Wall clock time and date at job start Tue Mar 31 2020 16:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21551 * 120.00532 * 0.02562 * 16 15 14 18 18 C 1.47848 * 119.99564 * 180.02562 * 16 15 14 19 19 C 1.39607 * 120.27069 * 0.02562 * 18 16 15 20 20 C 1.37627 * 119.62053 * 180.10040 * 19 18 16 21 21 C 1.39085 * 120.75584 * 359.97438 * 20 19 18 22 22 C 1.37833 * 119.89743 * 359.77908 * 21 20 19 23 23 C 1.38655 * 119.82807 * 0.09623 * 22 21 20 24 24 C 1.50664 * 122.54792 * 180.47562 * 22 21 20 25 25 C 1.52718 * 110.59487 * 342.09498 * 24 22 21 26 26 C 1.53321 * 108.37019 * 51.17203 * 25 24 22 27 27 C 1.50682 * 117.60894 * 179.40542 * 21 20 19 28 28 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 29 29 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 35 35 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 36 36 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 37 37 H 1.07996 * 120.19147 * 0.07324 * 19 18 16 38 38 H 1.07996 * 119.62749 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.78044 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.25188 * 102.38163 * 24 22 21 41 41 H 1.09001 * 109.25350 * 221.80602 * 24 22 21 42 42 H 1.09003 * 109.68677 * 170.89442 * 25 24 22 43 43 H 1.09005 * 109.68405 * 291.41539 * 25 24 22 44 44 H 1.09001 * 109.68132 * 49.81813 * 26 25 24 45 45 H 1.09008 * 109.67802 * 170.32165 * 26 25 24 46 46 H 1.08997 * 109.24899 * 282.80335 * 27 21 20 47 47 H 1.09001 * 109.24316 * 42.22101 * 27 21 20 48 48 H 1.08998 * 109.88206 * 59.48273 * 28 9 7 49 49 H 1.09007 * 109.88177 * 298.32145 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1756 -8.1699 2.0144 18 6 3.6594 -8.6869 0.2849 19 6 4.1701 -8.3333 -0.9654 20 6 5.1393 -9.1159 -1.5504 21 6 5.6161 -10.2549 -0.9101 22 6 5.1195 -10.6064 0.3266 23 6 4.1447 -9.8237 0.9264 24 6 5.6002 -11.8208 1.0778 25 6 6.3193 -12.7848 0.1366 26 6 7.3799 -11.9983 -0.6426 27 6 6.6674 -11.0672 -1.6210 28 6 1.9319 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5290 -2.4860 -1.0162 31 1 -0.5991 -1.7588 0.6182 32 1 -1.3585 -4.3328 0.2810 33 1 -0.3505 -3.8984 1.7017 34 1 1.4902 -5.5610 1.8930 35 1 0.2283 -6.5362 1.1025 36 1 2.5066 -6.5062 -0.5666 37 1 3.8065 -7.4508 -1.4708 38 1 5.5348 -8.8422 -2.5174 39 1 3.7564 -10.0997 1.8956 40 1 6.2863 -11.5081 1.8650 41 1 4.7458 -12.3272 1.5269 42 1 6.7991 -13.5739 0.7157 43 1 5.6025 -13.2232 -0.5578 44 1 7.9837 -11.4112 0.0494 45 1 8.0192 -12.6894 -1.1922 46 1 6.1945 -11.6614 -2.4030 47 1 7.3964 -10.3946 -2.0729 48 1 2.5596 -3.8509 0.8809 49 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028969461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:16 Heat of formation + Delta-G solvation = -8.853494 kcal Electronic energy + Delta-G solvation = -27040.414823 eV Core-core repulsion = 23352.603708 eV Total energy + Delta-G solvation = -3687.811115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62769 -39.31080 -37.64125 -36.16002 -34.70436 -32.88271 -32.56450 -30.91706 -29.66582 -29.19804 -28.18951 -25.73261 -24.48859 -23.56737 -23.15309 -22.36781 -21.10791 -20.20013 -19.78329 -19.21164 -17.69667 -16.82647 -16.38120 -16.03313 -15.56167 -15.44362 -14.88591 -14.81660 -14.64118 -14.38246 -14.23566 -13.88528 -13.66651 -13.55848 -13.26473 -12.82895 -12.79249 -12.53264 -12.48807 -11.81887 -11.76892 -11.69592 -11.64883 -11.48674 -11.29955 -10.96136 -10.89787 -10.79606 -10.78082 -10.42297 -10.16305 -10.04146 -9.92974 -9.74960 -9.50680 -9.08968 -8.99506 -8.77307 -8.64876 -6.83703 -5.65485 -3.07223 0.66704 1.10955 2.76940 3.20408 3.40406 3.44477 3.45897 3.67764 4.23634 4.26788 4.48449 4.49308 4.58387 4.70978 4.72456 4.82687 4.93028 5.12031 5.12800 5.14144 5.19001 5.25554 5.39703 5.42064 5.47027 5.50008 5.53048 5.59095 5.64312 5.70467 5.72880 5.81180 5.88632 5.90400 6.05992 6.09840 6.10314 6.18709 6.31570 6.34832 6.43504 6.55180 6.58767 6.66295 6.72722 6.90663 7.50946 7.54656 7.62103 7.85528 8.23281 8.36283 9.21965 9.82905 10.47790 11.38456 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.002121 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.900268 B =13197.024981 C =14021.552661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.555 3.445 17 O -0.543 6.543 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.127 4.127 21 C -0.055 4.055 22 C -0.087 4.087 23 C -0.060 4.060 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.084 4.084 28 C 0.141 3.859 29 H 0.253 0.747 30 H 0.012 0.988 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.024 0.976 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 -25.517 -3.174 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.370 5.370 16 C 0.343 3.657 17 O -0.421 6.421 18 C -0.136 4.136 19 C -0.106 4.106 20 C -0.145 4.145 21 C -0.055 4.055 22 C -0.087 4.087 23 C -0.079 4.079 24 C -0.118 4.118 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.121 4.121 28 C 0.015 3.985 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.042 0.958 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 10.599 -25.464 -2.391 27.685 hybrid contribution 0.590 1.134 -0.597 1.411 sum 11.189 -24.330 -2.988 26.946 Atomic orbital electron populations 1.69788 1.04875 1.24895 1.57566 1.24795 0.95751 0.97739 1.02445 0.86143 0.78394 0.83015 0.77884 1.21236 1.21554 1.21154 1.19028 0.90461 0.82507 1.43160 0.90607 1.44508 1.01990 0.99703 1.86858 1.21945 0.84649 0.92496 0.98200 1.23009 0.95503 0.98583 1.00354 1.22446 0.98363 0.93981 0.98614 0.90597 1.21495 0.90059 0.90980 0.96560 1.46013 1.41645 1.26180 1.23207 1.18263 0.81779 0.80704 0.84999 1.90758 1.59490 1.71254 1.20629 1.19897 0.99656 0.97773 0.96239 1.21256 0.96053 0.99132 0.94165 1.21097 0.97936 0.95101 1.00390 1.19836 0.96635 0.95163 0.93913 1.19579 0.97108 0.97326 0.94671 1.21280 0.94476 0.92573 0.99559 1.20485 1.00550 0.93141 0.97626 1.21551 0.98073 0.97591 0.98538 1.21556 0.97708 0.98231 0.98359 1.20535 0.96054 0.97655 0.97818 1.21331 0.93453 0.85983 0.97708 0.93671 0.96991 0.87516 0.92099 0.91800 0.91068 0.91475 0.76438 0.85425 0.85485 0.84788 0.90434 0.90524 0.91326 0.91549 0.91474 0.91348 0.90330 0.90457 0.95776 0.96454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -15.50 3.40 -170.04 -0.58 -16.08 16 10 C 0.15 3.67 5.89 -2.50 -0.01 3.66 16 11 C -0.14 -2.52 6.53 -24.58 -0.16 -2.68 16 12 C -0.11 -1.92 2.95 -88.79 -0.26 -2.18 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.13 2.01 5.02 -4.04 -0.02 1.99 16 15 N -0.72 -9.78 5.42 -61.24 -0.33 -10.11 16 16 C 0.56 8.22 7.78 -12.33 -0.10 8.12 16 17 O -0.54 -9.82 16.35 5.32 0.09 -9.74 16 18 C -0.13 -1.63 5.87 -105.07 -0.62 -2.25 16 19 C -0.09 -0.89 9.54 -39.29 -0.37 -1.26 16 20 C -0.13 -1.13 9.59 -39.49 -0.38 -1.51 16 21 C -0.06 -0.48 5.75 -104.47 -0.60 -1.08 16 22 C -0.09 -0.82 5.73 -104.63 -0.60 -1.42 16 23 C -0.06 -0.69 9.16 -39.05 -0.36 -1.05 16 24 C -0.08 -0.58 5.66 -28.05 -0.16 -0.74 16 25 C -0.12 -0.68 5.98 -26.71 -0.16 -0.84 16 26 C -0.12 -0.67 5.97 -26.72 -0.16 -0.83 16 27 C -0.08 -0.52 5.67 -28.04 -0.16 -0.68 16 28 C 0.14 2.89 6.76 -3.07 -0.02 2.87 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 31 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.40 4.60 6.52 -40.82 -0.27 4.34 16 37 H 0.13 1.08 6.43 -52.49 -0.34 0.74 16 38 H 0.13 0.85 8.05 -52.49 -0.42 0.43 16 39 H 0.13 1.56 7.63 -52.49 -0.40 1.16 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 44 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.02 0.51 7.70 -51.93 -0.40 0.11 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -32.69 385.79 -11.86 -44.55 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.00 Total: 1.55 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -4.39 Total: -6.72 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.35 Total: -52.59 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.69 -11.86 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028969461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds