Wall clock time and date at job start Tue Mar 31 2020 16:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00099 * 2 1 4 4 H 1.48499 * 109.46775 * 264.66981 * 3 2 1 5 5 H 1.48495 * 109.46985 * 24.66836 * 3 2 1 6 6 H 1.48493 * 109.47295 * 144.66910 * 3 2 1 7 7 C 1.38812 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 336.23574 * 7 2 1 9 9 N 1.36934 * 120.00021 * 156.24659 * 7 2 1 10 10 C 1.47426 * 125.64580 * 162.04932 * 9 7 2 11 11 C 1.54910 * 104.83206 * 155.90474 * 10 9 7 12 12 C 1.55160 * 101.58309 * 37.00678 * 11 10 9 13 13 H 1.09001 * 110.71709 * 83.03505 * 12 11 10 14 14 C 1.52998 * 110.72281 * 206.13708 * 12 11 10 15 15 N 1.46502 * 109.47048 * 182.56316 * 14 12 11 16 16 C 1.34775 * 119.99790 * 180.02562 * 15 14 12 17 17 O 1.21551 * 120.00200 * 359.97438 * 16 15 14 18 18 C 1.47847 * 119.99821 * 179.97438 * 16 15 14 19 19 C 1.39605 * 120.26803 * 359.97438 * 18 16 15 20 20 C 1.37635 * 119.61669 * 179.82290 * 19 18 16 21 21 C 1.39075 * 120.75486 * 359.93620 * 20 19 18 22 22 C 1.37837 * 119.90643 * 359.90223 * 21 20 19 23 23 C 1.38648 * 119.81997 * 0.22447 * 22 21 20 24 24 C 1.50660 * 122.55578 * 180.40251 * 22 21 20 25 25 C 1.52720 * 110.59927 * 342.29078 * 24 22 21 26 26 C 1.53329 * 108.36975 * 51.11990 * 25 24 22 27 27 C 1.50684 * 117.59992 * 179.68935 * 21 20 19 28 28 C 1.47315 * 125.61869 * 342.27105 * 9 7 2 29 29 H 0.97003 * 119.99659 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.37346 * 37.06680 * 10 9 7 31 31 H 1.08998 * 110.46393 * 274.79023 * 10 9 7 32 32 H 1.09000 * 111.00631 * 278.93681 * 11 10 9 33 33 H 1.09004 * 111.04023 * 155.09890 * 11 10 9 34 34 H 1.08996 * 109.46984 * 62.56109 * 14 12 11 35 35 H 1.09001 * 109.47088 * 302.55604 * 14 12 11 36 36 H 0.97002 * 120.00175 * 359.97438 * 15 14 12 37 37 H 1.08001 * 120.19382 * 359.80553 * 19 18 16 38 38 H 1.07996 * 119.62093 * 179.90623 * 20 19 18 39 39 H 1.07999 * 119.78219 * 179.79350 * 23 22 21 40 40 H 1.09000 * 109.24913 * 222.00326 * 24 22 21 41 41 H 1.09001 * 109.25190 * 102.57955 * 24 22 21 42 42 H 1.09000 * 109.69134 * 291.39634 * 25 24 22 43 43 H 1.08999 * 109.71767 * 170.85089 * 25 24 22 44 44 H 1.08998 * 109.68496 * 170.31989 * 26 25 24 45 45 H 1.09000 * 109.71291 * 49.78048 * 26 25 24 46 46 H 1.08999 * 109.24634 * 282.75826 * 27 21 20 47 47 H 1.08996 * 109.24992 * 42.17977 * 27 21 20 48 48 H 1.09001 * 110.06519 * 61.67858 * 28 9 7 49 49 H 1.09006 * 109.84565 * 300.42339 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6103 1.9813 -1.3940 5 1 1.3959 2.6825 0.5843 6 1 3.4868 1.4754 0.8096 7 6 2.0102 -1.2021 -0.0005 8 1 1.5388 -2.0980 0.3760 9 7 3.2926 -1.2522 -0.4782 10 6 4.2677 -2.3250 -0.2109 11 6 5.2609 -2.2630 -1.3981 12 6 5.3571 -0.7340 -1.6442 13 1 6.0753 -0.2782 -0.9626 14 6 5.7333 -0.4424 -3.0983 15 7 5.8763 1.0036 -3.2851 16 6 6.2057 1.4975 -4.4951 17 8 6.3845 0.7431 -5.4312 18 6 6.3495 2.9568 -4.6837 19 6 6.1449 3.8283 -3.6124 20 6 6.2859 5.1842 -3.8022 21 6 6.6311 5.6958 -5.0485 22 6 6.8377 4.8403 -6.1093 23 6 6.6958 3.4728 -5.9300 24 6 7.2221 5.3287 -7.4818 25 6 6.9183 6.8184 -7.6265 26 6 7.5431 7.5568 -6.4369 27 6 6.7593 7.1916 -5.1780 28 6 3.9269 -0.2402 -1.3406 29 1 -0.4850 0.8401 -0.0004 30 1 3.7685 -3.2936 -0.1843 31 1 4.7882 -2.1414 0.7290 32 1 4.8577 -2.7747 -2.2720 33 1 6.2305 -2.6756 -1.1192 34 1 4.9516 -0.8184 -3.7582 35 1 6.6767 -0.9343 -3.3352 36 1 5.7333 1.6057 -2.5381 37 1 5.8772 3.4409 -2.6405 38 1 6.1261 5.8586 -2.9739 39 1 6.8546 2.8033 -6.7624 40 1 6.6594 4.7726 -8.2317 41 1 8.2881 5.1626 -7.6369 42 1 5.8395 6.9746 -7.6302 43 1 7.3465 7.1923 -8.5566 44 1 7.4897 8.6327 -6.6034 45 1 8.5840 7.2543 -6.3219 46 1 5.7647 7.6340 -5.2329 47 1 7.2791 7.5847 -4.3044 48 1 3.9677 0.7188 -0.8241 49 1 3.3645 -0.1399 -2.2689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028969460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:13 Heat of formation + Delta-G solvation = -2.330801 kcal Electronic energy + Delta-G solvation = -27595.745675 eV Core-core repulsion = 23908.217405 eV Total energy + Delta-G solvation = -3687.528270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.62111 -39.35878 -37.98485 -36.14500 -34.77258 -32.85954 -32.61423 -31.11505 -30.11598 -29.18373 -28.64573 -25.98381 -24.42964 -23.58110 -23.24036 -22.37742 -21.12846 -20.30501 -20.28476 -19.26541 -17.72767 -16.92906 -16.45567 -16.09193 -16.01937 -15.43396 -15.06850 -14.95356 -14.66807 -14.35506 -14.19823 -13.82566 -13.66101 -13.51237 -13.39342 -13.13000 -12.81569 -12.79395 -12.49731 -12.49261 -11.99218 -11.72384 -11.67154 -11.56305 -11.31983 -11.27475 -10.97697 -10.87759 -10.76408 -10.71782 -10.59709 -10.24463 -9.88892 -9.87642 -9.36817 -9.09995 -8.98789 -8.77146 -8.64632 -7.08570 -5.96772 -3.24937 0.68340 1.13440 2.76852 3.16473 3.29293 3.40815 3.46310 3.68795 4.25709 4.29124 4.51858 4.52054 4.59248 4.72099 4.73603 4.78172 4.88276 4.95889 5.02133 5.06715 5.14636 5.16859 5.21390 5.23734 5.41945 5.44864 5.49263 5.52657 5.61672 5.62159 5.66568 5.75081 5.80266 5.82324 5.86662 5.92999 6.01683 6.06915 6.12124 6.19027 6.26144 6.33730 6.35862 6.46333 6.58378 6.69082 6.72412 6.77331 7.49988 7.69290 8.20096 8.29642 8.81733 9.67315 10.16338 11.19895 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002916 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.826379 B = 9599.883858 C =10839.680339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.722 5.722 16 C 0.558 3.442 17 O -0.542 6.542 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.054 4.054 22 C -0.087 4.087 23 C -0.059 4.059 24 C -0.080 4.080 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.084 4.084 28 C 0.124 3.876 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.023 0.977 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.347 13.477 -11.901 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.373 5.373 16 C 0.345 3.655 17 O -0.420 6.420 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.145 4.145 21 C -0.054 4.054 22 C -0.087 4.087 23 C -0.078 4.078 24 C -0.117 4.117 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.001 4.001 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.206 12.978 -12.508 25.619 hybrid contribution 0.210 1.281 0.689 1.469 sum 18.416 14.259 -11.819 26.118 Atomic orbital electron populations 1.69858 1.05524 1.26552 1.53069 1.24964 0.95151 0.97370 1.00351 0.86898 0.78925 0.84928 0.77496 1.21314 1.23211 1.20716 1.18678 0.85235 0.95646 1.37357 0.88912 1.44859 1.10885 1.22163 1.55790 1.21614 0.90147 0.93086 0.94457 1.22730 0.99507 0.93744 0.99998 1.22469 0.98242 0.98128 0.94782 0.90172 1.21450 1.01718 0.79540 0.96400 1.45988 1.70550 1.09123 1.11646 1.18242 0.76721 0.87794 0.82714 1.90750 1.50918 1.59818 1.40524 1.19870 1.05697 0.92887 0.95209 1.21265 0.97633 0.93562 0.98168 1.21103 1.01160 0.95095 0.97128 1.19837 0.97277 0.95597 0.92709 1.19580 1.01052 0.92532 0.95579 1.21267 0.95417 0.94574 0.96505 1.20476 1.01793 0.96323 0.93119 1.21557 1.01356 0.94593 0.98304 1.21554 0.99685 1.00118 0.94414 1.20546 1.01311 0.91282 0.98979 1.21764 0.90769 0.92762 0.94775 0.92720 0.93116 0.95768 0.90840 0.91193 0.90775 0.91159 0.76439 0.85603 0.85447 0.84732 0.90485 0.90480 0.91478 0.91308 0.91338 0.91530 0.90237 0.90474 0.95969 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 2 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 3 Si 0.89 22.54 24.38 -169.99 -4.15 18.39 16 4 H -0.29 -6.96 6.83 56.52 0.39 -6.57 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.28 -6.95 6.87 56.52 0.39 -6.56 16 7 C -0.24 -6.92 10.56 -15.06 -0.16 -7.07 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.61 -14.72 3.22 -169.83 -0.55 -15.27 16 10 C 0.13 2.54 7.23 -2.53 -0.02 2.52 16 11 C -0.12 -1.84 6.54 -24.58 -0.16 -2.00 16 12 C -0.12 -1.87 2.98 -88.79 -0.26 -2.13 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 15 N -0.72 -10.59 5.38 -61.25 -0.33 -10.92 16 16 C 0.56 8.72 7.78 -12.33 -0.10 8.63 16 17 O -0.54 -9.95 16.35 5.32 0.09 -9.87 16 18 C -0.13 -1.80 5.87 -105.07 -0.62 -2.42 16 19 C -0.09 -1.03 9.54 -39.29 -0.37 -1.41 16 20 C -0.13 -1.31 9.59 -39.49 -0.38 -1.68 16 21 C -0.05 -0.53 5.75 -104.47 -0.60 -1.13 16 22 C -0.09 -0.90 5.73 -104.64 -0.60 -1.50 16 23 C -0.06 -0.72 9.16 -39.05 -0.36 -1.08 16 24 C -0.08 -0.62 5.66 -28.05 -0.16 -0.78 16 25 C -0.12 -0.77 5.98 -26.70 -0.16 -0.93 16 26 C -0.12 -0.73 5.98 -26.70 -0.16 -0.89 16 27 C -0.08 -0.60 5.66 -28.03 -0.16 -0.76 16 28 C 0.12 2.65 4.55 -2.90 -0.01 2.63 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 5.35 6.45 -40.82 -0.26 5.08 16 37 H 0.13 1.34 6.43 -52.49 -0.34 1.01 16 38 H 0.13 1.05 8.05 -52.49 -0.42 0.62 16 39 H 0.13 1.64 7.63 -52.49 -0.40 1.24 16 40 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 48 H 0.02 0.51 3.55 -51.93 -0.18 0.33 16 49 H 0.04 0.99 7.73 -51.93 -0.40 0.59 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -33.98 381.07 -10.73 -44.71 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.92 Total: 2.17 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -4.39 Total: -7.55 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.10 Total: -53.60 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.15 Total: 18.39 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.98 -10.73 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028969460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.375 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds