Wall clock time and date at job start Tue Mar 31 2020 16:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00443 * 2 1 4 4 H 1.48490 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47140 * 300.00496 * 3 2 1 6 6 H 1.48505 * 109.46845 * 59.99944 * 3 2 1 7 7 C 1.38814 * 119.99432 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99616 * 195.68275 * 7 2 1 9 9 N 1.36932 * 120.00215 * 15.67803 * 7 2 1 10 10 C 1.44576 * 118.64421 * 206.51876 * 9 7 2 11 11 C 1.54869 * 109.60612 * 270.70462 * 10 9 7 12 12 C 1.47095 * 110.31995 * 288.73545 * 11 10 9 13 13 C 1.52725 * 114.22833 * 62.82901 * 12 11 10 14 14 C 1.50883 * 109.27566 * 274.83043 * 13 12 11 15 15 H 1.08999 * 109.36690 * 331.92474 * 14 13 12 16 16 N 1.46491 * 109.36796 * 212.17934 * 14 13 12 17 17 C 1.34784 * 120.00134 * 154.74216 * 16 14 13 18 18 O 1.21552 * 119.99303 * 0.02562 * 17 16 14 19 19 C 1.47841 * 120.00143 * 179.97438 * 17 16 14 20 20 C 1.39591 * 120.18889 * 0.02562 * 19 17 16 21 21 C 1.37804 * 119.78957 * 180.02562 * 20 19 17 22 22 C 1.38668 * 120.40649 * 0.02562 * 21 20 19 23 23 C 1.38367 * 120.08287 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99543 * 0.02562 * 23 22 21 25 25 C 1.51392 * 109.74539 * 179.97438 * 23 22 21 26 26 C 1.54338 * 105.17549 * 17.21346 * 25 23 22 27 27 C 1.51432 * 130.21447 * 179.97438 * 22 21 20 28 28 C 1.47599 * 118.64461 * 26.49765 * 9 7 2 29 29 H 0.97001 * 119.99357 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.45401 * 30.74373 * 10 9 7 31 31 H 1.08998 * 109.45495 * 150.66493 * 10 9 7 32 32 H 1.09004 * 109.32373 * 48.99160 * 11 10 9 33 33 H 1.08994 * 109.32996 * 168.64399 * 11 10 9 34 34 H 1.08997 * 108.51029 * 184.05198 * 12 11 10 35 35 H 1.08997 * 108.51072 * 301.69846 * 12 11 10 36 36 H 1.09002 * 109.45049 * 154.94231 * 13 12 11 37 37 H 1.08999 * 109.61407 * 34.81679 * 13 12 11 38 38 H 0.96999 * 120.00371 * 334.74370 * 16 14 13 39 39 H 1.08004 * 120.10387 * 0.04497 * 20 19 17 40 40 H 1.07994 * 119.79394 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.94942 * 180.02562 * 24 23 22 42 42 H 1.09006 * 110.30493 * 258.29334 * 25 23 22 43 43 H 1.09003 * 110.30662 * 136.13956 * 25 23 22 44 44 H 1.08996 * 110.81999 * 215.36336 * 26 25 23 45 45 H 1.08995 * 110.81470 * 91.82245 * 26 25 23 46 46 H 1.08995 * 110.29618 * 43.86857 * 27 22 21 47 47 H 1.08997 * 110.38050 * 281.77093 * 27 22 21 48 48 H 1.09000 * 108.95124 * 17.20469 * 28 9 7 49 49 H 1.09006 * 108.95189 * 258.57372 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0599 -1.2198 0.2523 9 7 1.3636 -2.3659 -0.3215 10 6 1.8687 -3.6099 0.2146 11 6 2.9224 -4.2031 -0.7531 12 6 2.2705 -4.7070 -1.9716 13 6 1.5633 -3.6321 -2.7943 14 6 0.1713 -3.4239 -2.2504 15 1 -0.1779 -4.3471 -1.7881 16 7 -0.7290 -3.0588 -3.3468 17 6 -2.0494 -3.3103 -3.2467 18 8 -2.4930 -3.8397 -2.2465 19 6 -2.9582 -2.9413 -4.3529 20 6 -2.4530 -2.3327 -5.5031 21 6 -3.3076 -1.9918 -6.5289 22 6 -4.6662 -2.2491 -6.4254 23 6 -5.1732 -2.8521 -5.2879 24 6 -4.3250 -3.1983 -4.2527 25 6 -6.6717 -3.0202 -5.4228 26 6 -6.9623 -2.8594 -6.9301 27 6 -5.7908 -1.9724 -7.4010 28 6 0.1796 -2.2983 -1.2001 29 1 -0.4849 0.8401 0.0004 30 1 2.3299 -3.4264 1.1850 31 1 1.0461 -4.3153 0.3319 32 1 3.6411 -3.4290 -1.0222 33 1 3.4436 -5.0236 -0.2601 34 1 3.0263 -5.1813 -2.5976 35 1 1.5372 -5.4608 -1.6852 36 1 1.5031 -3.9521 -3.8346 37 1 2.1213 -2.6978 -2.7326 38 1 -0.3751 -2.6360 -4.1448 39 1 -1.3956 -2.1300 -5.5888 40 1 -2.9168 -1.5205 -7.4186 41 1 -4.7215 -3.6694 -3.3654 42 1 -7.1916 -2.2499 -4.8532 43 1 -6.9733 -4.0111 -5.0832 44 1 -7.9168 -2.3578 -7.0892 45 1 -6.9425 -3.8258 -7.4336 46 1 -5.4905 -2.2474 -8.4120 47 1 -6.0749 -0.9207 -7.3645 48 1 0.1734 -1.3362 -1.7124 49 1 -0.7196 -2.3778 -0.5892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034520040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:52 Heat of formation + Delta-G solvation = 1.976048 kcal Electronic energy + Delta-G solvation = -28215.934197 eV Core-core repulsion = 24528.592687 eV Total energy + Delta-G solvation = -3687.341511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.45124 -39.21527 -37.60857 -35.56274 -34.39002 -33.51169 -31.54560 -30.80515 -30.43300 -28.79690 -27.55315 -26.01492 -24.31710 -23.71456 -22.50527 -22.02184 -21.01128 -20.16552 -19.62444 -19.14687 -17.34206 -16.62445 -16.10153 -15.80622 -15.48397 -15.26903 -14.97522 -14.63242 -14.36385 -13.93790 -13.75586 -13.53849 -13.30254 -13.12467 -13.06803 -12.85600 -12.56444 -12.39956 -12.05466 -12.00272 -11.73543 -11.43926 -11.29310 -11.11902 -11.09077 -10.97621 -10.89338 -10.68584 -10.40771 -10.21511 -10.13023 -9.93594 -9.76902 -9.55667 -9.43262 -8.90949 -8.68368 -8.46671 -8.33579 -6.61662 -5.73287 -3.18379 0.87538 1.30026 3.05606 3.37042 3.45346 3.47468 3.51427 3.94783 4.18793 4.32627 4.52435 4.72893 4.79704 4.86801 5.01556 5.08138 5.21843 5.29322 5.36235 5.42028 5.45213 5.48951 5.54119 5.55515 5.65741 5.67266 5.73871 5.84678 5.88813 5.94927 6.01622 6.05342 6.21517 6.26706 6.34568 6.35766 6.47421 6.50886 6.64551 6.67885 6.69483 6.79873 6.83965 6.94280 7.00305 7.13381 7.42697 7.79303 7.86952 7.95971 8.50127 8.63111 9.27128 9.94418 10.39869 11.32796 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003112 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.194119 B = 8996.331617 C =10013.944257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.116 4.116 14 C 0.119 3.881 15 H 0.074 0.926 16 N -0.712 5.712 17 C 0.555 3.445 18 O -0.536 6.536 19 C -0.123 4.123 20 C -0.086 4.086 21 C -0.115 4.115 22 C -0.081 4.081 23 C -0.108 4.108 24 C -0.049 4.049 25 C -0.082 4.082 26 C -0.120 4.120 27 C -0.084 4.084 28 C 0.175 3.825 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.393 0.607 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -6.620 -16.463 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.154 4.154 14 C 0.014 3.986 15 H 0.092 0.908 16 N -0.362 5.362 17 C 0.342 3.658 18 O -0.413 6.413 19 C -0.126 4.126 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.081 4.081 23 C -0.108 4.108 24 C -0.068 4.068 25 C -0.119 4.119 26 C -0.158 4.158 27 C -0.121 4.121 28 C 0.049 3.951 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.228 0.772 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.985 -6.878 -15.703 19.355 hybrid contribution 0.731 1.256 -0.391 1.505 sum -8.254 -5.622 -16.094 18.940 Atomic orbital electron populations 1.70110 1.05135 1.25209 1.53834 1.25070 0.95238 0.98349 1.00865 0.86284 0.79362 0.84261 0.77238 1.20287 1.21699 1.21762 1.19230 0.92414 0.84902 1.42227 0.91575 1.43545 1.32470 1.02061 1.52791 1.20739 0.94103 0.88267 0.94293 1.21504 1.00190 0.99685 0.97388 1.20251 0.98951 0.97423 0.97009 1.21316 0.95716 1.00878 0.97457 1.21799 0.87885 1.00811 0.88071 0.90771 1.46062 1.07033 1.62211 1.20905 1.18155 0.82357 0.78894 0.86407 1.90765 1.76075 1.43252 1.31257 1.19943 0.94287 1.03081 0.95305 1.21212 0.99803 0.96877 0.92589 1.20515 0.92023 1.01549 0.99259 1.20791 0.93973 0.97296 0.96072 1.20522 0.95901 0.99986 0.94437 1.20714 0.91412 0.96668 0.97959 1.21054 0.91252 1.02692 0.96885 1.22290 0.98096 1.00134 0.95252 1.21090 0.92576 1.00596 0.97826 1.21309 0.89115 0.95104 0.89606 0.93771 0.93574 0.94929 0.92069 0.93457 0.93704 0.93210 0.93152 0.90029 0.77193 0.85368 0.85767 0.84837 0.90034 0.90526 0.90486 0.90921 0.90610 0.89994 0.90476 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 11.01 55.49 0.61 -25.87 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.01 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.26 -6.99 9.44 -15.06 -0.14 -7.13 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.61 2.27 -172.09 -0.39 -15.00 16 10 C 0.15 3.28 5.65 -4.08 -0.02 3.25 16 11 C -0.15 -2.60 5.74 -28.58 -0.16 -2.76 16 12 C -0.10 -1.59 5.17 -29.71 -0.15 -1.75 16 13 C -0.12 -1.97 5.07 -27.94 -0.14 -2.11 16 14 C 0.12 2.33 2.27 -68.50 -0.16 2.18 16 15 H 0.07 1.56 6.73 -51.93 -0.35 1.21 16 16 N -0.71 -12.23 4.92 -55.31 -0.27 -12.50 16 17 C 0.56 10.27 7.74 -12.33 -0.10 10.18 16 18 O -0.54 -11.94 16.00 5.32 0.09 -11.86 16 19 C -0.12 -1.88 5.87 -105.02 -0.62 -2.49 16 20 C -0.09 -1.07 9.54 -39.24 -0.37 -1.44 16 21 C -0.12 -1.25 10.02 -39.58 -0.40 -1.65 16 22 C -0.08 -0.88 6.14 -104.06 -0.64 -1.52 16 23 C -0.11 -1.29 6.12 -104.23 -0.64 -1.93 16 24 C -0.05 -0.70 9.59 -39.14 -0.38 -1.08 16 25 C -0.08 -0.73 6.77 -26.84 -0.18 -0.91 16 26 C -0.12 -0.84 7.08 -25.35 -0.18 -1.01 16 27 C -0.08 -0.65 6.77 -26.84 -0.18 -0.83 16 28 C 0.17 4.29 4.25 -2.94 -0.01 4.27 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 31 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 36 H 0.05 0.73 7.94 -51.93 -0.41 0.31 16 37 H 0.08 1.56 7.48 -51.93 -0.39 1.18 16 38 H 0.39 5.54 6.59 -40.82 -0.27 5.27 16 39 H 0.13 1.33 6.41 -52.48 -0.34 0.99 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.98 7.64 -52.48 -0.40 1.58 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 2.08 6.31 -51.93 -0.33 1.75 16 49 H 0.03 0.90 8.03 -51.93 -0.42 0.49 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -32.45 381.27 -11.70 -44.15 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.89 Total: 5.39 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -4.56 Total: -6.72 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.05 Total: -53.37 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.45 -11.70 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034520040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.123 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds