Wall clock time and date at job start Tue Mar 31 2020 16:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99938 * 2 1 4 4 H 1.48500 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47186 * 300.00229 * 3 2 1 6 6 H 1.48498 * 109.46879 * 60.00044 * 3 2 1 7 7 C 1.38811 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00132 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47114 * 325.00338 * 10 9 7 12 12 C 1.53000 * 109.47214 * 84.99983 * 10 9 7 13 13 C 1.52999 * 109.47279 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47146 * 299.99881 * 13 12 10 15 15 H 1.09003 * 109.47464 * 300.00220 * 14 13 12 16 16 N 1.46496 * 109.47215 * 179.97438 * 14 13 12 17 17 C 1.34775 * 120.00413 * 85.00148 * 16 14 13 18 18 O 1.21291 * 119.99502 * 0.02562 * 17 16 14 19 19 C 1.50694 * 120.00719 * 180.02562 * 17 16 14 20 20 C 1.54346 * 110.99107 * 293.07164 * 19 17 16 21 21 C 1.51371 * 105.11404 * 215.15346 * 20 19 17 22 22 C 1.38490 * 130.39120 * 196.75711 * 21 20 19 23 23 C 1.38103 * 120.21478 * 180.33086 * 22 21 20 24 24 C 1.38253 * 119.93622 * 0.27385 * 23 22 21 25 25 C 1.38106 * 119.93390 * 359.97438 * 24 23 22 26 26 C 1.38227 * 109.75497 * 17.54326 * 21 20 19 27 27 C 1.51373 * 109.75796 * 359.62584 * 26 21 20 28 28 C 1.53009 * 109.47041 * 59.99989 * 14 13 12 29 29 C 1.52999 * 109.47160 * 300.00002 * 28 14 13 30 30 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99750 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47029 * 300.00131 * 12 10 9 33 33 H 1.09003 * 109.46790 * 60.00157 * 12 10 9 34 34 H 1.09004 * 109.46860 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47119 * 60.00312 * 13 12 10 36 36 H 0.97007 * 120.00322 * 265.00322 * 16 14 13 37 37 H 1.09001 * 110.72794 * 56.58870 * 19 17 16 38 38 H 1.09006 * 110.29884 * 334.27365 * 20 19 17 39 39 H 1.09003 * 110.30347 * 96.32643 * 20 19 17 40 40 H 1.08002 * 119.89478 * 0.61285 * 22 21 20 41 41 H 1.07997 * 120.03401 * 180.29281 * 23 22 21 42 42 H 1.08004 * 120.03149 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.89001 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.30165 * 101.97540 * 27 26 21 45 45 H 1.08996 * 110.29873 * 224.12578 * 27 26 21 46 46 H 1.09003 * 109.46803 * 59.99826 * 28 14 13 47 47 H 1.08996 * 109.47206 * 179.97438 * 28 14 13 48 48 H 1.08994 * 109.47027 * 179.97438 * 29 28 14 49 49 H 1.08997 * 109.46953 * 300.00325 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9684 -3.5502 -0.5917 12 6 2.4231 -4.0362 1.4349 13 6 3.1887 -5.3609 1.4337 14 6 2.3115 -6.4563 0.8240 15 1 1.4012 -6.5632 1.4140 16 7 3.0448 -7.7245 0.8223 17 6 3.0376 -8.5087 1.9184 18 8 2.4236 -8.1645 2.9062 19 6 3.7923 -9.8130 1.9169 20 6 3.1573 -10.8180 0.9325 21 6 3.3275 -12.1724 1.5866 22 6 3.2358 -13.4460 1.0503 23 6 3.4265 -14.5535 1.8530 24 6 3.7043 -14.3915 3.1976 25 6 3.7911 -13.1224 3.7353 26 6 3.6002 -12.0105 2.9321 27 6 3.6410 -10.5361 3.2721 28 6 1.9465 -6.0768 -0.6126 29 6 1.1810 -4.7521 -0.6114 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 3.0484 -3.2560 1.8690 33 1 1.5128 -4.1427 2.0249 34 1 3.4483 -5.6314 2.4572 35 1 4.0990 -5.2539 0.8437 36 1 3.5355 -8.0000 0.0322 37 1 4.8436 -9.6501 1.6799 38 1 2.1003 -10.5925 0.7912 39 1 3.6800 -10.7925 -0.0237 40 1 3.0189 -13.5734 0.0000 41 1 3.3589 -15.5452 1.4307 42 1 3.8541 -15.2566 3.8266 43 1 4.0086 -12.9967 4.7857 44 1 2.7140 -10.2347 3.7601 45 1 4.4950 -10.3195 3.9138 46 1 2.8568 -5.9698 -1.2026 47 1 1.3220 -6.8574 -1.0471 48 1 0.9214 -4.4816 -1.6348 49 1 0.2708 -4.8591 -0.0213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034743405.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:20 Heat of formation + Delta-G solvation = -23.478987 kcal Electronic energy + Delta-G solvation = -27063.624896 eV Core-core repulsion = 23375.179573 eV Total energy + Delta-G solvation = -3688.445324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 328.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90567 -39.61754 -38.01128 -35.72217 -34.86959 -33.04304 -31.75782 -30.78884 -30.40633 -29.58409 -27.68273 -27.22520 -24.24168 -23.28370 -22.35773 -21.78095 -21.28228 -20.85189 -20.21324 -19.34657 -17.56225 -16.97846 -16.55419 -16.34048 -16.08384 -15.32772 -15.14077 -14.75986 -14.55014 -14.04156 -13.75035 -13.63265 -13.58440 -13.47041 -13.27685 -13.11384 -12.94078 -12.74036 -12.38835 -12.01981 -11.81276 -11.65020 -11.57627 -11.49198 -11.39000 -11.12883 -11.02903 -10.82632 -10.75912 -10.66226 -10.15144 -10.10317 -9.87810 -9.74907 -9.57083 -9.14592 -8.98856 -8.84844 -8.83085 -6.92877 -5.74698 -3.03063 1.00833 1.05311 2.50882 3.03866 3.41483 3.44122 3.49729 3.51952 3.94041 4.15670 4.54044 4.60406 4.61316 4.66625 4.70049 4.85213 4.87791 5.00516 5.06765 5.16772 5.23141 5.28217 5.36647 5.39255 5.49320 5.52820 5.61089 5.68414 5.70044 5.73684 5.78014 5.84873 5.87684 5.88514 6.03154 6.09820 6.17267 6.24263 6.27478 6.30442 6.30778 6.48705 6.57418 6.65302 6.66522 6.73400 6.99895 7.16153 7.42908 7.72454 8.14035 8.44213 9.55215 10.14039 10.48445 11.48133 Molecular weight = 328.19amu Principal moments of inertia in cm(-1) A = 0.040808 B = 0.001860 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.972411 B =15047.367118 C =15359.558059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.087 0.913 16 N -0.723 5.723 17 C 0.521 3.479 18 O -0.534 6.534 19 C -0.111 4.111 20 C -0.070 4.070 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.108 4.108 26 C -0.090 4.090 27 C -0.069 4.069 28 C -0.118 4.118 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 -30.096 1.434 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.105 0.895 16 N -0.373 5.373 17 C 0.307 3.693 18 O -0.411 6.411 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.126 4.126 26 C -0.091 4.091 27 C -0.106 4.106 28 C -0.157 4.157 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.668 -29.670 2.132 30.984 hybrid contribution 0.446 0.768 -0.311 0.941 sum 9.114 -28.902 1.821 30.360 Atomic orbital electron populations 1.69673 1.05089 1.25461 1.57945 1.24741 0.95507 0.97660 1.03197 0.86142 0.78775 0.84279 0.77158 1.20599 1.21925 1.21923 1.19291 0.91001 0.84160 1.42289 0.91173 1.42436 1.05797 0.99808 1.88547 1.20237 0.94271 0.85976 0.92788 0.93634 1.22224 0.99766 0.94516 1.00815 1.21892 0.98565 0.95390 1.00399 1.21130 0.95470 0.81841 0.97500 0.89467 1.46161 1.53265 1.21849 1.16035 1.20264 0.80934 0.85032 0.83110 1.90723 1.43459 1.73736 1.33154 1.22001 1.00970 0.92669 0.97625 1.20965 1.01932 0.89867 0.97936 1.20496 1.00163 0.94307 0.94886 1.20618 1.00588 0.91158 0.99935 1.21037 1.00643 0.98442 0.94012 1.21057 1.00352 0.96881 0.95450 1.20643 1.00732 0.91514 0.99687 1.20624 0.99027 0.95220 0.94183 1.20955 1.04503 0.89101 0.96087 1.21746 1.00808 0.98259 0.94871 1.21752 0.98950 0.93485 1.01764 0.93613 0.78314 0.91825 0.92504 0.92405 0.92333 0.76849 0.87493 0.89563 0.89833 0.86173 0.85905 0.85896 0.86118 0.88092 0.90165 0.91582 0.91911 0.91371 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.11 5.12 -53.43 -0.27 -18.38 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 14 C 0.14 1.85 2.45 -67.93 -0.17 1.68 16 15 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 16 N -0.72 -7.26 5.08 -53.80 -0.27 -7.53 16 17 C 0.52 5.94 7.02 -10.99 -0.08 5.86 16 18 O -0.53 -8.42 15.17 5.55 0.08 -8.33 16 19 C -0.11 -0.92 3.46 -90.37 -0.31 -1.24 16 20 C -0.07 -0.51 6.32 -26.85 -0.17 -0.68 16 21 C -0.10 -0.84 6.14 -104.20 -0.64 -1.48 16 22 C -0.10 -0.80 10.04 -39.54 -0.40 -1.20 16 23 C -0.12 -0.87 10.05 -39.63 -0.40 -1.27 16 24 C -0.12 -0.86 10.05 -39.62 -0.40 -1.26 16 25 C -0.11 -0.88 10.04 -39.54 -0.40 -1.28 16 26 C -0.09 -0.82 6.14 -104.20 -0.64 -1.46 16 27 C -0.07 -0.64 6.10 -26.85 -0.16 -0.80 16 28 C -0.12 -1.41 5.39 -26.73 -0.14 -1.56 16 29 C -0.12 -1.90 5.39 -26.73 -0.14 -2.05 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 2.79 8.60 -40.82 -0.35 2.43 16 37 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.10 1.13 6.99 -51.93 -0.36 0.76 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -32.97 391.95 -11.77 -44.74 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.14 Total: 8.92 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -4.77 Total: -15.20 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.18 Total: -53.52 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.97 -11.77 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034743405.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.265 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds