Wall clock time and date at job start Tue Mar 31 2020 16:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21556 * 120.00245 * 0.02562 * 17 16 14 19 19 C 1.47852 * 120.00155 * 179.97438 * 17 16 14 20 20 C 1.39594 * 120.18175 * 0.02562 * 19 17 16 21 21 C 1.37812 * 119.78059 * 179.97438 * 20 19 17 22 22 C 1.38667 * 120.41354 * 359.97438 * 21 20 19 23 23 C 1.38376 * 120.07517 * 0.02637 * 22 21 20 24 24 C 1.38240 * 120.00065 * 359.73730 * 23 22 21 25 25 C 1.51391 * 109.74325 * 179.97438 * 23 22 21 26 26 C 1.54334 * 105.17348 * 17.22265 * 25 23 22 27 27 C 1.51414 * 130.21752 * 179.97438 * 22 21 20 28 28 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 29 29 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 30 30 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 31 31 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 32 32 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 33 33 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 34 34 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 35 35 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 36 36 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 37 37 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 38 38 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 39 39 H 1.07993 * 120.11265 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.78614 * 180.02562 * 21 20 19 41 41 H 1.07994 * 119.94878 * 180.26136 * 24 23 22 42 42 H 1.08995 * 110.30811 * 136.14479 * 25 23 22 43 43 H 1.09000 * 110.30479 * 258.30004 * 25 23 22 44 44 H 1.08994 * 110.82073 * 91.81634 * 26 25 23 45 45 H 1.09004 * 110.82054 * 215.16205 * 26 25 23 46 46 H 1.09001 * 110.30274 * 281.72113 * 27 22 21 47 47 H 1.09000 * 110.30285 * 43.87743 * 27 22 21 48 48 H 1.09007 * 108.15424 * 33.30548 * 28 9 7 49 49 H 1.08997 * 108.16212 * 149.87211 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9482 -5.3016 -1.4249 19 6 3.7973 -4.1951 -3.4776 20 6 3.0436 -3.3602 -4.3043 21 6 3.5254 -3.0119 -5.5476 22 6 4.7542 -3.4852 -5.9821 23 6 5.5060 -4.3132 -5.1672 24 6 5.0347 -4.6650 -3.9162 25 6 6.7944 -4.6880 -5.8682 26 6 6.9497 -3.6572 -7.0063 27 6 5.4876 -3.2488 -7.2855 28 6 2.1839 -3.5380 0.6659 29 1 -0.4850 -0.8349 -0.0928 30 1 0.7234 -2.4530 2.7206 31 1 0.2089 -0.9925 1.8346 32 1 -1.5417 -2.6551 1.9211 33 1 -0.9968 -2.3364 0.2689 34 1 0.2634 -4.6389 1.7241 35 1 -1.4100 -4.8200 1.1209 36 1 -0.3695 -5.2943 -0.8472 37 1 -0.2633 -3.5249 -0.9671 38 1 1.5691 -3.5331 -2.2918 39 1 2.0861 -2.9884 -3.9707 40 1 2.9425 -2.3656 -6.1871 41 1 5.6240 -5.3079 -3.2792 42 1 7.6348 -4.6183 -5.1777 43 1 6.7229 -5.6956 -6.2778 44 1 7.5352 -2.7996 -6.6751 45 1 7.4014 -4.1162 -7.8858 46 1 5.0656 -3.8705 -8.0751 47 1 5.4355 -2.1961 -7.5633 48 1 3.2404 -3.3972 0.4372 49 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034520041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:55 Heat of formation + Delta-G solvation = 12.404799 kcal Electronic energy + Delta-G solvation = -28730.989315 eV Core-core repulsion = 25044.100029 eV Total energy + Delta-G solvation = -3686.889286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.38882 -39.23883 -37.89706 -35.50625 -34.47553 -33.29475 -31.47774 -31.21675 -30.30528 -28.88319 -27.49875 -26.04880 -24.40875 -23.31450 -22.46070 -21.98247 -20.95292 -20.45379 -19.48074 -19.28252 -17.30933 -17.09450 -16.07710 -15.79796 -15.44359 -15.20259 -14.90188 -14.70312 -14.39688 -14.09884 -13.63536 -13.53462 -13.46728 -13.11252 -13.06210 -12.72237 -12.52951 -12.42645 -12.14548 -11.96243 -11.80982 -11.62893 -11.38393 -11.08179 -11.01300 -10.85280 -10.82243 -10.57904 -10.39113 -10.16537 -10.02476 -9.81656 -9.74874 -9.51182 -9.42904 -8.84543 -8.72797 -8.51077 -8.13159 -6.95533 -6.16975 -3.01494 0.94473 1.38268 3.09947 3.51283 3.58720 3.59676 3.74516 4.00204 4.26415 4.38353 4.61448 4.78243 4.87687 4.96568 5.09112 5.14754 5.15072 5.19584 5.31328 5.35957 5.41147 5.46516 5.50571 5.60314 5.60584 5.69456 5.75488 5.91113 5.94298 5.94692 5.99267 6.02866 6.08393 6.24883 6.33363 6.35022 6.38779 6.43464 6.54151 6.59663 6.68942 6.69270 6.86101 6.89607 6.91950 7.10667 7.23509 7.25210 7.96845 8.04558 8.53570 8.65514 9.08221 9.86164 10.30760 11.13445 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.003771 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.578516 B = 7422.849737 C = 8778.681694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.015 4.015 3 Si 1.033 2.967 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.351 4.351 8 H 0.063 0.937 9 N -0.587 5.587 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.114 3.886 15 H 0.076 0.924 16 N -0.697 5.697 17 C 0.556 3.444 18 O -0.553 6.553 19 C -0.125 4.125 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.080 4.080 23 C -0.111 4.111 24 C -0.050 4.050 25 C -0.080 4.080 26 C -0.121 4.121 27 C -0.084 4.084 28 C 0.154 3.846 29 H 0.273 0.727 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 -8.890 -11.641 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.217 4.217 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.479 4.479 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.007 3.993 15 H 0.094 0.906 16 N -0.346 5.346 17 C 0.343 3.657 18 O -0.433 6.433 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.132 4.132 22 C -0.081 4.081 23 C -0.111 4.111 24 C -0.069 4.069 25 C -0.117 4.117 26 C -0.158 4.158 27 C -0.121 4.121 28 C 0.023 3.977 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.885 -7.703 -11.025 14.680 hybrid contribution -0.186 -1.294 -0.463 1.387 sum 5.699 -8.997 -11.487 15.665 Atomic orbital electron populations 1.70873 1.07169 1.30550 1.45833 1.25360 0.95766 1.00507 1.00068 0.83983 0.75724 0.77574 0.76358 1.21368 1.22253 1.22331 1.19895 1.09226 0.92424 1.26325 0.91871 1.44373 1.38935 1.05033 1.42459 1.20598 0.86870 1.01567 0.90457 1.21092 0.99421 0.94537 1.02369 1.20941 0.99834 0.97469 0.96575 1.21669 0.94221 1.01131 0.97963 1.22799 0.93544 0.99395 0.83593 0.90639 1.45919 1.19786 1.50040 1.18845 1.18131 0.81488 0.80291 0.85839 1.90713 1.57380 1.38222 1.56959 1.19915 0.96349 1.01356 0.95172 1.21272 0.99487 0.95690 0.93475 1.20545 0.95436 1.00967 0.96282 1.20783 0.94392 0.96664 0.96214 1.20501 0.97368 0.99023 0.94255 1.20659 0.94234 0.97701 0.94317 1.21031 0.94579 0.99442 0.96674 1.22299 0.96169 0.99031 0.98316 1.21090 0.94375 1.02142 0.94450 1.20615 0.96275 0.86213 0.94605 0.91421 0.95821 0.88735 0.94191 0.91059 0.91725 0.92614 0.93632 0.91036 0.76611 0.85204 0.85700 0.85051 0.90580 0.90249 0.90851 0.90548 0.90096 0.90500 0.94045 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.99 55.49 0.67 -24.36 16 2 C -0.01 -0.40 4.53 -17.43 -0.08 -0.48 16 3 Si 1.03 24.71 30.06 -169.99 -5.11 19.60 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.35 -9.29 9.46 -15.06 -0.14 -9.43 16 8 H 0.06 1.76 8.05 -52.48 -0.42 1.34 16 9 N -0.59 -13.88 2.62 -175.40 -0.46 -14.34 16 10 C 0.13 2.87 5.22 -5.20 -0.03 2.84 16 11 C -0.13 -2.60 4.96 -30.18 -0.15 -2.75 16 12 C -0.11 -1.82 5.76 -28.40 -0.16 -1.99 16 13 C -0.11 -1.89 5.23 -27.19 -0.14 -2.04 16 14 C 0.11 2.12 2.91 -66.23 -0.19 1.93 16 15 H 0.08 1.41 7.57 -51.93 -0.39 1.01 16 16 N -0.70 -12.66 5.03 -53.09 -0.27 -12.92 16 17 C 0.56 10.46 7.59 -12.33 -0.09 10.37 16 18 O -0.55 -11.86 16.01 5.32 0.09 -11.77 16 19 C -0.12 -2.04 5.87 -105.01 -0.62 -2.66 16 20 C -0.08 -1.17 9.54 -39.23 -0.37 -1.54 16 21 C -0.11 -1.45 10.02 -39.58 -0.40 -1.85 16 22 C -0.08 -0.97 6.14 -104.06 -0.64 -1.60 16 23 C -0.11 -1.42 6.12 -104.23 -0.64 -2.05 16 24 C -0.05 -0.75 9.59 -39.14 -0.38 -1.13 16 25 C -0.08 -0.76 6.77 -26.84 -0.18 -0.94 16 26 C -0.12 -0.95 7.08 -25.32 -0.18 -1.13 16 27 C -0.08 -0.73 6.77 -26.82 -0.18 -0.92 16 28 C 0.15 3.27 4.75 -4.93 -0.02 3.25 16 29 H 0.27 7.33 4.95 -40.82 -0.20 7.13 16 30 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.09 2.39 5.61 -51.93 -0.29 2.10 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.54 4.65 -51.93 -0.24 1.30 16 34 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 1.35 6.58 -51.93 -0.34 1.01 16 38 H 0.40 6.90 6.48 -40.82 -0.26 6.63 16 39 H 0.13 1.78 6.41 -52.49 -0.34 1.44 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.13 1.98 7.64 -52.49 -0.40 1.57 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.04 0.99 7.81 -51.93 -0.41 0.58 16 49 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -30.31 373.72 -11.48 -41.78 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.43 Total: 8.48 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.60 Total: -12.11 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.06 Total: -51.62 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.11 Total: 19.60 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.31 -11.48 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034520041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.190 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds