Wall clock time and date at job start Tue Mar 31 2020 16:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21557 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.47840 * 120.00203 * 180.02562 * 17 16 14 20 20 C 1.39496 * 120.04314 * 0.02562 * 19 17 16 21 21 C 1.37933 * 119.76645 * 179.97438 * 20 19 17 22 22 C 1.38256 * 120.09882 * 359.97438 * 21 20 19 23 23 C 1.38620 * 120.52716 * 0.02562 * 22 21 20 24 24 C 1.37981 * 119.92849 * 359.70471 * 23 22 21 25 25 C 1.51355 * 109.82988 * 180.34654 * 24 23 22 26 26 C 1.54348 * 105.14946 * 17.42462 * 25 24 23 27 27 C 1.51391 * 130.30990 * 179.97438 * 23 22 21 28 28 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 29 29 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 31 31 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 32 32 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 33 33 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 34 34 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 35 35 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 36 36 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 37 37 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 38 38 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 39 39 H 1.08002 * 120.11294 * 359.97438 * 20 19 17 40 40 H 1.07997 * 119.94747 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.73553 * 180.02562 * 22 21 20 42 42 H 1.09001 * 110.30554 * 136.34606 * 25 24 23 43 43 H 1.09003 * 110.30002 * 258.51103 * 25 24 23 44 44 H 1.08997 * 110.82696 * 91.91255 * 26 25 24 45 45 H 1.09002 * 110.82810 * 215.27739 * 26 25 24 46 46 H 1.09001 * 110.30592 * 281.74790 * 27 23 22 47 47 H 1.09001 * 110.30865 * 43.90031 * 27 23 22 48 48 H 1.08991 * 108.16323 * 33.30724 * 28 9 7 49 49 H 1.09001 * 108.15805 * 149.87591 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6330 -4.9479 -2.4343 19 6 3.8180 -3.2932 -4.0740 20 6 3.2474 -2.1653 -4.6640 21 6 3.8899 -1.5424 -5.7136 22 6 5.0954 -2.0342 -6.1787 23 6 5.6698 -3.1545 -5.5985 24 6 5.0397 -3.7833 -4.5442 25 6 5.8644 -4.9664 -4.0849 26 6 7.2712 -4.7306 -4.6746 27 6 6.9618 -3.8729 -5.9247 28 6 1.8609 -3.6319 -0.0423 29 1 -0.4850 0.8400 0.0004 30 1 0.3194 -2.9907 2.1359 31 1 0.0606 -1.2837 1.6871 32 1 -1.8584 -2.6529 1.1593 33 1 -1.1129 -1.9535 -0.2841 34 1 -0.2672 -4.7215 0.5101 35 1 -1.8782 -4.4986 -0.2328 36 1 -0.6951 -4.5284 -2.1772 37 1 -0.3869 -2.8286 -1.7622 38 1 1.5622 -2.7047 -2.9018 39 1 2.3059 -1.7811 -4.3001 40 1 3.4506 -0.6692 -6.1728 41 1 5.5936 -1.5417 -7.0006 42 1 5.9105 -4.9956 -2.9963 43 1 5.4428 -5.8942 -4.4717 44 1 7.9013 -4.1891 -3.9691 45 1 7.7349 -5.6748 -4.9602 46 1 6.8330 -4.5017 -6.8057 47 1 7.7643 -3.1533 -6.0867 48 1 2.9443 -3.5745 -0.1465 49 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034549341.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:02 Heat of formation + Delta-G solvation = 9.692639 kcal Electronic energy + Delta-G solvation = -29200.359345 eV Core-core repulsion = 25513.352451 eV Total energy + Delta-G solvation = -3687.006894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.39110 -38.90587 -37.47911 -35.65208 -34.13744 -33.08761 -31.65959 -30.91753 -29.75527 -28.95124 -27.25702 -26.08887 -24.41534 -23.38868 -22.76991 -21.34385 -20.84784 -20.14419 -19.36197 -19.07267 -17.01502 -16.62989 -16.01984 -15.69345 -15.30028 -15.02167 -14.94585 -14.66468 -14.34428 -13.96752 -13.73711 -13.27710 -13.15435 -13.05239 -12.81638 -12.43466 -12.31806 -12.17783 -11.81019 -11.75084 -11.53322 -11.28723 -11.25681 -11.16399 -11.10056 -10.88505 -10.79208 -10.72808 -10.45771 -10.08762 -9.95616 -9.70519 -9.44421 -9.25430 -9.23548 -8.79766 -8.56665 -8.47683 -8.26159 -6.69127 -5.80727 -3.18885 1.03893 1.41441 3.21535 3.35883 3.43967 3.46190 3.75000 4.06326 4.39987 4.49344 4.58626 4.97268 4.99898 5.05244 5.10945 5.24605 5.31765 5.39158 5.48584 5.53329 5.54330 5.65992 5.68762 5.74660 5.83426 5.93712 5.96704 6.08404 6.14870 6.19197 6.24137 6.25006 6.28592 6.41761 6.46233 6.48520 6.54699 6.61840 6.65749 6.87651 6.93588 6.96382 6.99114 7.05043 7.26781 7.27512 7.61537 7.74884 7.98901 8.13858 8.42045 8.77697 9.18824 9.86089 10.39465 11.25802 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.004265 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.147874 B = 6562.959954 C = 7748.751450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.894 3.106 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.164 3.836 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.118 3.882 15 H 0.072 0.928 16 N -0.696 5.696 17 C 0.552 3.448 18 O -0.551 6.551 19 C -0.116 4.116 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.116 4.116 24 C -0.036 4.036 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.078 4.078 28 C 0.151 3.849 29 H 0.251 0.749 30 H 0.005 0.995 31 H 0.089 0.911 32 H 0.024 0.976 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.399 0.601 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 -6.666 -10.874 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.725 3.275 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.082 0.918 9 N -0.303 5.303 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.148 4.148 14 C 0.011 3.989 15 H 0.090 0.910 16 N -0.345 5.345 17 C 0.339 3.661 18 O -0.431 6.431 19 C -0.119 4.119 20 C -0.101 4.101 21 C -0.147 4.147 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.037 4.037 25 C -0.116 4.116 26 C -0.161 4.161 27 C -0.115 4.115 28 C 0.021 3.979 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.055 0.945 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.256 -7.201 -10.455 14.153 hybrid contribution 0.009 1.538 -0.340 1.575 sum 6.265 -5.663 -10.795 13.706 Atomic orbital electron populations 1.69970 1.04935 1.25065 1.54589 1.24840 0.95172 0.97925 1.01581 0.86395 0.79303 0.84231 0.77618 1.21678 1.21980 1.20622 1.19173 0.93466 0.85252 1.38859 0.91832 1.44254 1.33760 1.00799 1.51523 1.20171 0.85399 1.00399 0.89929 1.21008 0.98061 0.95549 1.02265 1.20970 0.98581 0.98897 0.96550 1.21672 0.93482 1.02281 0.97384 1.22718 0.91873 0.95805 0.88552 0.90998 1.45955 1.21770 1.31780 1.34978 1.18180 0.81218 0.83884 0.82781 1.90688 1.65308 1.27004 1.60088 1.19703 0.95982 0.97763 0.98410 1.21332 0.99722 0.93898 0.95115 1.20964 0.95601 1.00503 0.97644 1.20745 0.95372 0.95183 0.99393 1.20581 0.97622 0.96317 0.97047 1.20560 0.92770 0.95963 0.94368 1.21077 0.92478 0.95438 1.02559 1.22430 0.97134 0.99900 0.96664 1.21087 0.93874 0.97949 0.98610 1.20696 0.96995 0.88436 0.91815 0.93845 0.97701 0.89321 0.95694 0.88134 0.92438 0.93271 0.94299 0.90230 0.76540 0.85104 0.85389 0.86180 0.89184 0.90070 0.90935 0.90687 0.90302 0.90942 0.94454 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.58 9.43 55.49 0.52 -23.06 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.89 21.08 29.60 -169.99 -5.03 16.04 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.15 9.62 -15.06 -0.14 -6.29 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.58 -13.75 2.61 -175.41 -0.46 -14.21 16 10 C 0.16 3.72 5.25 -5.20 -0.03 3.70 16 11 C -0.13 -2.67 5.02 -30.18 -0.15 -2.82 16 12 C -0.11 -1.98 5.76 -28.40 -0.16 -2.14 16 13 C -0.11 -1.97 5.23 -27.19 -0.14 -2.12 16 14 C 0.12 2.24 2.91 -66.22 -0.19 2.05 16 15 H 0.07 1.37 7.57 -51.93 -0.39 0.97 16 16 N -0.70 -12.83 5.03 -53.09 -0.27 -13.09 16 17 C 0.55 10.40 7.59 -12.33 -0.09 10.30 16 18 O -0.55 -11.48 14.37 5.32 0.08 -11.40 16 19 C -0.12 -1.92 5.88 -104.93 -0.62 -2.54 16 20 C -0.08 -1.21 9.54 -39.22 -0.37 -1.58 16 21 C -0.13 -1.63 10.03 -39.69 -0.40 -2.03 16 22 C -0.09 -1.06 10.03 -39.43 -0.40 -1.45 16 23 C -0.12 -1.49 6.13 -104.24 -0.64 -2.13 16 24 C -0.04 -0.54 6.03 -103.82 -0.63 -1.17 16 25 C -0.08 -1.08 5.57 -26.86 -0.15 -1.23 16 26 C -0.12 -1.28 7.10 -25.11 -0.18 -1.46 16 27 C -0.08 -0.78 6.79 -26.63 -0.18 -0.96 16 28 C 0.15 3.23 4.75 -4.92 -0.02 3.20 16 29 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16 31 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.10 2.35 5.28 -51.93 -0.27 2.07 16 34 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.62 6.58 -51.93 -0.34 1.27 16 38 H 0.40 7.11 6.47 -40.82 -0.26 6.84 16 39 H 0.13 1.84 6.40 -52.49 -0.34 1.50 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.09 1.41 7.19 -51.93 -0.37 1.04 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.87 7.80 -51.93 -0.41 0.47 16 49 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -28.30 372.59 -11.71 -40.01 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.59 Total: 8.80 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -4.58 Total: -8.70 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.20 Total: -50.36 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.30 -11.71 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034549341.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.699 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds