Wall clock time and date at job start Tue Mar 31 2020 16:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 300.00555 * 3 2 1 6 6 H 1.48502 * 109.46902 * 60.00353 * 3 2 1 7 7 C 1.38813 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00332 * 195.68110 * 7 2 1 9 9 N 1.36934 * 120.00139 * 15.67594 * 7 2 1 10 10 C 1.47607 * 118.64515 * 26.50857 * 9 7 2 11 11 C 1.53942 * 112.14360 * 137.86269 * 10 9 7 12 12 C 1.50879 * 110.09750 * 319.43911 * 11 10 9 13 13 C 1.52562 * 109.35948 * 91.88765 * 12 11 10 14 14 C 1.47086 * 114.33008 * 274.98562 * 13 12 11 15 15 H 1.09000 * 109.32802 * 302.71233 * 14 13 12 16 16 N 1.46503 * 109.33324 * 183.05742 * 14 13 12 17 17 C 1.34779 * 119.99978 * 154.65206 * 16 14 13 18 18 O 1.21555 * 120.00033 * 359.97438 * 17 16 14 19 19 C 1.47842 * 119.99821 * 180.02562 * 17 16 14 20 20 C 1.39502 * 120.04143 * 359.97438 * 19 17 16 21 21 C 1.37933 * 119.76672 * 179.97438 * 20 19 17 22 22 C 1.38257 * 120.09700 * 359.97438 * 21 20 19 23 23 C 1.38620 * 120.52809 * 0.02562 * 22 21 20 24 24 C 1.37974 * 119.93192 * 0.02562 * 23 22 21 25 25 C 1.51352 * 109.83274 * 180.02562 * 24 23 22 26 26 C 1.54357 * 105.14710 * 17.16262 * 25 24 23 27 27 C 1.51396 * 130.30740 * 179.97438 * 23 22 21 28 28 C 1.44662 * 118.81685 * 206.51219 * 9 7 2 29 29 H 0.97004 * 120.00023 * 359.97438 * 1 2 3 30 30 H 1.08997 * 108.94302 * 17.17742 * 10 9 7 31 31 H 1.09002 * 108.94429 * 258.55541 * 10 9 7 32 32 H 1.08998 * 109.36703 * 199.24101 * 11 10 9 33 33 H 1.09005 * 109.26074 * 79.56397 * 11 10 9 34 34 H 1.08998 * 109.48903 * 331.92544 * 12 11 10 35 35 H 1.08998 * 109.48767 * 211.85750 * 12 11 10 36 36 H 1.08998 * 108.51709 * 153.72594 * 13 12 11 37 37 H 1.09009 * 108.39132 * 36.14926 * 13 12 11 38 38 H 0.96998 * 119.99836 * 334.65459 * 16 14 13 39 39 H 1.07996 * 120.11313 * 359.95620 * 20 19 17 40 40 H 1.07999 * 119.95270 * 179.97438 * 21 20 19 41 41 H 1.07993 * 119.73813 * 180.02562 * 22 21 20 42 42 H 1.09003 * 110.30458 * 258.24950 * 25 24 23 43 43 H 1.08999 * 110.30857 * 136.08612 * 25 24 23 44 44 H 1.08997 * 110.82364 * 91.92116 * 26 25 24 45 45 H 1.09001 * 110.82646 * 215.28185 * 26 25 24 46 46 H 1.09003 * 110.30342 * 43.90580 * 27 23 22 47 47 H 1.08994 * 110.30598 * 281.75343 * 27 23 22 48 48 H 1.09004 * 109.61840 * 150.83610 * 28 9 7 49 49 H 1.09004 * 109.32220 * 30.89176 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0600 -1.2198 0.2522 9 7 1.3637 -2.3659 -0.3215 10 6 0.1797 -2.2984 -1.2003 11 6 0.1719 -3.4236 -2.2509 12 6 1.5632 -3.6343 -2.7951 13 6 2.2712 -4.7062 -1.9721 14 6 2.9229 -4.2026 -0.7535 15 1 3.6393 -3.4263 -1.0219 16 7 3.6264 -5.3030 -0.0896 17 6 4.6792 -5.0440 0.7111 18 8 5.0454 -3.8976 0.8819 19 6 5.3894 -6.1545 1.3806 20 6 4.9702 -7.4705 1.1846 21 6 5.6373 -8.5022 1.8116 22 6 6.7179 -8.2326 2.6309 23 6 7.1413 -6.9280 2.8313 24 6 6.4818 -5.8871 2.2106 25 6 7.1304 -4.5720 2.5854 26 6 8.5167 -4.9518 3.1479 27 6 8.2797 -6.3856 3.6691 28 6 1.8660 -3.6128 0.2128 29 1 -0.4850 0.8401 0.0004 30 1 0.1734 -1.3361 -1.7122 31 1 -0.7195 -2.3782 -0.5894 32 1 -0.4981 -3.1519 -3.0666 33 1 -0.1784 -4.3459 -1.7873 34 1 2.1227 -2.7008 -2.7346 35 1 1.5022 -3.9553 -3.8350 36 1 3.0272 -5.1803 -2.5982 37 1 1.5380 -5.4604 -1.6861 38 1 3.3344 -6.2178 -0.2262 39 1 4.1262 -7.6807 0.5445 40 1 5.3151 -9.5222 1.6624 41 1 7.2362 -9.0449 3.1186 42 1 6.5399 -4.0624 3.3468 43 1 7.2399 -3.9395 1.7044 44 1 9.2699 -4.9444 2.3601 45 1 8.8016 -4.2835 3.9605 46 1 9.1749 -6.9913 3.5283 47 1 7.9981 -6.3646 4.7218 48 1 1.0441 -4.3197 0.3269 49 1 2.3246 -3.4301 1.1846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034549339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:58 Heat of formation + Delta-G solvation = 4.979457 kcal Electronic energy + Delta-G solvation = -28578.170118 eV Core-core repulsion = 24890.958845 eV Total energy + Delta-G solvation = -3687.211273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.59044 -39.11890 -37.47637 -35.82926 -34.48413 -33.18430 -31.83036 -30.82513 -29.90970 -29.12968 -27.36491 -25.94860 -24.48603 -23.70057 -22.79518 -21.45334 -21.04446 -20.11925 -19.80046 -19.11385 -17.23756 -16.54476 -16.26004 -15.83960 -15.59398 -15.22877 -14.96509 -14.65472 -14.36106 -14.17368 -13.57339 -13.49027 -13.23273 -13.09087 -12.88929 -12.63346 -12.57135 -12.44722 -12.07384 -11.91618 -11.51358 -11.40991 -11.35791 -11.20575 -11.01784 -10.97817 -10.86888 -10.72928 -10.50977 -10.09660 -10.07280 -9.69624 -9.60342 -9.53033 -9.42662 -8.98616 -8.72744 -8.64057 -8.27189 -6.58564 -5.70088 -3.13180 0.83451 1.20845 3.03519 3.43267 3.45156 3.51911 3.57530 3.86423 4.24971 4.46567 4.59548 4.73392 4.79469 4.92277 4.97182 5.08114 5.26638 5.31296 5.35069 5.40786 5.48987 5.56381 5.57114 5.65832 5.73278 5.77267 5.79372 5.93207 6.02173 6.07151 6.08301 6.16602 6.18270 6.20645 6.27945 6.34382 6.42179 6.47352 6.62633 6.65933 6.74956 6.77382 6.81613 6.87476 6.96879 7.16029 7.49237 7.76852 7.86848 7.97145 8.55875 8.59892 9.33153 9.98299 10.42447 11.37664 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.003515 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.536471 B = 7963.317849 C = 9535.477674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.112 4.112 14 C 0.115 3.885 15 H 0.089 0.911 16 N -0.719 5.719 17 C 0.549 3.451 18 O -0.521 6.521 19 C -0.117 4.117 20 C -0.089 4.089 21 C -0.130 4.130 22 C -0.088 4.088 23 C -0.111 4.111 24 C -0.032 4.032 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.080 4.080 28 C 0.158 3.842 29 H 0.251 0.749 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.389 0.611 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.031 0.969 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 -18.470 1.928 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.194 4.194 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.305 5.305 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.009 3.991 15 H 0.107 0.893 16 N -0.371 5.371 17 C 0.335 3.665 18 O -0.398 6.398 19 C -0.120 4.120 20 C -0.108 4.108 21 C -0.148 4.148 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.033 4.033 25 C -0.120 4.120 26 C -0.161 4.161 27 C -0.117 4.117 28 C 0.028 3.972 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.223 0.777 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.049 0.951 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.829 -17.462 2.042 21.190 hybrid contribution 0.071 0.201 -0.127 0.248 sum 11.900 -17.261 1.915 21.053 Atomic orbital electron populations 1.70089 1.05184 1.25157 1.54731 1.25005 0.95238 0.98291 1.00891 0.86266 0.79676 0.84083 0.77131 1.20111 1.21677 1.21814 1.19364 0.92726 0.84718 1.41438 0.91216 1.43612 1.32155 1.01531 1.53175 1.21053 0.88462 0.95805 0.89595 1.22079 0.95872 1.00643 0.99634 1.20825 0.97070 0.99435 0.96523 1.20580 0.99184 0.98940 0.96279 1.21259 0.96027 0.88103 0.93757 0.89336 1.46114 1.31816 1.10447 1.48676 1.18241 0.80344 0.88495 0.79419 1.90811 1.65745 1.21596 1.61639 1.19737 0.97857 0.93559 1.00870 1.21220 0.99145 0.91588 0.98857 1.20935 0.96422 0.99104 0.98375 1.20766 0.96548 0.95435 0.97925 1.20639 0.98350 0.93078 0.99019 1.20627 0.92879 0.96557 0.93222 1.21137 0.94286 0.94208 1.02333 1.22371 0.97362 0.95575 1.00793 1.21057 0.95722 0.96189 0.98708 1.20929 0.93317 0.88414 0.94516 0.93884 0.90640 0.95787 0.92924 0.93726 0.90451 0.93424 0.93449 0.92889 0.77653 0.85512 0.85418 0.86050 0.89564 0.89042 0.91038 0.90422 0.90788 0.90154 0.95117 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 11.01 55.49 0.61 -26.04 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 22.56 29.58 -169.99 -5.03 17.53 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.25 -7.14 9.45 -15.06 -0.14 -7.28 16 8 H 0.07 2.05 7.88 -52.49 -0.41 1.63 16 9 N -0.58 -14.69 2.27 -172.02 -0.39 -15.08 16 10 C 0.18 4.19 4.66 -2.95 -0.01 4.17 16 11 C -0.14 -2.64 5.70 -27.30 -0.16 -2.80 16 12 C -0.10 -1.73 5.51 -28.02 -0.15 -1.88 16 13 C -0.11 -1.75 4.55 -29.79 -0.14 -1.89 16 14 C 0.11 2.11 2.34 -69.78 -0.16 1.94 16 15 H 0.09 1.95 7.57 -51.93 -0.39 1.55 16 16 N -0.72 -11.02 5.01 -56.57 -0.28 -11.30 16 17 C 0.55 9.37 7.72 -12.33 -0.10 9.27 16 18 O -0.52 -11.02 14.36 5.32 0.08 -10.94 16 19 C -0.12 -1.65 5.88 -104.92 -0.62 -2.26 16 20 C -0.09 -0.97 9.54 -39.22 -0.37 -1.34 16 21 C -0.13 -1.21 10.03 -39.69 -0.40 -1.61 16 22 C -0.09 -0.84 10.03 -39.43 -0.40 -1.24 16 23 C -0.11 -1.23 6.13 -104.24 -0.64 -1.87 16 24 C -0.03 -0.43 6.03 -103.82 -0.63 -1.06 16 25 C -0.08 -1.10 5.58 -26.85 -0.15 -1.25 16 26 C -0.12 -1.19 7.09 -25.30 -0.18 -1.37 16 27 C -0.08 -0.71 6.77 -26.82 -0.18 -0.89 16 28 C 0.16 3.44 5.24 -4.04 -0.02 3.42 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.08 2.01 6.33 -51.93 -0.33 1.68 16 31 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 34 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.76 7.34 -51.92 -0.38 0.38 16 38 H 0.39 4.59 6.60 -40.82 -0.27 4.32 16 39 H 0.13 1.08 6.40 -52.49 -0.34 0.74 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.38 7.18 -51.93 -0.37 1.01 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 49 H 0.05 1.17 7.97 -51.93 -0.41 0.75 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -32.38 378.39 -11.71 -44.10 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.87 Total: 3.93 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -4.53 Total: -7.91 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.06 Total: -52.41 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.38 -11.71 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034549339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.077 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds