Wall clock time and date at job start Tue Mar 31 2020 16:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48497 * 109.47139 * 240.00233 * 3 2 1 5 5 H 1.48502 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46988 * 120.00002 * 3 2 1 7 7 C 1.38806 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62509 * 359.91425 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.14198 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.52999 * 110.71830 * 154.02508 * 12 11 10 15 15 N 1.46505 * 109.47097 * 174.99627 * 14 12 11 16 16 C 1.34776 * 119.99638 * 179.97438 * 15 14 12 17 17 O 1.21551 * 120.00532 * 0.02562 * 16 15 14 18 18 C 1.47848 * 119.99564 * 180.02562 * 16 15 14 19 19 C 1.39607 * 120.27069 * 0.02562 * 18 16 15 20 20 C 1.37627 * 119.62053 * 180.10040 * 19 18 16 21 21 C 1.39085 * 120.75584 * 359.97438 * 20 19 18 22 22 C 1.37833 * 119.89743 * 359.77908 * 21 20 19 23 23 C 1.38655 * 119.82807 * 0.09623 * 22 21 20 24 24 C 1.50664 * 122.54792 * 180.47562 * 22 21 20 25 25 C 1.52718 * 110.59487 * 342.09498 * 24 22 21 26 26 C 1.53321 * 108.37019 * 51.17203 * 25 24 22 27 27 C 1.50682 * 117.60894 * 179.40542 * 21 20 19 28 28 C 1.47017 * 125.65517 * 179.97438 * 9 7 2 29 29 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.34870 * 85.32328 * 10 9 7 31 31 H 1.09001 * 110.40581 * 322.99363 * 10 9 7 32 32 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 33 33 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 34 34 H 1.09006 * 109.47109 * 294.99535 * 14 12 11 35 35 H 1.09000 * 109.47466 * 54.99291 * 14 12 11 36 36 H 0.97001 * 119.99810 * 0.02562 * 15 14 12 37 37 H 1.07996 * 120.19147 * 0.07324 * 19 18 16 38 38 H 1.07996 * 119.62749 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.78044 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.25188 * 102.38163 * 24 22 21 41 41 H 1.09001 * 109.25350 * 221.80602 * 24 22 21 42 42 H 1.09003 * 109.68677 * 170.89442 * 25 24 22 43 43 H 1.09005 * 109.68405 * 291.41539 * 25 24 22 44 44 H 1.09001 * 109.68132 * 49.81813 * 26 25 24 45 45 H 1.09008 * 109.67802 * 170.32165 * 26 25 24 46 46 H 1.08997 * 109.24899 * 282.80335 * 27 21 20 47 47 H 1.09001 * 109.24316 * 42.22101 * 27 21 20 48 48 H 1.08998 * 109.88206 * 59.48273 * 28 9 7 49 49 H 1.09007 * 109.88177 * 298.32145 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1419 -2.5328 0.0018 11 6 -0.4008 -3.9322 0.6134 12 6 0.7787 -4.7524 0.0273 13 1 0.5451 -5.0983 -0.9797 14 6 1.1214 -5.9336 0.9373 15 7 2.1545 -6.7556 0.3022 16 6 2.6164 -7.8577 0.9256 17 8 2.1756 -8.1699 2.0144 18 6 3.6594 -8.6869 0.2849 19 6 4.1701 -8.3333 -0.9654 20 6 5.1393 -9.1159 -1.5504 21 6 5.6161 -10.2549 -0.9101 22 6 5.1195 -10.6064 0.3266 23 6 4.1447 -9.8237 0.9264 24 6 5.6002 -11.8208 1.0778 25 6 6.3193 -12.7848 0.1366 26 6 7.3799 -11.9983 -0.6426 27 6 6.6674 -11.0672 -1.6210 28 6 1.9319 -3.7274 -0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5290 -2.4860 -1.0162 31 1 -0.5991 -1.7588 0.6182 32 1 -1.3585 -4.3328 0.2810 33 1 -0.3505 -3.8984 1.7017 34 1 1.4902 -5.5610 1.8930 35 1 0.2283 -6.5362 1.1025 36 1 2.5066 -6.5062 -0.5666 37 1 3.8065 -7.4508 -1.4708 38 1 5.5348 -8.8422 -2.5174 39 1 3.7564 -10.0997 1.8956 40 1 6.2863 -11.5081 1.8650 41 1 4.7458 -12.3272 1.5269 42 1 6.7991 -13.5739 0.7157 43 1 5.6025 -13.2232 -0.5578 44 1 7.9837 -11.4112 0.0494 45 1 8.0192 -12.6894 -1.1922 46 1 6.1945 -11.6614 -2.4030 47 1 7.3964 -10.3946 -2.0729 48 1 2.5596 -3.8509 0.8809 49 1 2.5271 -3.8643 -0.9045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028969461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:15 Heat of formation + Delta-G solvation = -26.816374 kcal Electronic energy + Delta-G solvation = -27041.193752 eV Core-core repulsion = 23352.603708 eV Total energy + Delta-G solvation = -3688.590044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49782 -40.31353 -39.22828 -36.82662 -36.14007 -34.36108 -33.52407 -32.03491 -31.18383 -29.90437 -29.69594 -27.39114 -25.80149 -24.43873 -24.07369 -23.12917 -22.28192 -21.71081 -21.21578 -20.09208 -18.94329 -18.53529 -17.47977 -16.95063 -16.70973 -16.62587 -16.22078 -16.01311 -15.66975 -15.47879 -15.31662 -14.73628 -14.64873 -14.47284 -14.29598 -14.28265 -13.81947 -13.55462 -13.44410 -13.39423 -13.17475 -13.07311 -12.83930 -12.65819 -12.43689 -12.34126 -12.05954 -11.91505 -11.83845 -11.73400 -11.61208 -11.48713 -11.36519 -11.31327 -10.94770 -10.73609 -10.22185 -9.78430 -9.54996 -8.88626 -7.77787 -5.22055 -0.16933 0.36410 1.45856 1.49110 1.55496 1.78802 2.09737 2.49259 2.81613 3.31357 3.54631 3.64361 3.66851 3.76918 3.84488 3.94411 3.98441 4.05881 4.06447 4.16519 4.22699 4.26750 4.43251 4.52608 4.63373 4.64408 4.66622 4.68022 4.76557 4.88913 4.90378 4.90822 5.00754 5.03115 5.04024 5.10472 5.11649 5.17355 5.27763 5.28885 5.34764 5.40496 5.45456 5.47005 5.48579 5.63764 5.65609 5.82381 5.95487 6.31463 6.46781 7.10743 7.12204 7.78533 8.42065 9.23917 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.002121 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.900268 B =13197.024981 C =14021.552661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.098 0.902 14 C 0.143 3.857 15 N -0.711 5.711 16 C 0.554 3.446 17 O -0.584 6.584 18 C -0.155 4.155 19 C -0.090 4.090 20 C -0.128 4.128 21 C -0.053 4.053 22 C -0.092 4.092 23 C -0.076 4.076 24 C -0.083 4.083 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.084 4.084 28 C 0.137 3.863 29 H 0.247 0.753 30 H -0.008 1.008 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.018 0.982 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.826 -27.261 -4.790 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.020 3.980 15 N -0.362 5.362 16 C 0.343 3.657 17 O -0.466 6.466 18 C -0.158 4.158 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.054 4.054 22 C -0.093 4.093 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.121 4.121 28 C 0.012 3.988 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.250 0.750 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.036 0.964 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.467 -27.232 -4.033 30.221 hybrid contribution 0.076 1.621 -0.112 1.627 sum 12.543 -25.611 -4.145 28.817 Atomic orbital electron populations 1.70048 1.06152 1.25102 1.58511 1.25650 0.96695 1.01021 1.02751 0.85119 0.77120 0.78727 0.78162 1.20276 1.21894 1.20491 1.19407 0.90972 0.83895 1.42679 0.90321 1.44827 1.02843 1.00929 1.86845 1.21746 0.84025 0.94807 0.96718 1.22855 0.97779 0.95531 1.00013 1.22280 0.95809 0.93170 0.99975 0.88363 1.21248 0.90818 0.90593 0.95380 1.45877 1.41155 1.25644 1.23536 1.18676 0.81791 0.80720 0.84475 1.90728 1.61059 1.72343 1.22490 1.19791 1.00194 0.98274 0.97557 1.21449 0.96211 0.99847 0.93303 1.21451 0.97185 0.94670 1.01289 1.20247 0.96518 0.95174 0.93434 1.19837 0.96493 0.97699 0.95227 1.21333 0.95553 0.93149 0.99440 1.20548 1.00803 0.92734 0.97926 1.21558 0.98086 0.97483 0.98376 1.21578 0.97650 0.98337 0.98258 1.20633 0.95623 0.97851 0.97970 1.21502 0.94730 0.84755 0.97778 0.94315 0.98978 0.91091 0.89112 0.91982 0.92859 0.90508 0.75041 0.83904 0.82820 0.86121 0.90230 0.90528 0.90015 0.91522 0.91988 0.89617 0.89070 0.89152 0.96375 0.95224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.63 10.27 84.03 0.86 -12.76 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -32.50 3.40 -691.89 -2.35 -34.85 16 10 C 0.15 7.47 5.89 86.85 0.51 7.98 16 11 C -0.12 -4.45 6.53 31.98 0.21 -4.24 16 12 C -0.09 -2.96 2.95 -9.61 -0.03 -2.99 16 13 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 14 C 0.14 4.18 5.02 86.38 0.43 4.62 16 15 N -0.71 -18.52 5.42 -465.96 -2.53 -21.05 16 16 C 0.55 16.40 7.78 86.79 0.67 17.07 16 17 O -0.58 -21.69 16.35 -3.88 -0.06 -21.75 16 18 C -0.16 -3.78 5.87 -20.16 -0.12 -3.89 16 19 C -0.09 -1.66 9.54 22.46 0.21 -1.45 16 20 C -0.13 -1.94 9.59 22.33 0.21 -1.72 16 21 C -0.05 -0.81 5.75 -19.76 -0.11 -0.93 16 22 C -0.09 -1.67 5.73 -19.87 -0.11 -1.78 16 23 C -0.08 -1.76 9.16 22.62 0.21 -1.55 16 24 C -0.08 -1.11 5.66 29.74 0.17 -0.94 16 25 C -0.12 -1.08 5.98 30.61 0.18 -0.90 16 26 C -0.12 -0.98 5.97 30.60 0.18 -0.80 16 27 C -0.08 -0.77 5.67 29.74 0.17 -0.61 16 28 C 0.14 5.52 6.76 86.73 0.59 6.10 16 29 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 30 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.07 4.01 5.88 -2.39 -0.01 4.00 16 32 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 34 H 0.05 1.77 7.95 -2.38 -0.02 1.75 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.41 8.67 6.52 -92.71 -0.60 8.07 16 37 H 0.14 2.09 6.43 -2.91 -0.02 2.07 16 38 H 0.15 1.47 8.05 -2.91 -0.02 1.45 16 39 H 0.12 3.02 7.63 -2.91 -0.02 2.99 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.62 8.10 -2.38 -0.02 0.60 16 44 H 0.06 0.58 8.10 -2.39 -0.02 0.56 16 45 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 48 H 0.02 0.76 7.70 -2.39 -0.02 0.74 16 49 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -72.82 385.79 2.35 -70.48 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.34 Total: 18.09 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.71 Total: -2.26 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.66 Total: -112.55 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.82 2.35 -70.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028969461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds