Wall clock time and date at job start Tue Mar 31 2020 16:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46707 * 299.99495 * 3 2 1 6 6 H 1.48502 * 109.47138 * 59.99471 * 3 2 1 7 7 C 1.38812 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99719 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49633 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11812 * 155.36318 * 10 9 7 12 12 C 1.53001 * 113.74245 * 137.95513 * 11 10 9 13 13 N 1.46498 * 109.47151 * 176.92432 * 12 11 10 14 14 C 1.34781 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21545 * 119.99707 * 359.97438 * 14 13 12 16 16 C 1.47842 * 119.99524 * 179.97438 * 14 13 12 17 17 C 1.39268 * 119.85839 * 325.92913 * 16 14 13 18 18 C 1.37943 * 119.61072 * 180.18823 * 17 16 14 19 19 C 1.38069 * 119.85759 * 359.44604 * 18 17 16 20 20 C 1.39122 * 120.85926 * 359.90228 * 19 18 17 21 21 C 1.37066 * 119.88182 * 1.14196 * 20 19 18 22 22 C 1.50897 * 123.45905 * 178.28539 * 21 20 19 23 23 C 1.52781 * 111.47573 * 29.78786 * 22 21 20 24 24 C 1.52986 * 108.49393 * 268.53768 * 23 22 21 25 25 C 1.52582 * 109.65361 * 60.84310 * 24 23 22 26 26 C 1.50597 * 117.38623 * 182.59657 * 20 19 18 27 27 C 1.47813 * 134.45324 * 359.86981 * 9 7 2 28 28 H 0.97004 * 119.99877 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.77119 * 41.05792 * 10 9 7 30 30 H 1.09004 * 113.76725 * 269.66509 * 10 9 7 31 31 H 1.09003 * 113.73976 * 269.15522 * 11 10 9 32 32 H 1.08998 * 109.47148 * 56.91883 * 12 11 10 33 33 H 1.09002 * 109.46655 * 296.92526 * 12 11 10 34 34 H 0.97002 * 120.00175 * 359.97438 * 13 12 11 35 35 H 1.08001 * 120.19447 * 0.21259 * 17 16 14 36 36 H 1.08006 * 120.06932 * 179.47279 * 18 17 16 37 37 H 1.07999 * 119.56660 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.08644 * 150.30900 * 22 21 20 39 39 H 1.09003 * 109.07924 * 269.28059 * 22 21 20 40 40 H 1.09005 * 109.63135 * 28.23859 * 23 22 21 41 41 H 1.08994 * 109.63393 * 148.83299 * 23 22 21 42 42 H 1.09009 * 109.44165 * 300.79025 * 24 23 22 43 43 H 1.09007 * 109.44373 * 180.90280 * 24 23 22 44 44 H 1.08995 * 109.78939 * 273.46023 * 25 24 23 45 45 H 1.09003 * 109.78832 * 152.61106 * 25 24 23 46 46 H 1.08996 * 109.18424 * 349.87037 * 26 20 19 47 47 H 1.08993 * 109.18978 * 109.18197 * 26 20 19 48 48 H 1.09004 * 113.76855 * 90.37771 * 27 9 7 49 49 H 1.08995 * 113.83962 * 318.91546 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3469 -4.0829 0.6408 12 6 -0.3637 -5.3136 0.0738 13 7 -1.6203 -5.5278 0.7957 14 6 -2.4196 -6.5615 0.4653 15 8 -2.0979 -7.3157 -0.4320 16 6 -3.6874 -6.7780 1.1943 17 6 -3.7688 -6.4707 2.5502 18 6 -4.9531 -6.6783 3.2263 19 6 -6.0505 -7.1773 2.5531 20 6 -5.9808 -7.4738 1.1956 21 6 -4.8041 -7.2925 0.5166 22 6 -4.6277 -7.6227 -0.9452 23 6 -5.9370 -7.4641 -1.7164 24 6 -6.6647 -8.8098 -1.7192 25 6 -6.9753 -9.2282 -0.2851 26 6 -7.2404 -7.9573 0.5266 27 6 -0.1058 -2.7570 0.0025 28 1 -0.4850 0.8401 -0.0004 29 1 2.5623 -4.0325 0.6557 30 1 1.8318 -4.2351 -0.9970 31 1 0.3592 -4.0639 1.7306 32 1 0.2760 -6.1884 0.1904 33 1 -0.5746 -5.1561 -0.9840 34 1 -1.8772 -4.9257 1.5116 35 1 -2.9097 -6.0719 3.0693 36 1 -5.0219 -6.4506 4.2798 37 1 -6.9753 -7.3384 3.0871 38 1 -3.8790 -6.9562 -1.3734 39 1 -4.2817 -8.6521 -1.0388 40 1 -6.5593 -6.7123 -1.2309 41 1 -5.7239 -7.1608 -2.7414 42 1 -6.0318 -9.5635 -2.1880 43 1 -7.5949 -8.7182 -2.2800 44 1 -6.1244 -9.7640 0.1355 45 1 -7.8586 -9.8667 -0.2701 46 1 -7.9917 -8.1685 1.2876 47 1 -7.6138 -7.1792 -0.1391 48 1 -0.5312 -2.8721 -0.9945 49 1 -0.7189 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031753304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:52 Heat of formation + Delta-G solvation = 31.509772 kcal Electronic energy + Delta-G solvation = -27661.549377 eV Core-core repulsion = 23975.488545 eV Total energy + Delta-G solvation = -3686.060832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80951 -39.10869 -37.91398 -36.86885 -34.44709 -32.96665 -32.19941 -31.41491 -30.14266 -28.61648 -26.02578 -25.73073 -24.81516 -24.66082 -23.52493 -21.85019 -20.80371 -20.23419 -19.86843 -19.00523 -17.31899 -16.69394 -16.48883 -16.01454 -15.83857 -15.50328 -15.11862 -14.80225 -14.57894 -14.24330 -13.95716 -13.83258 -13.45781 -13.39691 -13.24157 -12.88648 -12.62789 -12.54125 -12.33588 -12.19909 -12.05916 -11.43155 -11.34660 -11.28267 -11.00787 -10.96104 -10.83751 -10.78466 -10.72192 -10.58936 -10.48748 -9.97953 -9.74693 -9.62286 -9.41678 -9.01382 -8.81487 -8.78027 -8.67491 -6.88603 -5.77717 -3.09849 0.82450 1.20105 2.84126 3.30504 3.38183 3.43542 3.46040 3.66270 4.41257 4.44496 4.48589 4.63768 4.70665 4.71666 4.83932 4.90239 5.00827 5.07929 5.15873 5.29168 5.29436 5.32264 5.35503 5.45636 5.50371 5.57423 5.61871 5.66654 5.72011 5.80586 5.82956 5.97324 6.00594 6.03560 6.03992 6.10832 6.18643 6.22584 6.25330 6.29850 6.35284 6.50199 6.55763 6.63861 6.74604 6.76597 7.21269 7.34419 7.54430 7.65725 7.97197 8.31899 9.03936 9.70098 10.59101 11.39480 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.002359 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.769922 B =11864.230549 C =12004.975613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.153 4.153 12 C 0.130 3.870 13 N -0.715 5.715 14 C 0.554 3.446 15 O -0.537 6.537 16 C -0.132 4.132 17 C -0.088 4.088 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.086 4.086 21 C -0.018 4.018 22 C -0.083 4.083 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.084 4.084 27 C 0.169 3.831 28 H 0.253 0.747 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.402 0.598 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.027 0.973 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -18.362 4.043 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.173 4.173 12 C 0.006 3.994 13 N -0.365 5.365 14 C 0.341 3.659 15 O -0.416 6.416 16 C -0.135 4.135 17 C -0.107 4.107 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.086 4.086 21 C -0.019 4.019 22 C -0.120 4.120 23 C -0.166 4.166 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.121 4.121 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.237 0.763 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.045 0.955 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.744 -18.520 3.384 24.542 hybrid contribution 0.423 1.326 0.396 1.447 sum -15.320 -17.194 3.781 23.338 Atomic orbital electron populations 1.69824 1.04999 1.25191 1.56853 1.24789 0.95700 0.97538 1.02558 0.86048 0.78750 0.83722 0.77261 1.20462 1.21746 1.21710 1.19078 0.90315 0.81996 1.43551 0.90204 1.45997 1.02472 0.99312 1.86157 1.22484 0.93966 0.86461 0.96883 1.23811 0.98237 0.94757 1.00532 1.21478 0.83462 0.98046 0.96397 1.46028 1.22382 1.29602 1.38535 1.18287 0.83471 0.81097 0.83090 1.90752 1.74035 1.45925 1.30858 1.20087 0.94363 1.04420 0.94615 1.21254 0.98345 0.97836 0.93273 1.20997 0.92952 1.00692 1.00158 1.21416 0.98606 0.97885 0.93832 1.19494 0.94753 1.00681 0.93708 1.19699 0.91353 0.94819 0.96053 1.20751 0.97857 1.03528 0.89880 1.21813 0.96679 0.97632 1.00449 1.21649 1.00284 0.97452 0.96578 1.21560 1.01676 0.96775 0.95453 1.20734 0.94036 0.98104 0.99180 1.22353 0.88082 0.88441 0.96767 0.93725 0.93657 0.94632 0.89237 0.91836 0.91292 0.76310 0.85379 0.85498 0.85922 0.89471 0.89932 0.90936 0.91512 0.91856 0.92160 0.91545 0.91617 0.91373 0.89825 0.95494 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 11.39 55.49 0.63 -26.64 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 9 N -0.61 -15.71 3.70 -177.67 -0.66 -16.37 16 10 C 0.13 2.59 8.51 -2.97 -0.03 2.56 16 11 C -0.15 -2.73 3.93 -89.68 -0.35 -3.08 16 12 C 0.13 2.02 5.51 -4.04 -0.02 2.00 16 13 N -0.72 -10.06 5.46 -61.25 -0.33 -10.40 16 14 C 0.55 8.24 6.86 -12.33 -0.08 8.15 16 15 O -0.54 -9.41 14.26 5.33 0.08 -9.34 16 16 C -0.13 -1.69 5.82 -104.77 -0.61 -2.30 16 17 C -0.09 -0.94 9.31 -39.31 -0.37 -1.31 16 18 C -0.13 -1.20 10.04 -39.75 -0.40 -1.60 16 19 C -0.10 -0.89 9.56 -39.32 -0.38 -1.27 16 20 C -0.09 -0.86 5.13 -104.77 -0.54 -1.40 16 21 C -0.02 -0.22 5.54 -104.14 -0.58 -0.80 16 22 C -0.08 -1.00 4.02 -27.90 -0.11 -1.11 16 23 C -0.13 -1.22 5.62 -26.85 -0.15 -1.37 16 24 C -0.12 -0.96 5.64 -26.95 -0.15 -1.11 16 25 C -0.12 -0.88 5.75 -26.88 -0.15 -1.04 16 26 C -0.08 -0.65 5.18 -27.87 -0.14 -0.79 16 27 C 0.17 3.88 7.08 -2.83 -0.02 3.86 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.17 7.88 -51.93 -0.41 0.76 16 34 H 0.40 5.00 7.55 -40.82 -0.31 4.69 16 35 H 0.13 1.16 7.51 -52.49 -0.39 0.77 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.81 7.80 -52.49 -0.41 0.40 16 38 H 0.09 1.25 5.86 -51.93 -0.30 0.95 16 39 H 0.08 1.03 7.70 -51.93 -0.40 0.63 16 40 H 0.07 0.68 5.38 -51.93 -0.28 0.40 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.50 8.05 -51.92 -0.42 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.58 7.80 -51.93 -0.40 0.17 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 47 H 0.08 0.64 5.77 -51.93 -0.30 0.34 16 48 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 49 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -32.61 380.59 -11.65 -44.25 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.74 Total: 2.97 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -4.34 Total: -7.38 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.36 Total: -53.40 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.61 -11.65 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031753304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.764 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds