0.89703 0.99824 1.21751 0.95345 0.84469 0.97115 0.94440 0.96843 0.97800 0.89555 0.91087 0.92247 0.90638 0.75353 0.84378 0.82826 0.82791 0.91967 0.90617 0.90981 0.91563 0.92434 0.89482 0.88890 0.89313 0.96551 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 10.31 21.65 0.22 -57.68 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.63 -32.27 3.40 -691.89 -2.35 -34.62 16 10 C 0.18 9.09 5.37 86.73 0.47 9.55 16 11 C -0.12 -4.36 6.42 31.78 0.20 -4.16 16 12 C -0.10 -3.03 3.07 -9.40 -0.03 -3.06 16 13 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 14 C 0.15 4.05 5.12 86.38 0.44 4.49 16 15 N -0.71 -18.16 5.40 -465.99 -2.51 -20.68 16 16 C 0.55 15.55 7.67 86.79 0.67 16.21 16 17 O -0.57 -19.16 13.09 -3.88 -0.05 -19.21 16 18 C -0.16 -3.85 5.88 -20.00 -0.12 -3.97 16 19 C -0.09 -1.73 9.52 22.46 0.21 -1.52 16 20 C -0.13 -1.95 10.03 22.16 0.22 -1.73 16 21 C -0.09 -1.27 9.60 22.42 0.22 -1.05 16 22 C -0.10 -1.65 5.73 -19.88 -0.11 -1.76 16 23 C -0.04 -0.81 5.77 -19.61 -0.11 -0.92 16 24 C -0.08 -1.85 4.18 29.73 0.12 -1.73 16 25 C -0.12 -1.99 5.98 30.62 0.18 -1.81 16 26 C -0.12 -1.51 5.98 30.61 0.18 -1.33 16 27 C -0.08 -0.88 5.67 29.74 0.17 -0.71 16 28 C 0.14 5.43 6.56 86.85 0.57 6.00 16 29 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 31 H 0.00 0.21 7.51 -2.38 -0.02 0.19 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 8.81 6.48 -92.71 -0.60 8.21 16 37 H 0.14 2.18 6.43 -2.91 -0.02 2.17 16 38 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.15 1.17 8.05 -2.91 -0.02 1.14 16 40 H 0.06 1.63 7.98 -2.39 -0.02 1.61 16 41 H 0.08 2.12 6.04 -2.39 -0.01 2.11 16 42 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 45 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.09 0.74 8.13 -2.38 -0.02 0.73 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 49 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.17 380.79 2.29 -69.88 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.34 Total: 18.10 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 4.61 Total: -3.72 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.64 Total: -112.97 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.17 2.29 -69.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028563612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.400 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds